Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99761 * 2 1 4 4 C 1.53003 * 109.47185 * 269.99803 * 3 2 1 5 5 C 1.53005 * 109.46804 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46949 * 180.02562 * 5 4 3 7 7 O 1.20821 * 119.99882 * 359.97438 * 6 5 4 8 8 O 1.34228 * 120.00168 * 180.02562 * 6 5 4 9 9 C 1.34774 * 120.00021 * 180.02562 * 2 1 3 10 10 O 1.21585 * 120.00098 * 184.63342 * 9 2 1 11 11 N 1.34771 * 119.99811 * 4.62672 * 9 2 1 12 12 C 1.46507 * 119.99947 * 174.93528 * 11 9 2 13 13 C 1.52999 * 109.47237 * 184.60894 * 12 11 9 14 14 C 1.50699 * 115.54707 * 306.47706 * 13 12 11 15 15 H 1.08000 * 119.99716 * 144.27647 * 14 13 12 16 16 C 1.37878 * 120.00337 * 324.28604 * 14 13 12 17 17 N 1.31519 * 119.99865 * 3.35016 * 16 14 13 18 18 Si 1.86799 * 120.00115 * 183.35127 * 16 14 13 19 19 H 1.48504 * 109.46934 * 59.99592 * 18 16 14 20 20 H 1.48494 * 109.47119 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47171 * 299.99787 * 18 16 14 22 22 C 1.52994 * 117.49872 * 160.81510 * 13 12 11 23 23 C 1.52993 * 117.49986 * 92.15309 * 13 12 11 24 24 H 1.08996 * 109.47393 * 264.30339 * 1 2 3 25 25 H 1.09006 * 109.47134 * 24.30325 * 1 2 3 26 26 H 1.09003 * 109.47043 * 144.30067 * 1 2 3 27 27 H 1.08993 * 109.47480 * 30.00268 * 3 2 1 28 28 H 1.09001 * 109.46966 * 150.00123 * 3 2 1 29 29 H 1.08998 * 109.47126 * 300.00130 * 4 3 2 30 30 H 1.09000 * 109.47000 * 60.00832 * 4 3 2 31 31 H 1.09003 * 109.46937 * 300.00250 * 5 4 3 32 32 H 1.09001 * 109.47370 * 60.00306 * 5 4 3 33 33 H 0.96695 * 116.99914 * 179.97438 * 8 6 5 34 34 H 0.96994 * 120.00574 * 354.65537 * 11 9 2 35 35 H 1.09009 * 109.46892 * 304.60551 * 12 11 9 36 36 H 1.09001 * 109.47245 * 64.60521 * 12 11 9 37 37 H 0.96999 * 119.99427 * 185.00533 * 17 16 14 38 38 H 1.09004 * 117.49952 * 359.97438 * 22 13 12 39 39 H 1.09000 * 117.50189 * 145.01741 * 22 13 12 40 40 H 1.09005 * 117.49514 * 214.97444 * 23 13 12 41 41 H 1.09002 * 117.50236 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2180 3.0352 -1.4424 6 6 3.4687 3.4706 -2.8632 7 8 3.0758 2.7908 -3.7816 8 8 4.1293 4.6130 -3.1085 9 6 2.1389 -1.1672 -0.0005 10 8 3.3517 -1.1690 0.0845 11 7 1.4683 -2.3324 -0.0952 12 6 2.2043 -3.5941 -0.2076 13 6 1.2166 -4.7440 -0.4152 14 6 0.1133 -4.8454 0.6063 15 1 -0.8735 -5.1648 0.3052 16 6 0.3634 -4.5300 1.9250 17 7 1.5463 -4.0779 2.2800 18 14 -0.9778 -4.7450 3.2073 19 1 -1.3962 -6.1692 3.2521 20 1 -0.4593 -4.3398 4.5385 21 1 -2.1439 -3.8975 2.8509 22 6 1.7642 -6.0495 -0.9954 23 6 0.8845 -5.1387 -1.8555 24 1 -0.3634 -0.1020 1.0225 25 1 -0.3634 0.9366 -0.4230 26 1 -0.3633 -0.8346 -0.5997 27 1 1.6085 2.0284 0.5138 28 1 3.1499 1.1384 0.5138 29 1 3.0416 0.9508 -1.9563 30 1 1.5001 1.8409 -1.9563 31 1 2.6292 3.7950 -0.9284 32 1 4.1705 2.9045 -0.9287 33 1 4.2663 4.8505 -4.0358 34 1 0.4984 -2.3361 -0.0848 35 1 2.8858 -3.5428 -1.0569 36 1 2.7742 -3.7650 0.7057 37 1 1.7458 -3.9250 3.2169 38 1 2.8280 -6.0890 -1.2297 39 1 1.3260 -6.9817 -0.6388 40 1 -0.1321 -5.4721 -2.0643 41 1 1.3693 -4.5789 -2.6553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340483059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = -119.118692 kcal Electronic energy + Delta-G solvation = -22822.789332 eV Core-core repulsion = 19316.812175 eV Total energy + Delta-G solvation = -3505.977157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28512 -40.90860 -38.63074 -37.26589 -36.74503 -35.06714 -34.20071 -33.77415 -29.14786 -27.97777 -27.42839 -26.35436 -23.79077 -22.95160 -21.66577 -21.11329 -20.56942 -19.17976 -18.94865 -17.98911 -17.62268 -17.18410 -16.87968 -16.77433 -16.34073 -15.70417 -15.40730 -15.08938 -14.82565 -14.31458 -14.19776 -14.01647 -13.54051 -13.38976 -13.32512 -13.12840 -12.87099 -12.78686 -12.62349 -12.56661 -12.50926 -12.28297 -12.03670 -11.68499 -11.63434 -11.50649 -11.03510 -10.81863 -10.67260 -10.14611 -9.83078 -9.25185 -7.91364 -6.17953 1.24135 1.45642 1.48835 1.55438 1.88180 2.22962 2.42334 2.45905 3.02854 3.39261 3.67888 3.89334 3.98957 4.14891 4.27968 4.34753 4.45686 4.54587 4.59227 4.66554 4.74217 4.77990 4.80518 4.83882 4.93304 4.95747 5.04742 5.14304 5.27928 5.30874 5.53374 5.62521 5.65015 5.77717 5.98978 6.01403 6.16677 6.40173 6.83746 7.01799 7.32575 7.47159 7.86050 8.95016 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.003876 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.882760 B = 7221.817893 C = 7860.979814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.638 5.638 3 C 0.134 3.866 4 C -0.116 4.116 5 C -0.104 4.104 6 C 0.482 3.518 7 O -0.561 6.561 8 O -0.512 6.512 9 C 0.691 3.309 10 O -0.649 6.649 11 N -0.698 5.698 12 C 0.197 3.803 13 C 0.010 3.990 14 C -0.507 4.507 15 H 0.059 0.941 16 C 0.036 3.964 17 N -0.888 5.888 18 Si 0.951 3.049 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.264 1.264 22 C -0.199 4.199 23 C -0.188 4.188 24 H 0.055 0.945 25 H 0.107 0.893 26 H 0.059 0.941 27 H 0.118 0.882 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.121 0.879 33 H 0.426 0.574 34 H 0.400 0.600 35 H 0.007 0.993 36 H 0.073 0.927 37 H 0.256 0.744 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.748 16.745 -5.068 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.375 5.375 3 C 0.012 3.988 4 C -0.156 4.156 5 C -0.142 4.142 6 C 0.327 3.673 7 O -0.452 6.452 8 O -0.326 6.326 9 C 0.392 3.608 10 O -0.532 6.532 11 N -0.350 5.350 12 C 0.072 3.928 13 C 0.009 3.991 14 C -0.544 4.544 15 H 0.078 0.922 16 C -0.166 4.166 17 N -0.525 5.525 18 Si 0.777 3.223 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.188 1.188 22 C -0.237 4.237 23 C -0.225 4.225 24 H 0.073 0.927 25 H 0.126 0.874 26 H 0.077 0.923 27 H 0.136 0.864 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.164 0.836 32 H 0.139 0.861 33 H 0.287 0.713 34 H 0.236 0.764 35 H 0.026 0.974 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.986 16.570 -4.696 17.250 hybrid contribution -0.629 -0.594 -0.056 0.867 sum -1.614 15.976 -4.752 16.746 Atomic orbital electron populations 1.21856 0.78129 1.04341 1.02019 1.47024 1.07428 1.04344 1.78695 1.21390 0.97878 0.83772 0.95809 1.21702 1.00689 0.95495 0.97683 1.21326 1.04929 0.98484 0.89456 1.23912 0.72648 0.77468 0.93314 1.90742 1.50502 1.55339 1.48660 1.84503 1.70002 1.40086 1.37986 1.16212 0.84971 0.81604 0.77970 1.90770 1.14220 1.87221 1.61019 1.44815 1.09965 1.04333 1.75866 1.20526 0.92532 0.81319 0.98382 1.19275 0.96553 0.91860 0.91367 1.20663 0.95496 1.45903 0.92381 0.92237 1.25621 0.97303 0.93595 1.00078 1.70113 1.22230 1.43566 1.16586 0.85730 0.79885 0.78512 0.78160 1.20354 1.21871 1.18847 1.22964 0.97470 0.96379 1.06936 1.22930 0.99646 1.05054 0.94917 0.92686 0.87409 0.92254 0.86421 0.91550 0.94841 0.90859 0.83640 0.86140 0.71301 0.76359 0.97443 0.90965 0.93403 0.90815 0.90197 0.89602 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.96 10.12 127.77 1.29 3.25 16 2 N -0.64 -20.66 2.87 -864.92 -2.49 -23.14 16 3 C 0.13 3.30 5.42 86.38 0.47 3.77 16 4 C -0.12 -2.73 4.83 30.60 0.15 -2.58 16 5 C -0.10 -1.62 5.81 29.85 0.17 -1.45 16 6 C 0.48 9.50 8.33 71.24 0.59 10.09 16 7 O -0.56 -16.16 16.74 21.98 0.37 -15.79 16 8 O -0.51 -6.93 13.42 -51.40 -0.69 -7.62 16 9 C 0.69 30.61 8.27 179.06 1.48 32.09 16 10 O -0.65 -33.68 15.91 -3.98 -0.06 -33.75 16 11 N -0.70 -31.72 4.95 -478.52 -2.37 -34.09 16 12 C 0.20 9.91 4.61 86.38 0.40 10.31 16 13 C 0.01 0.49 2.08 -52.93 -0.11 0.38 16 14 C -0.51 -25.58 8.26 25.60 0.21 -25.37 16 15 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 16 C 0.04 1.83 5.29 84.65 0.45 2.27 16 17 N -0.89 -48.32 10.17 21.45 0.22 -48.10 16 18 Si 0.95 40.59 29.54 68.60 2.03 42.62 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 22 C -0.20 -8.74 9.96 30.62 0.30 -8.43 16 23 C -0.19 -7.78 9.92 30.62 0.30 -7.48 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.11 1.78 8.03 -2.38 -0.02 1.76 16 26 H 0.06 1.58 6.57 -2.39 -0.02 1.56 16 27 H 0.12 1.82 8.07 -2.39 -0.02 1.80 16 28 H 0.07 1.91 7.36 -2.39 -0.02 1.90 16 29 H 0.03 1.08 8.10 -2.39 -0.02 1.06 16 30 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 31 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.43 2.52 9.10 -74.06 -0.67 1.84 16 34 H 0.40 17.18 5.73 -92.71 -0.53 16.65 16 35 H 0.01 0.38 8.08 -2.38 -0.02 0.36 16 36 H 0.07 4.19 5.97 -2.39 -0.01 4.17 16 37 H 0.26 13.76 8.32 -92.71 -0.77 12.99 16 38 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 39 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.09 3.35 8.14 -2.38 -0.02 3.33 16 41 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -72.90 346.06 2.56 -70.34 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.16 Total: 32.67 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 5.71 Total: 16.86 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -4.64 Total: -105.33 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -0.39 Total: -57.15 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -72.90 2.56 -70.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340483059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.777 kcal (2) G-P(sol) polarization free energy of solvation -72.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds