Wall clock time and date at job start Tue Mar 31 2020 06:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46501 * 109.47452 * 2 1 4 4 C 1.36735 * 127.14148 * 93.20066 * 3 2 1 5 5 C 1.50707 * 126.34533 * 0.02562 * 4 3 2 6 6 O 1.42896 * 109.47141 * 269.71347 * 5 4 3 7 7 N 1.30291 * 107.31044 * 179.74350 * 4 3 2 8 8 N 1.28523 * 110.05170 * 0.25839 * 7 4 3 9 9 C 1.31215 * 109.85944 * 0.02562 * 8 7 4 10 10 N 1.38593 * 126.47294 * 180.02562 * 9 8 7 11 11 C 1.46898 * 111.00317 * 105.90785 * 10 9 8 12 12 C 1.50699 * 109.47290 * 303.48743 * 11 10 9 13 13 H 1.08004 * 119.99854 * 4.69537 * 12 11 10 14 14 C 1.37878 * 119.99952 * 184.69788 * 12 11 10 15 15 N 1.31508 * 120.00061 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99606 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47217 * 90.00143 * 16 14 12 18 18 H 1.48505 * 109.46927 * 209.99529 * 16 14 12 19 19 H 1.48493 * 109.47492 * 329.99710 * 16 14 12 20 20 C 1.46899 * 110.99718 * 341.95607 * 10 9 8 21 21 C 1.53001 * 109.46859 * 195.77298 * 20 10 9 22 22 O 1.42892 * 109.47274 * 65.18305 * 21 20 10 23 23 C 1.42908 * 114.00105 * 180.02562 * 22 21 20 24 24 H 1.09007 * 109.47305 * 300.00401 * 1 2 3 25 25 H 1.09005 * 109.47302 * 60.00148 * 1 2 3 26 26 H 1.09005 * 109.47482 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47466 * 239.99985 * 2 1 3 28 28 H 1.09003 * 109.47380 * 119.99312 * 2 1 3 29 29 H 1.08995 * 109.47094 * 149.71264 * 5 4 3 30 30 H 1.09003 * 109.47191 * 29.71315 * 5 4 3 31 31 H 0.96702 * 113.99933 * 179.97438 * 6 5 4 32 32 H 1.09006 * 109.46595 * 63.48251 * 11 10 9 33 33 H 1.08997 * 109.46964 * 183.48189 * 11 10 9 34 34 H 0.97000 * 119.99807 * 180.02562 * 15 14 12 35 35 H 1.09004 * 109.47117 * 315.76556 * 20 10 9 36 36 H 1.09002 * 109.47515 * 75.77003 * 20 10 9 37 37 H 1.09005 * 109.47143 * 185.18027 * 21 20 10 38 38 H 1.08998 * 109.47357 * 305.17902 * 21 20 10 39 39 H 1.08994 * 109.47093 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.46902 * 299.99588 * 23 22 21 41 41 H 1.09004 * 109.47067 * 59.99301 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3509 2.1393 1.0883 5 6 2.2847 1.7083 2.5309 6 8 0.9977 2.0262 3.0644 7 7 2.7415 3.3012 0.6467 8 7 2.6737 3.3304 -0.6364 9 6 2.2320 2.1794 -1.0858 10 7 2.0282 1.8367 -2.4131 11 6 3.0731 0.9191 -2.8865 12 6 4.4262 1.5499 -2.6811 13 1 4.5078 2.5001 -2.1742 14 6 5.5602 0.9139 -3.1402 15 7 5.4609 -0.2433 -3.7570 16 14 7.2373 1.6962 -2.8862 17 1 7.8059 1.2393 -1.5926 18 1 8.1427 1.2966 -3.9934 19 1 7.0969 3.1744 -2.8706 20 6 1.9557 3.0342 -3.2609 21 6 1.3502 2.6636 -4.6162 22 8 -0.0056 2.2505 -4.4353 23 6 -0.6670 1.8799 -5.6468 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8901 29 1 3.0533 2.2296 3.1014 30 1 2.4498 0.6329 2.5968 31 1 0.8835 1.7759 3.9914 32 1 3.0184 -0.0141 -2.3257 33 1 2.9244 0.7152 -3.9468 34 1 6.2587 -0.6909 -4.0797 35 1 1.3308 3.7848 -2.7768 36 1 2.9581 3.4362 -3.4084 37 1 1.3809 3.5300 -5.2770 38 1 1.9225 1.8485 -5.0592 39 1 -1.6906 1.5787 -5.4244 40 1 -0.6781 2.7298 -6.3292 41 1 -0.1364 1.0484 -6.1107 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340877201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:32 Heat of formation + Delta-G solvation = -2.335781 kcal Electronic energy + Delta-G solvation = -23910.830217 eV Core-core repulsion = 20442.209899 eV Total energy + Delta-G solvation = -3468.620319 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.27267 -37.94043 -36.87404 -36.27869 -35.06749 -32.65972 -30.49222 -30.17968 -28.98289 -27.07970 -25.92600 -25.49753 -23.73612 -22.97938 -21.77859 -20.03804 -19.62792 -17.61634 -17.00413 -16.30587 -16.08968 -15.99530 -15.46086 -14.96535 -14.66924 -14.52290 -14.36580 -14.15152 -13.79481 -13.44538 -12.87539 -12.70161 -12.17713 -12.06592 -11.99561 -11.61999 -11.45636 -11.19891 -11.08413 -10.99352 -10.76145 -10.58531 -10.40605 -10.29501 -10.18075 -9.96223 -9.61427 -9.42869 -9.22115 -8.76605 -8.56537 -7.41751 -6.18685 -4.26435 2.37997 2.87155 3.23762 3.30403 3.38422 3.54074 4.23366 4.33768 4.34217 4.60486 4.90554 4.97073 5.01962 5.14758 5.28201 5.37589 5.46525 5.51365 5.57784 5.71267 5.78632 5.80542 5.86600 5.89579 5.95851 5.99496 6.17849 6.34707 6.45358 6.63208 6.74124 6.96130 7.24729 7.27313 7.49225 7.54061 7.68924 7.78216 7.99404 8.17826 8.84509 9.41849 9.49160 10.87494 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.008021 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.891910 B = 3489.949458 C = 5171.183467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.465 5.465 4 C 0.141 3.859 5 C 0.177 3.823 6 O -0.565 6.565 7 N -0.269 5.269 8 N -0.336 5.336 9 C 0.422 3.578 10 N -0.459 5.459 11 C 0.190 3.810 12 C -0.556 4.556 13 H 0.071 0.929 14 C 0.070 3.930 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.270 1.270 20 C 0.080 3.920 21 C 0.067 3.933 22 O -0.380 6.380 23 C 0.032 3.968 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.382 0.618 32 H 0.030 0.970 33 H 0.053 0.947 34 H 0.264 0.736 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.033 0.967 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.707 -1.553 5.579 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.160 5.160 4 C -0.126 4.126 5 C 0.097 3.903 6 O -0.370 6.370 7 N -0.111 5.111 8 N -0.181 5.181 9 C 0.066 3.934 10 N -0.183 5.183 11 C 0.066 3.934 12 C -0.595 4.595 13 H 0.090 0.910 14 C -0.134 4.134 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.195 1.195 20 C -0.048 4.048 21 C -0.009 4.009 22 O -0.299 6.299 23 C -0.065 4.065 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.229 0.771 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.052 0.948 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.734 -0.350 5.012 10.954 hybrid contribution 1.510 -1.073 0.268 1.871 sum -8.225 -1.423 5.280 9.877 Atomic orbital electron populations 1.22096 0.94036 1.02516 1.03521 1.21794 0.95657 0.79370 1.04453 1.45980 1.50654 1.13593 1.05796 1.23815 1.07889 0.90456 0.90424 1.19955 0.86026 0.98421 0.85901 1.86579 1.33325 1.86066 1.31029 1.73781 1.16849 1.16364 1.04131 1.74635 1.21208 1.19842 1.02431 1.22496 0.95262 0.87142 0.88511 1.59299 1.47020 1.16720 0.95240 1.20012 0.86014 0.90266 0.97101 1.21872 0.91690 1.07465 1.38501 0.91046 1.24907 0.99335 0.94710 0.94398 1.69931 1.29629 1.15191 1.38140 0.86571 0.83543 0.80187 0.77761 1.20660 1.21058 1.19450 1.21911 1.01048 0.90576 0.91249 1.22664 0.82453 0.98696 0.97131 1.87969 1.25493 1.86595 1.29827 1.22655 0.97510 0.98450 0.87859 0.92034 0.91060 0.91096 0.88080 0.89891 0.90302 0.92152 0.77105 0.95185 0.92952 0.92647 0.90782 0.90045 0.93221 0.92134 0.90364 0.94819 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 10.24 37.15 0.38 -1.84 16 2 C 0.11 1.72 6.77 -4.05 -0.03 1.70 16 3 N -0.46 -9.16 2.81 -114.08 -0.32 -9.48 16 4 C 0.14 2.74 7.70 -154.02 -1.19 1.56 16 5 C 0.18 2.37 7.41 36.01 0.27 2.64 16 6 O -0.57 -7.08 13.64 -35.23 -0.48 -7.56 16 7 N -0.27 -6.13 12.18 32.99 0.40 -5.73 16 8 N -0.34 -8.12 10.80 30.32 0.33 -7.79 16 9 C 0.42 9.53 5.66 -318.86 -1.80 7.72 16 10 N -0.46 -10.06 4.65 -175.87 -0.82 -10.88 16 11 C 0.19 4.63 4.96 -4.98 -0.02 4.61 16 12 C -0.56 -15.06 7.53 -34.44 -0.26 -15.32 16 13 H 0.07 2.04 6.40 -52.48 -0.34 1.71 16 14 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 15 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 16 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.08 1.63 4.72 -3.82 -0.02 1.61 16 21 C 0.07 1.19 6.09 37.16 0.23 1.41 16 22 O -0.38 -6.64 10.65 -35.23 -0.38 -7.02 16 23 C 0.03 0.42 11.01 101.05 1.11 1.53 16 24 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 1.72 6.18 -51.93 -0.32 1.40 16 28 H 0.08 1.06 7.16 -51.93 -0.37 0.68 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.65 7.20 -51.93 -0.37 0.27 16 31 H 0.38 2.43 9.12 45.56 0.42 2.85 16 32 H 0.03 0.77 6.26 -51.93 -0.33 0.44 16 33 H 0.05 1.33 6.38 -51.93 -0.33 1.00 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.07 1.51 7.82 -51.93 -0.41 1.11 16 36 H 0.08 1.80 6.82 -51.93 -0.35 1.44 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.13 6.46 -51.93 -0.34 0.80 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 339.66 15.07 5.12 5.12 Total: -1.00 -34.17 339.66 -7.12 -41.29 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.26 Total: 2.18 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -1.43 Total: 7.43 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.33 Total: -58.12 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.86 Total: -14.57 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.17 -7.12 -41.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340877201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.957 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds