Wall clock time and date at job start Tue Mar 31 2020 06:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46501 * 109.47452 * 2 1 4 4 C 1.36735 * 127.14148 * 93.20066 * 3 2 1 5 5 C 1.50707 * 126.34533 * 0.02562 * 4 3 2 6 6 O 1.42896 * 109.47141 * 269.71347 * 5 4 3 7 7 N 1.30291 * 107.31044 * 179.74350 * 4 3 2 8 8 N 1.28523 * 110.05170 * 0.25839 * 7 4 3 9 9 C 1.31215 * 109.85944 * 0.02562 * 8 7 4 10 10 N 1.38593 * 126.47294 * 180.02562 * 9 8 7 11 11 C 1.46898 * 111.00317 * 105.90785 * 10 9 8 12 12 C 1.50699 * 109.47290 * 303.48743 * 11 10 9 13 13 H 1.08004 * 119.99854 * 4.69537 * 12 11 10 14 14 C 1.37878 * 119.99952 * 184.69788 * 12 11 10 15 15 N 1.31508 * 120.00061 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99606 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47217 * 90.00143 * 16 14 12 18 18 H 1.48505 * 109.46927 * 209.99529 * 16 14 12 19 19 H 1.48493 * 109.47492 * 329.99710 * 16 14 12 20 20 C 1.46899 * 110.99718 * 341.95607 * 10 9 8 21 21 C 1.53001 * 109.46859 * 195.77298 * 20 10 9 22 22 O 1.42892 * 109.47274 * 65.18305 * 21 20 10 23 23 C 1.42908 * 114.00105 * 180.02562 * 22 21 20 24 24 H 1.09007 * 109.47305 * 300.00401 * 1 2 3 25 25 H 1.09005 * 109.47302 * 60.00148 * 1 2 3 26 26 H 1.09005 * 109.47482 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47466 * 239.99985 * 2 1 3 28 28 H 1.09003 * 109.47380 * 119.99312 * 2 1 3 29 29 H 1.08995 * 109.47094 * 149.71264 * 5 4 3 30 30 H 1.09003 * 109.47191 * 29.71315 * 5 4 3 31 31 H 0.96702 * 113.99933 * 179.97438 * 6 5 4 32 32 H 1.09006 * 109.46595 * 63.48251 * 11 10 9 33 33 H 1.08997 * 109.46964 * 183.48189 * 11 10 9 34 34 H 0.97000 * 119.99807 * 180.02562 * 15 14 12 35 35 H 1.09004 * 109.47117 * 315.76556 * 20 10 9 36 36 H 1.09002 * 109.47515 * 75.77003 * 20 10 9 37 37 H 1.09005 * 109.47143 * 185.18027 * 21 20 10 38 38 H 1.08998 * 109.47357 * 305.17902 * 21 20 10 39 39 H 1.08994 * 109.47093 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.46902 * 299.99588 * 23 22 21 41 41 H 1.09004 * 109.47067 * 59.99301 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3509 2.1393 1.0883 5 6 2.2847 1.7083 2.5309 6 8 0.9977 2.0262 3.0644 7 7 2.7415 3.3012 0.6467 8 7 2.6737 3.3304 -0.6364 9 6 2.2320 2.1794 -1.0858 10 7 2.0282 1.8367 -2.4131 11 6 3.0731 0.9191 -2.8865 12 6 4.4262 1.5499 -2.6811 13 1 4.5078 2.5001 -2.1742 14 6 5.5602 0.9139 -3.1402 15 7 5.4609 -0.2433 -3.7570 16 14 7.2373 1.6962 -2.8862 17 1 7.8059 1.2393 -1.5926 18 1 8.1427 1.2966 -3.9934 19 1 7.0969 3.1744 -2.8706 20 6 1.9557 3.0342 -3.2609 21 6 1.3502 2.6636 -4.6162 22 8 -0.0056 2.2505 -4.4353 23 6 -0.6670 1.8799 -5.6468 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8901 29 1 3.0533 2.2296 3.1014 30 1 2.4498 0.6329 2.5968 31 1 0.8835 1.7759 3.9914 32 1 3.0184 -0.0141 -2.3257 33 1 2.9244 0.7152 -3.9468 34 1 6.2587 -0.6909 -4.0797 35 1 1.3308 3.7848 -2.7768 36 1 2.9581 3.4362 -3.4084 37 1 1.3809 3.5300 -5.2770 38 1 1.9225 1.8485 -5.0592 39 1 -1.6906 1.5787 -5.4244 40 1 -0.6781 2.7298 -6.3292 41 1 -0.1364 1.0484 -6.1107 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340877201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:31 Heat of formation + Delta-G solvation = -28.203217 kcal Electronic energy + Delta-G solvation = -23911.951913 eV Core-core repulsion = 20442.209899 eV Total energy + Delta-G solvation = -3469.742015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.86652 -39.46073 -38.01789 -37.67196 -36.46456 -34.73062 -31.92688 -31.53181 -30.60544 -28.76346 -27.18446 -26.97196 -25.20883 -24.63023 -23.38393 -21.46600 -21.28244 -18.88669 -18.63176 -17.94492 -17.55257 -17.45836 -16.98498 -16.52878 -16.18699 -15.98580 -15.66728 -15.27555 -15.11196 -14.97552 -14.66872 -14.00357 -13.82787 -13.31942 -13.26754 -13.19702 -12.97735 -12.81341 -12.63831 -12.59219 -12.33181 -12.21888 -12.16742 -11.91159 -11.79974 -11.43061 -11.04046 -10.97247 -10.69926 -10.55911 -10.42927 -9.18295 -8.27879 -6.42212 0.85550 1.29203 1.32018 1.40918 1.43736 1.89377 2.31761 2.92789 3.00175 3.01514 3.23451 3.67588 3.91328 3.96832 4.09575 4.11928 4.18806 4.27045 4.31650 4.43210 4.51616 4.58759 4.62684 4.64835 4.72472 4.82333 4.87403 4.92727 4.99559 5.12277 5.17466 5.24026 5.25465 5.62747 5.68976 5.84608 5.98603 6.35045 6.46301 6.72984 6.91482 7.28282 7.84991 8.76587 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.008021 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.891910 B = 3489.949458 C = 5171.183467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.101 3.899 3 N -0.466 5.466 4 C 0.154 3.846 5 C 0.180 3.820 6 O -0.581 6.581 7 N -0.314 5.314 8 N -0.369 5.369 9 C 0.398 3.602 10 N -0.450 5.450 11 C 0.209 3.791 12 C -0.562 4.562 13 H 0.051 0.949 14 C 0.031 3.969 15 N -0.912 5.912 16 Si 0.945 3.055 17 H -0.279 1.279 18 H -0.271 1.271 19 H -0.278 1.278 20 C 0.082 3.918 21 C 0.079 3.921 22 O -0.403 6.403 23 C 0.026 3.974 24 H 0.063 0.937 25 H 0.043 0.957 26 H 0.104 0.896 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.410 0.590 32 H 0.019 0.981 33 H 0.040 0.960 34 H 0.268 0.732 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.332 -2.594 6.715 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 N -0.161 5.161 4 C -0.115 4.115 5 C 0.100 3.900 6 O -0.391 6.391 7 N -0.155 5.155 8 N -0.214 5.214 9 C 0.040 3.960 10 N -0.174 5.174 11 C 0.084 3.916 12 C -0.601 4.601 13 H 0.070 0.930 14 C -0.171 4.171 15 N -0.551 5.551 16 Si 0.770 3.230 17 H -0.205 1.205 18 H -0.196 1.196 19 H -0.203 1.203 20 C -0.045 4.045 21 C 0.002 3.998 22 O -0.322 6.322 23 C -0.070 4.070 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.138 0.862 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.262 0.738 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.379 -1.403 6.172 12.157 hybrid contribution 1.615 -0.766 0.005 1.787 sum -8.765 -2.169 6.178 10.940 Atomic orbital electron populations 1.22000 0.92276 1.04310 1.02197 1.22138 0.97065 0.77435 1.05344 1.46336 1.49942 1.14718 1.05070 1.25034 1.04406 0.89263 0.92748 1.20169 0.86988 1.00518 0.82332 1.86494 1.32482 1.86507 1.33578 1.73689 1.19438 1.18725 1.03671 1.74495 1.22087 1.21274 1.03571 1.22631 0.96475 0.87762 0.89136 1.59313 1.45730 1.16895 0.95478 1.19645 0.85705 0.90162 0.96069 1.21939 0.93198 1.06742 1.38207 0.93050 1.25510 1.02080 0.95177 0.94305 1.69989 1.30563 1.15908 1.38661 0.85760 0.80374 0.78802 0.78017 1.20474 1.19612 1.20313 1.21876 0.99945 0.90126 0.92576 1.22478 0.82671 0.99232 0.95437 1.87919 1.25037 1.86889 1.32405 1.22893 0.97996 0.99324 0.86761 0.91752 0.93816 0.87702 0.89918 0.86186 0.88777 0.88639 0.73770 0.96351 0.94162 0.92257 0.91244 0.92378 0.90494 0.93533 0.88433 0.92872 0.94168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 10.24 71.98 0.74 -3.04 16 2 C 0.10 3.01 6.77 86.38 0.58 3.60 16 3 N -0.47 -18.16 2.81 -514.85 -1.45 -19.61 16 4 C 0.15 5.83 7.70 137.64 1.06 6.89 16 5 C 0.18 4.26 7.41 71.24 0.53 4.79 16 6 O -0.58 -12.66 13.64 -148.98 -2.03 -14.69 16 7 N -0.31 -14.49 12.18 -49.54 -0.60 -15.09 16 8 N -0.37 -18.45 10.80 -58.00 -0.63 -19.08 16 9 C 0.40 18.40 5.66 260.11 1.47 19.87 16 10 N -0.45 -20.40 4.65 -710.34 -3.30 -23.70 16 11 C 0.21 10.51 4.96 85.56 0.42 10.93 16 12 C -0.56 -31.18 7.53 25.60 0.19 -30.99 16 13 H 0.05 3.05 6.40 -2.91 -0.02 3.03 16 14 C 0.03 1.68 5.46 84.66 0.46 2.15 16 15 N -0.91 -51.36 13.29 21.45 0.28 -51.08 16 16 Si 0.94 44.79 29.54 68.60 2.03 46.81 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 20 C 0.08 3.50 4.72 86.30 0.41 3.91 16 21 C 0.08 2.80 6.09 71.98 0.44 3.24 16 22 O -0.40 -13.95 10.65 -148.98 -1.59 -15.54 16 23 C 0.03 0.65 11.01 113.37 1.25 1.90 16 24 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 25 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.08 2.79 6.18 -2.39 -0.01 2.78 16 28 H 0.12 2.64 7.16 -2.39 -0.02 2.62 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.10 1.61 7.20 -2.39 -0.02 1.59 16 31 H 0.41 3.62 9.12 -74.06 -0.68 2.94 16 32 H 0.02 0.97 6.26 -2.38 -0.01 0.95 16 33 H 0.04 2.11 6.38 -2.39 -0.02 2.10 16 34 H 0.27 14.27 8.31 -92.71 -0.77 13.49 16 35 H 0.07 2.97 7.82 -2.38 -0.02 2.95 16 36 H 0.06 2.71 6.82 -2.39 -0.02 2.69 16 37 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.05 1.78 6.46 -2.39 -0.02 1.76 16 39 H 0.10 2.01 8.14 -2.39 -0.02 2.00 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -76.01 339.66 0.64 -75.37 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.37 Total: 13.36 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 7.55 Total: 23.24 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -5.69 Total: -128.56 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -3.62 Total: -30.22 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -76.01 0.64 -75.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340877201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.171 kcal (2) G-P(sol) polarization free energy of solvation -76.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds