Wall clock time and date at job start Tue Mar 31 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46900 * 2 1 4 4 C 1.53000 * 109.47346 * 239.99412 * 2 1 3 5 5 N 1.46504 * 109.46911 * 64.99948 * 4 2 1 6 6 C 1.34772 * 120.00184 * 179.97438 * 5 4 2 7 7 O 1.21586 * 119.99916 * 355.02336 * 6 5 4 8 8 N 1.34775 * 120.00435 * 175.01379 * 6 5 4 9 9 C 1.46931 * 120.62640 * 4.94769 * 8 6 5 10 10 C 1.53618 * 108.54277 * 126.36684 * 9 8 6 11 11 C 1.53040 * 109.24260 * 54.85368 * 10 9 8 12 12 C 1.53032 * 109.53847 * 298.51148 * 11 10 9 13 13 H 1.09001 * 109.49843 * 301.40879 * 12 11 10 14 14 C 1.50703 * 109.52677 * 181.33315 * 12 11 10 15 15 H 1.08005 * 119.99445 * 0.14447 * 14 12 11 16 16 C 1.37871 * 120.00375 * 180.14558 * 14 12 11 17 17 N 1.31515 * 119.99964 * 179.97438 * 16 14 12 18 18 Si 1.86797 * 119.99984 * 359.97438 * 16 14 12 19 19 H 1.48505 * 109.47180 * 89.99934 * 18 16 14 20 20 H 1.48504 * 109.47300 * 209.99833 * 18 16 14 21 21 H 1.48499 * 109.47380 * 330.00266 * 18 16 14 22 22 C 1.46918 * 120.63520 * 185.22318 * 8 6 5 23 23 C 1.50705 * 109.46999 * 119.99615 * 2 1 3 24 24 O 1.20821 * 119.99843 * 120.00246 * 23 2 1 25 25 O 1.34226 * 119.99879 * 300.00123 * 23 2 1 26 26 H 1.09007 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47253 * 300.00383 * 1 2 3 28 28 H 1.08993 * 109.47054 * 60.00364 * 1 2 3 29 29 H 1.08997 * 109.47011 * 184.99978 * 4 2 1 30 30 H 1.08994 * 109.47032 * 305.00118 * 4 2 1 31 31 H 0.97001 * 119.99865 * 0.02562 * 5 4 2 32 32 H 1.08999 * 109.58179 * 246.20136 * 9 8 6 33 33 H 1.09004 * 109.58476 * 6.62135 * 9 8 6 34 34 H 1.09004 * 109.63808 * 294.86298 * 10 9 8 35 35 H 1.09008 * 109.45620 * 174.73855 * 10 9 8 36 36 H 1.09006 * 109.45648 * 178.48782 * 11 10 9 37 37 H 1.09002 * 109.46193 * 58.53506 * 11 10 9 38 38 H 0.97001 * 119.99881 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.58493 * 353.37530 * 22 8 6 40 40 H 1.08998 * 109.58860 * 113.79975 * 22 8 6 41 41 H 0.96700 * 116.99789 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 1.6525 0.0352 -2.4424 6 6 1.9965 -0.4133 -3.6658 7 8 2.7047 -1.3954 -3.7764 8 7 1.5553 0.2267 -4.7669 9 6 0.7894 1.4751 -4.6506 10 6 1.4700 2.5481 -5.5140 11 6 1.6103 2.0283 -6.9466 12 6 2.4900 0.7761 -6.9528 13 1 3.4678 1.0163 -6.5351 14 6 2.6549 0.2834 -8.3675 15 1 2.1817 0.8119 -9.1819 16 6 3.4098 -0.8419 -8.6220 17 7 3.5532 -1.2720 -9.8565 18 14 4.2288 -1.7554 -7.2135 19 1 3.3049 -2.7958 -6.6946 20 1 5.4759 -2.3988 -7.6994 21 1 4.5566 -0.7981 -6.1267 22 6 1.8258 -0.3140 -6.1059 23 6 2.0323 -0.7104 1.2306 24 8 2.7270 -1.6927 1.1198 25 8 1.7080 -0.2517 2.4496 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 3.1263 -0.7995 -1.2054 30 1 1.6055 -1.7199 -1.2950 31 1 1.1489 0.8592 -2.3518 32 1 -0.2298 1.3125 -5.0010 33 1 0.7729 1.7980 -3.6096 34 1 2.4573 2.7716 -5.1097 35 1 0.8631 3.4535 -5.5133 36 1 2.0686 2.7973 -7.5685 37 1 0.6248 1.7817 -7.3416 38 1 4.0846 -2.0635 -10.0356 39 1 2.4934 -1.1719 -6.0256 40 1 0.8894 -0.6195 -6.5727 41 1 2.0541 -0.7404 3.2089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341432227.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:58 Heat of formation + Delta-G solvation = -120.028392 kcal Electronic energy + Delta-G solvation = -23210.315648 eV Core-core repulsion = 19704.299044 eV Total energy + Delta-G solvation = -3506.016604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83374 -39.98228 -37.38521 -36.57745 -35.77753 -33.59262 -32.47149 -31.76645 -30.41308 -26.97909 -25.23637 -25.15827 -23.79843 -22.05170 -20.83140 -20.25260 -19.07188 -18.41407 -17.85502 -17.06620 -16.69825 -16.22598 -15.70903 -15.30896 -14.86928 -14.23513 -14.06211 -14.01797 -13.82067 -13.59872 -13.29665 -12.91977 -12.85930 -12.64289 -12.44386 -12.16337 -11.93898 -11.72484 -11.55673 -11.30048 -11.03670 -10.82346 -10.62240 -10.37429 -10.08160 -9.82091 -9.65730 -9.22450 -9.07078 -9.03227 -8.55614 -7.96884 -6.07046 -4.08914 1.82247 2.39702 3.11696 3.44185 3.52449 3.53923 3.66830 4.12283 4.15516 4.40469 4.47609 4.59386 4.94434 5.06804 5.24689 5.25860 5.29491 5.30948 5.42699 5.55684 5.70998 5.73093 5.79878 5.97633 6.09936 6.10352 6.17026 6.39800 6.49872 6.56552 6.60449 6.73261 6.87736 7.12826 7.30094 7.47829 7.49814 7.76291 8.23679 8.50853 8.92143 8.95762 9.54818 11.04694 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.004306 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.403244 B = 6500.293332 C = 7391.868366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.116 0.884 4 C 0.153 3.847 5 N -0.753 5.753 6 C 0.702 3.298 7 O -0.587 6.587 8 N -0.624 5.624 9 C 0.116 3.884 10 C -0.136 4.136 11 C -0.100 4.100 12 C 0.004 3.996 13 H 0.030 0.970 14 C -0.517 4.517 15 H 0.077 0.923 16 C 0.073 3.927 17 N -0.897 5.897 18 Si 0.881 3.119 19 H -0.273 1.273 20 H -0.297 1.297 21 H -0.261 1.261 22 C 0.119 3.881 23 C 0.487 3.513 24 O -0.505 6.505 25 O -0.515 6.515 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.393 0.607 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.265 0.735 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.740 7.538 22.538 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.134 0.866 4 C 0.028 3.972 5 N -0.414 5.414 6 C 0.404 3.596 7 O -0.464 6.464 8 N -0.361 5.361 9 C -0.008 4.008 10 C -0.174 4.174 11 C -0.137 4.137 12 C -0.016 4.016 13 H 0.048 0.952 14 C -0.555 4.555 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.711 3.289 19 H -0.200 1.200 20 H -0.225 1.225 21 H -0.186 1.186 22 C -0.002 4.002 23 C 0.328 3.672 24 O -0.392 6.392 25 O -0.328 6.328 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.229 0.771 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -8.105 6.582 21.946 24.303 hybrid contribution 0.490 -0.511 1.284 1.467 sum -7.615 6.070 23.230 25.189 Atomic orbital electron populations 1.21811 0.91228 1.03616 1.03600 1.21166 0.98987 1.01495 0.89807 0.86565 1.20893 1.01027 0.94595 0.80723 1.45185 1.62686 1.28865 1.04619 1.15877 0.80449 0.83061 0.80245 1.90933 1.41336 1.28712 1.85418 1.47672 1.57207 1.25053 1.06150 1.21649 0.95389 0.84826 0.98914 1.22065 1.00541 0.96932 0.97911 1.21425 1.00421 0.98498 0.93381 1.19502 0.94726 0.91485 0.95888 0.95151 1.20951 1.32025 1.11729 0.90777 0.90496 1.25044 0.95547 0.96938 0.95449 1.69895 1.40122 1.24397 1.19027 0.86966 0.78940 0.80970 0.82036 1.19996 1.22450 1.18627 1.22508 1.00739 0.98971 0.77993 1.23118 0.76946 0.82445 0.84653 1.90791 1.35355 1.25894 1.87173 1.84502 1.72349 1.59102 1.16797 0.91573 0.90840 0.90720 0.90515 0.90702 0.77051 0.91482 0.91815 0.92015 0.91727 0.92249 0.92499 0.92532 0.90234 0.91724 0.72921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.00 37.16 0.33 -0.56 16 2 C -0.09 -0.76 2.86 -91.77 -0.26 -1.02 16 3 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.15 1.87 4.42 -4.04 -0.02 1.86 16 5 N -0.75 -9.87 5.19 -65.23 -0.34 -10.21 16 6 C 0.70 13.33 8.30 -86.92 -0.72 12.61 16 7 O -0.59 -14.11 15.77 5.29 0.08 -14.02 16 8 N -0.62 -11.52 2.97 -178.24 -0.53 -12.04 16 9 C 0.12 1.53 6.42 -3.49 -0.02 1.51 16 10 C -0.14 -1.92 6.10 -26.39 -0.16 -2.08 16 11 C -0.10 -1.84 5.11 -26.69 -0.14 -1.97 16 12 C 0.00 0.09 1.84 -91.66 -0.17 -0.08 16 13 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 14 C -0.52 -14.41 9.15 -34.44 -0.32 -14.72 16 15 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 16 C 0.07 2.15 5.45 -17.82 -0.10 2.05 16 17 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 18 Si 0.88 23.91 24.32 -169.99 -4.13 19.78 16 19 H -0.27 -7.53 6.92 56.52 0.39 -7.13 16 20 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 21 H -0.26 -7.17 6.53 56.52 0.37 -6.80 16 22 C 0.12 2.69 5.11 -3.72 -0.02 2.67 16 23 C 0.49 4.47 7.63 36.01 0.27 4.74 16 24 O -0.51 -6.63 16.68 -18.75 -0.31 -6.94 16 25 O -0.52 -3.19 13.33 -39.25 -0.52 -3.71 16 26 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.07 0.37 8.11 -51.93 -0.42 -0.06 16 28 H 0.07 0.41 7.18 -51.93 -0.37 0.03 16 29 H 0.08 1.11 7.96 -51.93 -0.41 0.70 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.39 3.74 5.14 -40.82 -0.21 3.53 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.61 5.64 -51.93 -0.29 0.32 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 39 H 0.08 2.06 2.31 -51.93 -0.12 1.94 16 40 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.41 0.97 9.10 45.56 0.41 1.38 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -37.34 326.35 -6.56 -43.90 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.19 Total: 0.32 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -1.31 Total: 5.00 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.09 Total: -49.24 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.75 Total: -24.68 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -4.13 Total: 19.78 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.34 -6.56 -43.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341432227.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.126 kcal (2) G-P(sol) polarization free energy of solvation -37.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds