Wall clock time and date at job start Tue Mar 31 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46900 * 2 1 4 4 C 1.53000 * 109.47346 * 239.99412 * 2 1 3 5 5 N 1.46504 * 109.46911 * 64.99948 * 4 2 1 6 6 C 1.34772 * 120.00184 * 179.97438 * 5 4 2 7 7 O 1.21586 * 119.99916 * 355.02336 * 6 5 4 8 8 N 1.34775 * 120.00435 * 175.01379 * 6 5 4 9 9 C 1.46931 * 120.62640 * 4.94769 * 8 6 5 10 10 C 1.53618 * 108.54277 * 126.36684 * 9 8 6 11 11 C 1.53040 * 109.24260 * 54.85368 * 10 9 8 12 12 C 1.53032 * 109.53847 * 298.51148 * 11 10 9 13 13 H 1.09001 * 109.49843 * 301.40879 * 12 11 10 14 14 C 1.50703 * 109.52677 * 181.33315 * 12 11 10 15 15 H 1.08005 * 119.99445 * 0.14447 * 14 12 11 16 16 C 1.37871 * 120.00375 * 180.14558 * 14 12 11 17 17 N 1.31515 * 119.99964 * 179.97438 * 16 14 12 18 18 Si 1.86797 * 119.99984 * 359.97438 * 16 14 12 19 19 H 1.48505 * 109.47180 * 89.99934 * 18 16 14 20 20 H 1.48504 * 109.47300 * 209.99833 * 18 16 14 21 21 H 1.48499 * 109.47380 * 330.00266 * 18 16 14 22 22 C 1.46918 * 120.63520 * 185.22318 * 8 6 5 23 23 C 1.50705 * 109.46999 * 119.99615 * 2 1 3 24 24 O 1.20821 * 119.99843 * 120.00246 * 23 2 1 25 25 O 1.34226 * 119.99879 * 300.00123 * 23 2 1 26 26 H 1.09007 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47253 * 300.00383 * 1 2 3 28 28 H 1.08993 * 109.47054 * 60.00364 * 1 2 3 29 29 H 1.08997 * 109.47011 * 184.99978 * 4 2 1 30 30 H 1.08994 * 109.47032 * 305.00118 * 4 2 1 31 31 H 0.97001 * 119.99865 * 0.02562 * 5 4 2 32 32 H 1.08999 * 109.58179 * 246.20136 * 9 8 6 33 33 H 1.09004 * 109.58476 * 6.62135 * 9 8 6 34 34 H 1.09004 * 109.63808 * 294.86298 * 10 9 8 35 35 H 1.09008 * 109.45620 * 174.73855 * 10 9 8 36 36 H 1.09006 * 109.45648 * 178.48782 * 11 10 9 37 37 H 1.09002 * 109.46193 * 58.53506 * 11 10 9 38 38 H 0.97001 * 119.99881 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.58493 * 353.37530 * 22 8 6 40 40 H 1.08998 * 109.58860 * 113.79975 * 22 8 6 41 41 H 0.96700 * 116.99789 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 1.6525 0.0352 -2.4424 6 6 1.9965 -0.4133 -3.6658 7 8 2.7047 -1.3954 -3.7764 8 7 1.5553 0.2267 -4.7669 9 6 0.7894 1.4751 -4.6506 10 6 1.4700 2.5481 -5.5140 11 6 1.6103 2.0283 -6.9466 12 6 2.4900 0.7761 -6.9528 13 1 3.4678 1.0163 -6.5351 14 6 2.6549 0.2834 -8.3675 15 1 2.1817 0.8119 -9.1819 16 6 3.4098 -0.8419 -8.6220 17 7 3.5532 -1.2720 -9.8565 18 14 4.2288 -1.7554 -7.2135 19 1 3.3049 -2.7958 -6.6946 20 1 5.4759 -2.3988 -7.6994 21 1 4.5566 -0.7981 -6.1267 22 6 1.8258 -0.3140 -6.1059 23 6 2.0323 -0.7104 1.2306 24 8 2.7270 -1.6927 1.1198 25 8 1.7080 -0.2517 2.4496 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 3.1263 -0.7995 -1.2054 30 1 1.6055 -1.7199 -1.2950 31 1 1.1489 0.8592 -2.3518 32 1 -0.2298 1.3125 -5.0010 33 1 0.7729 1.7980 -3.6096 34 1 2.4573 2.7716 -5.1097 35 1 0.8631 3.4535 -5.5133 36 1 2.0686 2.7973 -7.5685 37 1 0.6248 1.7817 -7.3416 38 1 4.0846 -2.0635 -10.0356 39 1 2.4934 -1.1719 -6.0256 40 1 0.8894 -0.6195 -6.5727 41 1 2.0541 -0.7404 3.2089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341432227.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:57 Heat of formation + Delta-G solvation = -149.652912 kcal Electronic energy + Delta-G solvation = -23211.600264 eV Core-core repulsion = 19704.299044 eV Total energy + Delta-G solvation = -3507.301220 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.72202 -41.23271 -38.78259 -37.35025 -36.82312 -35.37258 -33.99438 -33.07535 -32.07760 -27.94055 -26.96111 -26.25531 -24.97157 -23.55867 -21.75875 -21.59670 -20.51232 -19.23783 -19.10064 -18.83469 -17.89117 -17.14668 -16.93175 -16.61413 -16.47205 -15.61995 -15.33568 -15.23584 -15.18752 -14.92679 -14.56854 -14.38078 -14.20706 -13.76400 -13.65172 -13.19317 -13.14209 -12.89428 -12.67436 -12.49186 -12.31188 -12.19077 -12.12316 -11.84961 -11.57996 -11.55358 -11.39262 -11.04643 -10.97878 -10.79467 -10.33360 -9.42933 -8.39491 -6.40343 1.13628 1.22614 1.29248 1.43034 1.44682 2.07033 2.15015 2.21425 2.95576 3.01852 3.37510 3.77212 3.99540 4.04251 4.07729 4.17316 4.37014 4.46748 4.54071 4.59026 4.63760 4.67079 4.75962 4.85596 4.89317 4.93145 5.01953 5.14333 5.23919 5.25674 5.35629 5.42890 5.56176 5.57499 5.64472 5.71360 5.97481 6.27498 6.68962 6.93710 6.97961 7.25603 7.51105 8.76518 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.004306 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.403244 B = 6500.293332 C = 7391.868366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.148 0.852 4 C 0.154 3.846 5 N -0.723 5.723 6 C 0.695 3.305 7 O -0.646 6.646 8 N -0.626 5.626 9 C 0.108 3.892 10 C -0.127 4.127 11 C -0.098 4.098 12 C 0.003 3.997 13 H 0.011 0.989 14 C -0.509 4.509 15 H 0.054 0.946 16 C 0.031 3.969 17 N -0.937 5.937 18 Si 0.937 3.063 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.270 1.270 22 C 0.126 3.874 23 C 0.493 3.507 24 O -0.555 6.555 25 O -0.502 6.502 26 H 0.053 0.947 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.415 0.585 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.055 0.945 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.267 0.733 39 H 0.044 0.956 40 H 0.066 0.934 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.877 10.333 25.454 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 H 0.165 0.835 4 C 0.029 3.971 5 N -0.384 5.384 6 C 0.396 3.604 7 O -0.528 6.528 8 N -0.362 5.362 9 C -0.013 4.013 10 C -0.165 4.165 11 C -0.135 4.135 12 C -0.017 4.017 13 H 0.029 0.971 14 C -0.547 4.547 15 H 0.072 0.928 16 C -0.168 4.168 17 N -0.577 5.577 18 Si 0.768 3.232 19 H -0.212 1.212 20 H -0.224 1.224 21 H -0.196 1.196 22 C 0.002 3.998 23 C 0.337 3.663 24 O -0.446 6.446 25 O -0.316 6.316 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.256 0.744 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -10.295 9.463 24.935 28.588 hybrid contribution 1.102 -1.308 0.430 1.763 sum -9.194 8.155 25.364 28.185 Atomic orbital electron populations 1.21844 0.89231 1.03476 1.05351 1.21108 1.00319 1.01956 0.86946 0.83459 1.20840 0.99495 0.94533 0.82275 1.44821 1.61550 1.29221 1.02796 1.16141 0.80053 0.82516 0.81690 1.90895 1.43986 1.31461 1.86444 1.47564 1.57609 1.26727 1.04303 1.22103 0.95412 0.81963 1.01828 1.22025 1.01461 0.98708 0.94339 1.21371 0.99260 0.95867 0.97051 1.19446 0.95186 0.94150 0.92919 0.97109 1.21348 1.30049 1.10477 0.92852 0.92811 1.25567 0.96622 0.98072 0.96494 1.69978 1.41942 1.25462 1.20363 0.86088 0.77862 0.79569 0.79683 1.21234 1.22358 1.19575 1.21980 0.99801 0.97445 0.80533 1.23310 0.75786 0.81519 0.85729 1.90791 1.37740 1.28155 1.87896 1.84453 1.71752 1.58831 1.16524 0.92741 0.88789 0.89228 0.93231 0.92761 0.74407 0.89259 0.87168 0.92573 0.87115 0.92680 0.91961 0.92395 0.93783 0.91625 0.70826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.00 71.98 0.65 -0.52 16 2 C -0.08 -1.08 2.86 -11.54 -0.03 -1.11 16 3 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 4 C 0.15 3.60 4.42 86.38 0.38 3.98 16 5 N -0.72 -17.00 5.19 -478.55 -2.48 -19.49 16 6 C 0.69 25.57 8.30 179.06 1.49 27.05 16 7 O -0.65 -31.73 15.77 -3.99 -0.06 -31.79 16 8 N -0.63 -21.82 2.97 -836.09 -2.48 -24.30 16 9 C 0.11 2.32 6.42 86.51 0.56 2.88 16 10 C -0.13 -2.99 6.10 30.82 0.19 -2.81 16 11 C -0.10 -3.39 5.11 30.62 0.16 -3.24 16 12 C 0.00 0.13 1.84 -11.46 -0.02 0.11 16 13 H 0.01 0.54 7.20 -2.39 -0.02 0.53 16 14 C -0.51 -28.96 9.15 25.60 0.23 -28.73 16 15 H 0.05 3.26 7.99 -2.91 -0.02 3.24 16 16 C 0.03 1.88 5.45 84.65 0.46 2.34 16 17 N -0.94 -59.69 13.96 21.45 0.30 -59.39 16 18 Si 0.94 51.96 24.32 68.60 1.67 53.62 16 19 H -0.29 -16.16 6.92 99.48 0.69 -15.47 16 20 H -0.30 -16.07 7.11 99.48 0.71 -15.37 16 21 H -0.27 -15.17 6.53 99.48 0.65 -14.52 16 22 C 0.13 5.67 5.11 86.36 0.44 6.11 16 23 C 0.49 8.07 7.63 71.24 0.54 8.62 16 24 O -0.56 -14.48 16.68 21.98 0.37 -14.11 16 25 O -0.50 -4.65 13.33 -51.38 -0.68 -5.33 16 26 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.09 0.46 8.11 -2.39 -0.02 0.44 16 28 H 0.09 0.49 7.18 -2.39 -0.02 0.47 16 29 H 0.05 1.45 7.96 -2.39 -0.02 1.43 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.41 5.78 5.14 -92.71 -0.48 5.31 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.11 1.35 5.64 -2.38 -0.01 1.34 16 34 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.05 1.93 8.14 -2.38 -0.02 1.92 16 37 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.27 16.10 8.31 -92.71 -0.77 15.32 16 39 H 0.04 2.33 2.31 -2.39 -0.01 2.32 16 40 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.43 0.85 9.10 -74.06 -0.67 0.18 16 Total: -1.00 -87.72 326.35 1.50 -86.22 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -0.17 Total: -0.12 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 5.04 Total: 14.69 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -4.67 Total: -103.18 kcal Atomic # 8 Polarization: -50.85 SS G_CDS: -0.38 Total: -51.24 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 1.67 Total: 53.62 kcal Total: -87.72 1.50 -86.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341432227.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.432 kcal (2) G-P(sol) polarization free energy of solvation -87.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds