Wall clock time and date at job start Tue Mar 31 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46880 * 2 1 4 4 C 1.52994 * 109.46958 * 120.00019 * 2 1 3 5 5 N 1.46500 * 109.47610 * 295.00397 * 4 2 1 6 6 C 1.34772 * 120.00069 * 180.02562 * 5 4 2 7 7 O 1.21583 * 120.00269 * 355.01344 * 6 5 4 8 8 N 1.34783 * 119.99704 * 175.01655 * 6 5 4 9 9 C 1.46921 * 120.63155 * 5.21997 * 8 6 5 10 10 C 1.53195 * 108.77252 * 126.36913 * 9 8 6 11 11 C 1.53047 * 109.31071 * 54.63682 * 10 9 8 12 12 C 1.53035 * 109.53703 * 298.63435 * 11 10 9 13 13 H 1.09000 * 109.49911 * 301.41412 * 12 11 10 14 14 C 1.50702 * 109.49492 * 181.34708 * 12 11 10 15 15 H 1.08004 * 120.00234 * 0.02562 * 14 12 11 16 16 C 1.37880 * 119.99949 * 179.97438 * 14 12 11 17 17 N 1.31513 * 120.00031 * 179.97438 * 16 14 12 18 18 Si 1.86801 * 120.00099 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.47398 * 89.99248 * 18 16 14 20 20 H 1.48495 * 109.47253 * 210.00084 * 18 16 14 21 21 H 1.48508 * 109.46829 * 329.99768 * 18 16 14 22 22 C 1.46930 * 120.62708 * 184.94620 * 8 6 5 23 23 C 1.50699 * 109.47047 * 240.00112 * 2 1 3 24 24 O 1.20823 * 119.99938 * 239.99641 * 23 2 1 25 25 O 1.34234 * 119.99731 * 60.27756 * 23 2 1 26 26 H 1.09007 * 109.47114 * 59.99752 * 1 2 3 27 27 H 1.09001 * 109.47576 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47491 * 299.99671 * 1 2 3 29 29 H 1.09006 * 109.47088 * 55.00135 * 4 2 1 30 30 H 1.09003 * 109.47419 * 174.99743 * 4 2 1 31 31 H 0.97005 * 119.99657 * 359.97438 * 5 4 2 32 32 H 1.08998 * 109.59215 * 246.15679 * 9 8 6 33 33 H 1.08998 * 109.59041 * 6.58580 * 9 8 6 34 34 H 1.08996 * 109.49794 * 174.58433 * 10 9 8 35 35 H 1.08994 * 109.49733 * 294.68597 * 10 9 8 36 36 H 1.09007 * 109.45729 * 58.65562 * 11 10 9 37 37 H 1.08996 * 109.45804 * 178.61296 * 11 10 9 38 38 H 0.96996 * 120.00310 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.58511 * 353.41825 * 22 8 6 40 40 H 1.09005 * 109.58285 * 113.84142 * 22 8 6 41 41 H 0.96701 * 116.99500 * 179.71783 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6523 0.0352 2.4424 6 6 1.9963 -0.4133 3.6659 7 8 2.5483 -1.4899 3.7857 8 7 1.7283 0.3318 4.7566 9 6 0.9615 1.5796 4.6409 10 6 -0.2209 1.5237 5.6134 11 6 0.2973 1.2328 7.0239 12 6 1.0010 -0.1260 7.0404 13 1 0.3039 -0.9007 6.7211 14 6 1.4818 -0.4264 8.4367 15 1 1.3031 0.2808 9.2333 16 6 2.1489 -1.6045 8.6976 17 7 2.5689 -1.8664 9.9160 18 14 2.4574 -2.8280 7.3202 19 1 3.7580 -2.5249 6.6708 20 1 2.4914 -4.2036 7.8784 21 1 1.3677 -2.7281 6.3161 22 6 2.1923 -0.0917 6.0848 23 6 2.0323 -0.7104 -1.2305 24 8 2.7270 -1.6927 -1.1196 25 8 1.7126 -0.2485 -2.4496 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6053 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2056 31 1 1.1487 0.8594 2.3518 32 1 1.6009 2.4261 4.8913 33 1 0.5912 1.6878 3.6215 34 1 -0.7423 2.4809 5.6077 35 1 -0.9065 0.7335 5.3076 36 1 1.0018 2.0103 7.3194 37 1 -0.5396 1.2169 7.7220 38 1 3.0386 -2.6951 10.0995 39 1 2.6340 -1.0860 6.0177 40 1 2.9343 0.6157 6.4554 41 1 2.0616 -0.7351 -3.2088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341432229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:04 Heat of formation + Delta-G solvation = -120.130839 kcal Electronic energy + Delta-G solvation = -23224.733694 eV Core-core repulsion = 19718.712648 eV Total energy + Delta-G solvation = -3506.021047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83412 -39.98963 -37.40499 -36.58060 -35.77762 -33.60198 -32.47375 -31.77003 -30.44337 -26.97568 -25.24244 -25.15651 -23.80237 -22.04991 -20.82585 -20.26198 -19.07024 -18.41633 -17.84651 -17.06993 -16.69547 -16.24069 -15.70082 -15.37835 -14.69807 -14.39233 -14.07819 -13.99293 -13.75283 -13.69085 -13.17834 -13.03290 -12.78401 -12.61718 -12.51462 -12.16396 -11.93809 -11.71925 -11.55219 -11.30128 -11.03114 -10.82366 -10.61980 -10.37926 -10.08389 -9.82326 -9.65943 -9.22322 -9.07103 -9.03266 -8.55794 -7.97336 -6.07176 -4.09100 1.82083 2.39609 3.11550 3.44056 3.52240 3.53782 3.66377 4.12304 4.15620 4.40874 4.47390 4.59722 4.94129 5.06646 5.25214 5.26444 5.29601 5.33002 5.42681 5.55388 5.72712 5.73043 5.79960 5.97286 6.09852 6.10287 6.17336 6.39613 6.49883 6.56576 6.60713 6.73306 6.87602 7.13242 7.30076 7.47560 7.49662 7.76181 8.23610 8.50703 8.92040 8.95673 9.54612 11.04575 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024945 B = 0.004319 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.196192 B = 6480.826226 C = 7365.042288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.116 0.884 4 C 0.152 3.848 5 N -0.753 5.753 6 C 0.702 3.298 7 O -0.586 6.586 8 N -0.624 5.624 9 C 0.116 3.884 10 C -0.137 4.137 11 C -0.099 4.099 12 C 0.003 3.997 13 H 0.030 0.970 14 C -0.517 4.517 15 H 0.077 0.923 16 C 0.073 3.927 17 N -0.897 5.897 18 Si 0.881 3.119 19 H -0.273 1.273 20 H -0.297 1.297 21 H -0.262 1.262 22 C 0.119 3.881 23 C 0.488 3.512 24 O -0.505 6.505 25 O -0.515 6.515 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.393 0.607 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.265 0.735 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.548 9.462 -22.729 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.134 0.866 4 C 0.027 3.973 5 N -0.413 5.413 6 C 0.404 3.596 7 O -0.464 6.464 8 N -0.361 5.361 9 C -0.008 4.008 10 C -0.175 4.175 11 C -0.137 4.137 12 C -0.016 4.016 13 H 0.048 0.952 14 C -0.555 4.555 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.711 3.289 19 H -0.200 1.200 20 H -0.224 1.224 21 H -0.186 1.186 22 C -0.002 4.002 23 C 0.328 3.672 24 O -0.392 6.392 25 O -0.327 6.327 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -4.972 8.470 -22.133 24.215 hybrid contribution 0.290 -0.631 -1.269 1.446 sum -4.682 7.839 -23.402 25.120 Atomic orbital electron populations 1.21814 0.91218 1.03683 1.03596 1.21161 0.99021 1.01438 0.89798 0.86573 1.20896 1.00789 0.94857 0.80710 1.45183 1.62612 1.28938 1.04611 1.15873 0.79692 0.83813 0.80234 1.90931 1.48991 1.21355 1.85113 1.47670 1.57253 1.23800 1.07348 1.21557 0.93615 0.86962 0.98620 1.21994 0.96917 1.01190 0.97391 1.21425 0.99854 0.98811 0.93626 1.19427 0.93101 0.93910 0.95204 0.95190 1.20948 1.37167 1.04905 0.92452 0.90488 1.25047 0.94781 0.97759 0.95395 1.69891 1.38466 1.25342 1.19732 0.86965 0.80333 0.80040 0.81579 1.19987 1.22444 1.18634 1.22419 0.98940 1.00543 0.78284 1.23120 0.76940 0.82441 0.84653 1.90791 1.35358 1.25903 1.87174 1.84505 1.72374 1.59071 1.16799 0.90832 0.91537 0.90719 0.90586 0.90626 0.77049 0.91513 0.91828 0.91687 0.92032 0.92496 0.92240 0.92527 0.90243 0.91725 0.72923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.00 37.16 0.33 -0.61 16 2 C -0.09 -0.75 2.86 -91.78 -0.26 -1.02 16 3 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 4 C 0.15 1.87 4.42 -4.04 -0.02 1.85 16 5 N -0.75 -9.87 5.19 -65.23 -0.34 -10.21 16 6 C 0.70 13.33 8.30 -86.92 -0.72 12.61 16 7 O -0.59 -14.10 15.77 5.29 0.08 -14.01 16 8 N -0.62 -11.52 2.98 -178.76 -0.53 -12.06 16 9 C 0.12 1.54 6.39 -3.71 -0.02 1.51 16 10 C -0.14 -1.91 6.08 -26.61 -0.16 -2.08 16 11 C -0.10 -1.83 5.11 -26.69 -0.14 -1.97 16 12 C 0.00 0.08 1.83 -91.88 -0.17 -0.09 16 13 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 14 C -0.52 -14.40 9.15 -34.44 -0.31 -14.71 16 15 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 16 C 0.07 2.14 5.45 -17.82 -0.10 2.05 16 17 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 18 Si 0.88 23.88 24.32 -169.99 -4.13 19.75 16 19 H -0.27 -7.52 6.92 56.52 0.39 -7.13 16 20 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 21 H -0.26 -7.15 6.53 56.52 0.37 -6.78 16 22 C 0.12 2.70 5.10 -3.93 -0.02 2.68 16 23 C 0.49 4.46 7.62 36.01 0.27 4.73 16 24 O -0.51 -6.61 16.68 -18.75 -0.31 -6.92 16 25 O -0.52 -3.18 13.34 -39.27 -0.52 -3.70 16 26 H 0.07 0.38 8.12 -51.92 -0.42 -0.04 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.43 7.18 -51.93 -0.37 0.06 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.06 7.96 -51.93 -0.41 0.65 16 31 H 0.39 3.74 5.14 -40.82 -0.21 3.53 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.61 5.65 -51.93 -0.29 0.31 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 39 H 0.08 2.06 2.31 -51.93 -0.12 1.94 16 40 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.41 0.96 9.10 45.56 0.41 1.37 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -37.30 326.31 -6.57 -43.87 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.19 Total: 0.38 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -1.31 Total: 4.97 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.10 Total: -49.24 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.75 Total: -24.64 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -4.13 Total: 19.75 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.30 -6.57 -43.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341432229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.261 kcal (2) G-P(sol) polarization free energy of solvation -37.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds