Wall clock time and date at job start Tue Mar 31 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46880 * 2 1 4 4 C 1.52994 * 109.46958 * 120.00019 * 2 1 3 5 5 N 1.46500 * 109.47610 * 295.00397 * 4 2 1 6 6 C 1.34772 * 120.00069 * 180.02562 * 5 4 2 7 7 O 1.21583 * 120.00269 * 355.01344 * 6 5 4 8 8 N 1.34783 * 119.99704 * 175.01655 * 6 5 4 9 9 C 1.46921 * 120.63155 * 5.21997 * 8 6 5 10 10 C 1.53195 * 108.77252 * 126.36913 * 9 8 6 11 11 C 1.53047 * 109.31071 * 54.63682 * 10 9 8 12 12 C 1.53035 * 109.53703 * 298.63435 * 11 10 9 13 13 H 1.09000 * 109.49911 * 301.41412 * 12 11 10 14 14 C 1.50702 * 109.49492 * 181.34708 * 12 11 10 15 15 H 1.08004 * 120.00234 * 0.02562 * 14 12 11 16 16 C 1.37880 * 119.99949 * 179.97438 * 14 12 11 17 17 N 1.31513 * 120.00031 * 179.97438 * 16 14 12 18 18 Si 1.86801 * 120.00099 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.47398 * 89.99248 * 18 16 14 20 20 H 1.48495 * 109.47253 * 210.00084 * 18 16 14 21 21 H 1.48508 * 109.46829 * 329.99768 * 18 16 14 22 22 C 1.46930 * 120.62708 * 184.94620 * 8 6 5 23 23 C 1.50699 * 109.47047 * 240.00112 * 2 1 3 24 24 O 1.20823 * 119.99938 * 239.99641 * 23 2 1 25 25 O 1.34234 * 119.99731 * 60.27756 * 23 2 1 26 26 H 1.09007 * 109.47114 * 59.99752 * 1 2 3 27 27 H 1.09001 * 109.47576 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47491 * 299.99671 * 1 2 3 29 29 H 1.09006 * 109.47088 * 55.00135 * 4 2 1 30 30 H 1.09003 * 109.47419 * 174.99743 * 4 2 1 31 31 H 0.97005 * 119.99657 * 359.97438 * 5 4 2 32 32 H 1.08998 * 109.59215 * 246.15679 * 9 8 6 33 33 H 1.08998 * 109.59041 * 6.58580 * 9 8 6 34 34 H 1.08996 * 109.49794 * 174.58433 * 10 9 8 35 35 H 1.08994 * 109.49733 * 294.68597 * 10 9 8 36 36 H 1.09007 * 109.45729 * 58.65562 * 11 10 9 37 37 H 1.08996 * 109.45804 * 178.61296 * 11 10 9 38 38 H 0.96996 * 120.00310 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.58511 * 353.41825 * 22 8 6 40 40 H 1.09005 * 109.58285 * 113.84142 * 22 8 6 41 41 H 0.96701 * 116.99500 * 179.71783 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6523 0.0352 2.4424 6 6 1.9963 -0.4133 3.6659 7 8 2.5483 -1.4899 3.7857 8 7 1.7283 0.3318 4.7566 9 6 0.9615 1.5796 4.6409 10 6 -0.2209 1.5237 5.6134 11 6 0.2973 1.2328 7.0239 12 6 1.0010 -0.1260 7.0404 13 1 0.3039 -0.9007 6.7211 14 6 1.4818 -0.4264 8.4367 15 1 1.3031 0.2808 9.2333 16 6 2.1489 -1.6045 8.6976 17 7 2.5689 -1.8664 9.9160 18 14 2.4574 -2.8280 7.3202 19 1 3.7580 -2.5249 6.6708 20 1 2.4914 -4.2036 7.8784 21 1 1.3677 -2.7281 6.3161 22 6 2.1923 -0.0917 6.0848 23 6 2.0323 -0.7104 -1.2305 24 8 2.7270 -1.6927 -1.1196 25 8 1.7126 -0.2485 -2.4496 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6053 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2056 31 1 1.1487 0.8594 2.3518 32 1 1.6009 2.4261 4.8913 33 1 0.5912 1.6878 3.6215 34 1 -0.7423 2.4809 5.6077 35 1 -0.9065 0.7335 5.3076 36 1 1.0018 2.0103 7.3194 37 1 -0.5396 1.2169 7.7220 38 1 3.0386 -2.6951 10.0995 39 1 2.6340 -1.0860 6.0177 40 1 2.9343 0.6157 6.4554 41 1 2.0616 -0.7351 -3.2088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341432229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:04 Heat of formation + Delta-G solvation = -149.732778 kcal Electronic energy + Delta-G solvation = -23226.017331 eV Core-core repulsion = 19718.712648 eV Total energy + Delta-G solvation = -3507.304683 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.72494 -41.23631 -38.80438 -37.34996 -36.82284 -35.38040 -33.99919 -33.07588 -32.11085 -27.94555 -26.96432 -26.26690 -24.97322 -23.55391 -21.76796 -21.59163 -20.51070 -19.22379 -19.10897 -18.83575 -17.88460 -17.20197 -16.88058 -16.66714 -16.42710 -15.58127 -15.38753 -15.30376 -15.12436 -14.90234 -14.60412 -14.47550 -14.03457 -13.84364 -13.66355 -13.22015 -13.13401 -12.89844 -12.66822 -12.48820 -12.31861 -12.19488 -12.11620 -11.84910 -11.58031 -11.55361 -11.39293 -11.04526 -10.97657 -10.79537 -10.33464 -9.43351 -8.39499 -6.40438 1.13686 1.22649 1.29296 1.42893 1.44483 2.06836 2.15052 2.21380 2.95525 3.01797 3.37508 3.76767 3.99438 4.04411 4.07511 4.17634 4.36994 4.46425 4.54678 4.58918 4.64378 4.66501 4.76244 4.84281 4.89449 4.92617 5.02141 5.14481 5.23953 5.24735 5.35487 5.42584 5.56508 5.57602 5.64457 5.71407 5.97477 6.27487 6.68954 6.93822 6.97867 7.25501 7.51007 8.76512 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024945 B = 0.004319 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.196192 B = 6480.826226 C = 7365.042288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 H 0.151 0.849 4 C 0.153 3.847 5 N -0.723 5.723 6 C 0.695 3.305 7 O -0.646 6.646 8 N -0.626 5.626 9 C 0.108 3.892 10 C -0.127 4.127 11 C -0.098 4.098 12 C 0.003 3.997 13 H 0.011 0.989 14 C -0.509 4.509 15 H 0.054 0.946 16 C 0.031 3.969 17 N -0.937 5.937 18 Si 0.937 3.063 19 H -0.286 1.286 20 H -0.296 1.296 21 H -0.270 1.270 22 C 0.126 3.874 23 C 0.494 3.506 24 O -0.555 6.555 25 O -0.502 6.502 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.415 0.585 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.267 0.733 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.323 12.476 -25.688 29.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 H 0.168 0.832 4 C 0.028 3.972 5 N -0.384 5.384 6 C 0.396 3.604 7 O -0.528 6.528 8 N -0.362 5.362 9 C -0.013 4.013 10 C -0.165 4.165 11 C -0.136 4.136 12 C -0.017 4.017 13 H 0.029 0.971 14 C -0.547 4.547 15 H 0.072 0.928 16 C -0.168 4.168 17 N -0.577 5.577 18 Si 0.768 3.232 19 H -0.213 1.213 20 H -0.223 1.223 21 H -0.195 1.195 22 C 0.003 3.997 23 C 0.337 3.663 24 O -0.446 6.446 25 O -0.316 6.316 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.256 0.744 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -6.808 11.565 -25.165 28.520 hybrid contribution 0.802 -1.488 -0.401 1.737 sum -6.005 10.078 -25.566 28.129 Atomic orbital electron populations 1.21848 0.89495 1.03359 1.05328 1.21102 1.00131 1.02073 0.86949 0.83169 1.20844 0.99546 0.94515 0.82259 1.44819 1.61460 1.29309 1.02786 1.16138 0.79413 0.83156 0.81676 1.90894 1.51560 1.24159 1.86151 1.47562 1.57723 1.25391 1.05519 1.22010 0.93140 0.84889 1.01278 1.21954 0.97190 1.03430 0.93966 1.21372 0.99398 0.95604 0.97183 1.19368 0.93344 0.96520 0.92482 0.97088 1.21346 1.35310 1.03616 0.94457 0.92811 1.25573 0.95435 0.99347 0.96414 1.69974 1.40460 1.26202 1.21110 0.86087 0.79214 0.78632 0.79284 1.21284 1.22327 1.19507 1.21890 0.98253 0.98848 0.80744 1.23302 0.75786 0.81511 0.85721 1.90791 1.37747 1.28138 1.87894 1.84455 1.71788 1.58791 1.16525 0.88688 0.92970 0.89358 0.93168 0.92812 0.74404 0.89383 0.87153 0.87068 0.92494 0.92015 0.92644 0.92390 0.93785 0.91721 0.70822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.00 71.98 0.65 -0.63 16 2 C -0.08 -1.06 2.86 -11.54 -0.03 -1.09 16 3 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 4 C 0.15 3.59 4.42 86.38 0.38 3.97 16 5 N -0.72 -16.99 5.19 -478.54 -2.48 -19.48 16 6 C 0.69 25.58 8.30 179.05 1.49 27.06 16 7 O -0.65 -31.70 15.77 -3.98 -0.06 -31.77 16 8 N -0.63 -21.85 2.98 -837.74 -2.49 -24.34 16 9 C 0.11 2.33 6.39 86.36 0.55 2.88 16 10 C -0.13 -2.98 6.08 30.68 0.19 -2.79 16 11 C -0.10 -3.39 5.11 30.62 0.16 -3.23 16 12 C 0.00 0.12 1.83 -11.61 -0.02 0.10 16 13 H 0.01 0.55 7.20 -2.39 -0.02 0.54 16 14 C -0.51 -28.96 9.15 25.60 0.23 -28.72 16 15 H 0.05 3.26 7.99 -2.91 -0.02 3.24 16 16 C 0.03 1.87 5.45 84.66 0.46 2.34 16 17 N -0.94 -59.69 13.96 21.45 0.30 -59.39 16 18 Si 0.94 51.89 24.32 68.60 1.67 53.56 16 19 H -0.29 -16.20 6.92 99.48 0.69 -15.51 16 20 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 21 H -0.27 -15.09 6.53 99.48 0.65 -14.44 16 22 C 0.13 5.69 5.10 86.22 0.44 6.13 16 23 C 0.49 8.03 7.62 71.24 0.54 8.57 16 24 O -0.55 -14.40 16.68 21.97 0.37 -14.04 16 25 O -0.50 -4.60 13.34 -51.45 -0.69 -5.29 16 26 H 0.09 0.51 8.12 -2.38 -0.02 0.49 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.09 0.56 7.18 -2.39 -0.02 0.55 16 29 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.05 1.51 7.96 -2.39 -0.02 1.50 16 31 H 0.41 5.78 5.14 -92.70 -0.48 5.30 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.11 1.35 5.65 -2.39 -0.01 1.34 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 39 H 0.04 2.33 2.31 -2.39 -0.01 2.32 16 40 H 0.06 2.87 8.14 -2.38 -0.02 2.85 16 41 H 0.43 0.81 9.10 -74.06 -0.67 0.14 16 Total: -1.00 -87.65 326.31 1.47 -86.18 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -0.17 Total: -0.01 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 5.03 Total: 14.57 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -4.68 Total: -103.21 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -0.38 Total: -51.09 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 1.67 Total: 53.56 kcal Total: -87.65 1.47 -86.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341432229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.555 kcal (2) G-P(sol) polarization free energy of solvation -87.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds