Wall clock time and date at job start Tue Mar 31 2020 06:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46684 * 179.97438 * 4 3 2 6 6 C 1.36737 * 127.13627 * 269.70746 * 5 4 3 7 7 C 1.50692 * 126.34918 * 359.97362 * 6 5 4 8 8 C 1.52997 * 109.47368 * 89.99640 * 7 6 5 9 9 C 1.50701 * 109.46993 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00444 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99893 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99809 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00005 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47012 * 60.00334 * 13 11 9 15 15 H 1.48501 * 109.47048 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46855 * 300.00201 * 13 11 9 17 17 N 1.30302 * 107.30332 * 179.83615 * 6 5 4 18 18 N 1.28531 * 110.05237 * 0.44509 * 17 6 5 19 19 C 1.31223 * 109.85833 * 359.72170 * 18 17 6 20 20 N 1.38583 * 126.46803 * 180.02562 * 19 18 17 21 21 C 1.46899 * 111.00376 * 339.95405 * 20 19 18 22 22 O 1.46295 * 110.99595 * 215.99599 * 20 19 18 23 23 C 1.42900 * 114.00357 * 239.99919 * 22 20 19 24 24 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 25 25 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 26 26 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 28 28 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 29 29 H 1.09000 * 109.47486 * 300.00062 * 4 3 2 30 30 H 1.09001 * 109.47362 * 60.00784 * 4 3 2 31 31 H 1.09006 * 109.47110 * 209.99425 * 7 6 5 32 32 H 1.09002 * 109.47026 * 329.99390 * 7 6 5 33 33 H 1.09000 * 109.47117 * 299.99604 * 8 7 6 34 34 H 1.09002 * 109.47252 * 59.99888 * 8 7 6 35 35 H 0.96995 * 119.99596 * 179.97438 * 12 11 9 36 36 H 1.09001 * 109.46798 * 60.00017 * 21 20 19 37 37 H 1.09000 * 109.47279 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.46960 * 300.00298 * 21 20 19 39 39 H 1.09002 * 109.46932 * 60.00472 * 23 22 20 40 40 H 1.09003 * 109.47375 * 180.02562 * 23 22 20 41 41 H 1.09004 * 109.47176 * 300.00587 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 6 4.4724 3.2743 -1.0904 7 6 4.3060 2.8788 -2.5349 8 6 2.9317 3.3310 -3.0325 9 6 2.7656 2.9361 -4.4773 10 1 3.5606 2.4143 -4.9893 11 6 1.5982 3.2399 -5.1452 12 7 0.6300 3.8748 -4.5215 13 14 1.3920 2.7497 -6.9359 14 1 1.5033 1.2742 -7.0612 15 1 0.0581 3.1887 -7.4189 16 1 2.4509 3.3970 -7.7514 17 7 4.9655 4.3967 -0.6488 18 7 4.9675 4.4018 0.6365 19 6 4.4664 3.2760 1.0875 20 7 4.3070 2.9196 2.4172 21 6 5.1782 3.7225 3.2856 22 8 4.5493 1.4897 2.6092 23 6 3.4289 0.7758 3.1358 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8465 -0.8900 28 1 1.6885 1.8463 0.8900 29 1 3.8567 0.6439 0.8908 30 1 3.8574 0.6437 -0.8892 31 1 5.0834 3.3537 -3.1335 32 1 4.3874 1.7958 -2.6268 33 1 2.1543 2.8561 -2.4339 34 1 2.8503 4.4141 -2.9406 35 1 -0.1911 4.0889 -4.9915 36 1 4.9290 4.7778 3.1744 37 1 5.0334 3.4221 4.3233 38 1 6.2189 3.5633 3.0034 39 1 2.5846 0.8700 2.4529 40 1 3.6892 -0.2766 3.2491 41 1 3.1584 1.1896 4.1073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341473886.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:42 Heat of formation + Delta-G solvation = 43.006294 kcal Electronic energy + Delta-G solvation = -23623.417075 eV Core-core repulsion = 20156.762937 eV Total energy + Delta-G solvation = -3466.654139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.69063 -38.15237 -37.73482 -35.21834 -34.33162 -33.76639 -31.70180 -29.81160 -28.64230 -26.96147 -26.31207 -25.59975 -25.03520 -23.39151 -21.93189 -20.85632 -19.90829 -17.93713 -16.82712 -16.52909 -16.39670 -16.23550 -15.86889 -15.42676 -15.39157 -14.72910 -14.49690 -14.46191 -13.60258 -13.39971 -13.17691 -12.94704 -12.71499 -12.32928 -12.26488 -12.01855 -11.58255 -11.49132 -11.29041 -11.17727 -10.98039 -10.78184 -10.51620 -10.44026 -10.18356 -9.97191 -9.87858 -9.65581 -9.57754 -9.24738 -8.42286 -8.07533 -6.07847 -4.11682 1.46408 2.29778 2.66334 3.29660 3.29989 3.34752 3.37327 3.78012 4.38811 4.40958 4.72049 4.89579 4.97072 5.10898 5.17670 5.18330 5.24022 5.27992 5.29043 5.33286 5.39575 5.41938 5.45805 5.50211 5.59237 5.70273 5.74294 5.82643 6.10809 6.30694 6.40393 6.55739 6.57619 6.78816 7.02732 7.25728 7.52523 7.64913 7.89160 8.26589 8.93603 9.06339 9.52888 11.03185 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.005151 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.636164 B = 5435.046660 C = 6582.440166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.042 3.958 4 C 0.105 3.895 5 N -0.468 5.468 6 C 0.220 3.780 7 C -0.034 4.034 8 C 0.032 3.968 9 C -0.524 4.524 10 H 0.059 0.941 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.275 1.275 17 N -0.288 5.288 18 N -0.300 5.300 19 C 0.320 3.680 20 N -0.274 5.274 21 C 0.029 3.971 22 O -0.255 6.255 23 C 0.025 3.975 24 H 0.039 0.961 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.015 0.985 34 H 0.026 0.974 35 H 0.262 0.738 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.879 -8.133 15.601 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C -0.035 4.035 4 C -0.018 4.018 5 N -0.165 5.165 6 C -0.047 4.047 7 C -0.074 4.074 8 C -0.006 4.006 9 C -0.562 4.562 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.531 5.531 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.201 1.201 17 N -0.127 5.127 18 N -0.148 5.148 19 C -0.036 4.036 20 N -0.043 5.043 21 C -0.119 4.119 22 O -0.253 6.253 23 C -0.072 4.072 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.109 -6.964 15.762 17.510 hybrid contribution -0.632 -1.387 -0.966 1.804 sum 2.477 -8.351 14.796 17.170 Atomic orbital electron populations 1.22772 0.80122 1.02726 1.00689 1.87729 1.20453 1.26775 1.95648 1.22887 0.92487 0.85641 1.02497 1.21803 0.92704 0.80657 1.06657 1.46054 1.48407 1.16335 1.05707 1.25691 0.97968 0.88556 0.92532 1.20515 1.03638 1.00869 0.82361 1.19123 0.88015 0.97554 0.95951 1.21088 1.01314 1.37867 0.95918 0.92299 1.24993 0.95878 0.94957 0.98290 1.69957 1.06100 1.40205 1.36878 0.86618 0.77322 0.78911 0.84951 1.20190 1.21289 1.20051 1.74062 1.19841 1.17378 1.01462 1.74543 1.19112 1.16927 1.04224 1.22824 1.02844 0.91693 0.86274 1.64433 1.48608 0.91565 0.99698 1.22698 0.95576 0.97762 0.95828 1.90829 1.36312 1.11710 1.86486 1.22932 0.90242 0.95369 0.98625 0.94206 0.93057 0.89445 0.90478 0.92912 0.87039 0.87609 0.88965 0.91026 0.96678 0.95530 0.92823 0.87558 0.89624 0.92856 0.92575 0.88247 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.39 -5.50 10.70 -35.23 -0.38 -5.88 16 3 C 0.04 0.65 5.46 37.16 0.20 0.85 16 4 C 0.11 1.56 5.89 -4.04 -0.02 1.54 16 5 N -0.47 -8.27 2.81 -114.08 -0.32 -8.59 16 6 C 0.22 4.42 7.32 -154.02 -1.13 3.29 16 7 C -0.03 -0.69 5.52 -27.89 -0.15 -0.85 16 8 C 0.03 0.79 4.96 -27.88 -0.14 0.65 16 9 C -0.52 -14.13 9.11 -34.44 -0.31 -14.45 16 10 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 13 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 17 N -0.29 -6.25 12.18 32.99 0.40 -5.84 16 18 N -0.30 -5.97 11.35 30.32 0.34 -5.62 16 19 C 0.32 5.64 7.78 -318.87 -2.48 3.16 16 20 N -0.27 -3.89 5.14 -68.05 -0.35 -4.24 16 21 C 0.03 0.32 9.65 60.06 0.58 0.90 16 22 O -0.25 -3.25 8.96 -13.92 -0.12 -3.38 16 23 C 0.03 0.24 10.25 101.05 1.04 1.27 16 24 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.42 6.27 -51.93 -0.33 1.09 16 28 H 0.05 0.78 7.25 -51.93 -0.38 0.40 16 29 H 0.11 1.48 4.28 -51.93 -0.22 1.26 16 30 H 0.11 1.53 7.24 -51.93 -0.38 1.15 16 31 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 32 H 0.07 1.32 7.26 -51.93 -0.38 0.94 16 33 H 0.02 0.39 6.27 -51.93 -0.33 0.07 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.11 1.20 7.92 -51.93 -0.41 0.79 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.58 5.59 -51.93 -0.29 0.29 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 339.09 15.07 5.11 5.11 Total: -1.00 -32.29 339.09 -7.06 -39.35 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.05 Total: -1.04 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -1.41 Total: -0.54 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.81 Total: -49.63 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.50 Total: -9.25 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.29 -7.06 -39.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341473886.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.352 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds