Wall clock time and date at job start Tue Mar 31 2020 06:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46684 * 179.97438 * 4 3 2 6 6 C 1.36737 * 127.13627 * 269.70746 * 5 4 3 7 7 C 1.50692 * 126.34918 * 359.97362 * 6 5 4 8 8 C 1.52997 * 109.47368 * 89.99640 * 7 6 5 9 9 C 1.50701 * 109.46993 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00444 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99893 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99809 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00005 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47012 * 60.00334 * 13 11 9 15 15 H 1.48501 * 109.47048 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46855 * 300.00201 * 13 11 9 17 17 N 1.30302 * 107.30332 * 179.83615 * 6 5 4 18 18 N 1.28531 * 110.05237 * 0.44509 * 17 6 5 19 19 C 1.31223 * 109.85833 * 359.72170 * 18 17 6 20 20 N 1.38583 * 126.46803 * 180.02562 * 19 18 17 21 21 C 1.46899 * 111.00376 * 339.95405 * 20 19 18 22 22 O 1.46295 * 110.99595 * 215.99599 * 20 19 18 23 23 C 1.42900 * 114.00357 * 239.99919 * 22 20 19 24 24 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 25 25 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 26 26 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 28 28 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 29 29 H 1.09000 * 109.47486 * 300.00062 * 4 3 2 30 30 H 1.09001 * 109.47362 * 60.00784 * 4 3 2 31 31 H 1.09006 * 109.47110 * 209.99425 * 7 6 5 32 32 H 1.09002 * 109.47026 * 329.99390 * 7 6 5 33 33 H 1.09000 * 109.47117 * 299.99604 * 8 7 6 34 34 H 1.09002 * 109.47252 * 59.99888 * 8 7 6 35 35 H 0.96995 * 119.99596 * 179.97438 * 12 11 9 36 36 H 1.09001 * 109.46798 * 60.00017 * 21 20 19 37 37 H 1.09000 * 109.47279 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.46960 * 300.00298 * 21 20 19 39 39 H 1.09002 * 109.46932 * 60.00472 * 23 22 20 40 40 H 1.09003 * 109.47375 * 180.02562 * 23 22 20 41 41 H 1.09004 * 109.47176 * 300.00587 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 6 4.4724 3.2743 -1.0904 7 6 4.3060 2.8788 -2.5349 8 6 2.9317 3.3310 -3.0325 9 6 2.7656 2.9361 -4.4773 10 1 3.5606 2.4143 -4.9893 11 6 1.5982 3.2399 -5.1452 12 7 0.6300 3.8748 -4.5215 13 14 1.3920 2.7497 -6.9359 14 1 1.5033 1.2742 -7.0612 15 1 0.0581 3.1887 -7.4189 16 1 2.4509 3.3970 -7.7514 17 7 4.9655 4.3967 -0.6488 18 7 4.9675 4.4018 0.6365 19 6 4.4664 3.2760 1.0875 20 7 4.3070 2.9196 2.4172 21 6 5.1782 3.7225 3.2856 22 8 4.5493 1.4897 2.6092 23 6 3.4289 0.7758 3.1358 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8465 -0.8900 28 1 1.6885 1.8463 0.8900 29 1 3.8567 0.6439 0.8908 30 1 3.8574 0.6437 -0.8892 31 1 5.0834 3.3537 -3.1335 32 1 4.3874 1.7958 -2.6268 33 1 2.1543 2.8561 -2.4339 34 1 2.8503 4.4141 -2.9406 35 1 -0.1911 4.0889 -4.9915 36 1 4.9290 4.7778 3.1744 37 1 5.0334 3.4221 4.3233 38 1 6.2189 3.5633 3.0034 39 1 2.5846 0.8700 2.4529 40 1 3.6892 -0.2766 3.2491 41 1 3.1584 1.1896 4.1073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341473886.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:41 Heat of formation + Delta-G solvation = 23.703347 kcal Electronic energy + Delta-G solvation = -23624.254114 eV Core-core repulsion = 20156.762937 eV Total energy + Delta-G solvation = -3467.491177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.14133 -39.28615 -38.81145 -36.66216 -35.79181 -35.24624 -33.54513 -31.08100 -30.23878 -27.82847 -27.46224 -27.16174 -26.30974 -24.66033 -23.79993 -22.15185 -21.46845 -19.15881 -18.57115 -17.91684 -17.73032 -17.40556 -17.06439 -16.68580 -16.52920 -16.38815 -15.82621 -15.51541 -15.18333 -14.86633 -14.42258 -14.24941 -14.01409 -13.57736 -13.46008 -13.32234 -12.99460 -12.80748 -12.78826 -12.63465 -12.53404 -12.38021 -12.01015 -11.91693 -11.57594 -11.45048 -11.40247 -11.30604 -11.06030 -10.80529 -10.53270 -9.48779 -8.19675 -6.31357 0.24580 0.95443 1.34064 1.43746 1.46603 1.53971 1.88006 2.42303 2.63504 3.14673 3.26036 3.40649 3.52955 3.76805 3.88461 3.97996 4.08308 4.25117 4.37245 4.41415 4.44074 4.49288 4.50563 4.51999 4.56823 4.63568 4.71108 4.78544 4.80868 4.85516 4.86975 4.91760 5.28914 5.45733 5.54559 5.58852 5.78696 5.86913 5.96573 6.16592 6.83323 7.38220 7.57406 8.92049 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.005151 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.636164 B = 5435.046660 C = 6582.440166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.390 6.390 3 C 0.056 3.944 4 C 0.105 3.895 5 N -0.467 5.467 6 C 0.205 3.795 7 C -0.019 4.019 8 C 0.042 3.958 9 C -0.539 4.539 10 H 0.071 0.929 11 C 0.005 3.995 12 N -0.933 5.933 13 Si 0.965 3.035 14 H -0.263 1.263 15 H -0.287 1.287 16 H -0.268 1.268 17 N -0.319 5.319 18 N -0.328 5.328 19 C 0.335 3.665 20 N -0.279 5.279 21 C 0.028 3.972 22 O -0.256 6.256 23 C 0.017 3.983 24 H 0.056 0.944 25 H 0.030 0.970 26 H 0.116 0.884 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.094 0.906 33 H -0.001 1.001 34 H -0.015 1.015 35 H 0.263 0.737 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.129 0.871 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 -10.358 16.536 19.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.308 6.308 3 C -0.022 4.022 4 C -0.017 4.017 5 N -0.164 5.164 6 C -0.063 4.063 7 C -0.059 4.059 8 C 0.004 3.996 9 C -0.577 4.577 10 H 0.090 0.910 11 C -0.194 4.194 12 N -0.573 5.573 13 Si 0.789 3.211 14 H -0.187 1.187 15 H -0.213 1.213 16 H -0.193 1.193 17 N -0.158 5.158 18 N -0.176 5.176 19 C -0.022 4.022 20 N -0.047 5.047 21 C -0.118 4.118 22 O -0.256 6.256 23 C -0.079 4.079 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.134 0.866 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.017 0.983 34 H 0.003 0.997 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.147 0.853 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.421 -9.193 16.711 19.377 hybrid contribution -0.807 -0.764 -1.070 1.542 sum 2.614 -9.957 15.641 18.725 Atomic orbital electron populations 1.22980 0.78846 1.04551 1.00485 1.87721 1.21800 1.25744 1.95575 1.22624 0.92856 0.85986 1.00770 1.21998 0.92232 0.79493 1.07984 1.46137 1.48178 1.16996 1.05092 1.25444 0.99088 0.88947 0.92862 1.20229 1.00702 1.02075 0.82847 1.18892 0.90428 0.94702 0.95564 1.21538 1.01680 1.37610 0.96850 0.91050 1.25934 0.95555 0.94829 1.03043 1.70107 1.06711 1.41583 1.38852 0.85500 0.77230 0.79184 0.79154 1.18729 1.21261 1.19253 1.73962 1.20846 1.18329 1.02642 1.74442 1.21112 1.18464 1.03556 1.23246 1.00521 0.90844 0.87593 1.64423 1.49272 0.93307 0.97702 1.22833 0.94745 0.97290 0.96950 1.90846 1.37651 1.10257 1.86816 1.23232 0.89135 0.96539 0.99015 0.92559 0.95146 0.86615 0.94401 0.92426 0.84820 0.87105 0.88724 0.88775 0.98295 0.99664 0.92835 0.87984 0.86141 0.93350 0.93546 0.85349 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.39 -10.57 10.70 -148.98 -1.59 -12.17 16 3 C 0.06 1.68 5.46 71.98 0.39 2.07 16 4 C 0.10 3.01 5.89 86.38 0.51 3.52 16 5 N -0.47 -16.44 2.81 -514.84 -1.45 -17.88 16 6 C 0.21 8.42 7.32 137.64 1.01 9.43 16 7 C -0.02 -0.78 5.52 29.84 0.16 -0.62 16 8 C 0.04 2.20 4.96 29.85 0.15 2.35 16 9 C -0.54 -29.44 9.11 25.60 0.23 -29.20 16 10 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 11 C 0.00 0.26 5.46 84.66 0.46 0.72 16 12 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 13 Si 0.96 43.08 29.54 68.60 2.03 45.10 16 14 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 15 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 N -0.32 -14.21 12.18 -49.54 -0.60 -14.82 16 18 N -0.33 -13.25 11.35 -58.00 -0.66 -13.91 16 19 C 0.33 11.66 7.78 260.11 2.02 13.68 16 20 N -0.28 -7.42 5.14 -369.22 -1.90 -9.32 16 21 C 0.03 0.58 9.65 127.69 1.23 1.82 16 22 O -0.26 -5.80 8.96 -50.15 -0.45 -6.25 16 23 C 0.02 0.26 10.25 113.37 1.16 1.42 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.04 1.46 6.27 -2.39 -0.01 1.44 16 28 H 0.06 1.67 7.25 -2.39 -0.02 1.65 16 29 H 0.13 3.23 4.28 -2.39 -0.01 3.22 16 30 H 0.11 3.07 7.24 -2.39 -0.02 3.06 16 31 H 0.09 3.84 8.14 -2.38 -0.02 3.82 16 32 H 0.09 3.42 7.26 -2.39 -0.02 3.41 16 33 H 0.00 -0.06 6.27 -2.39 -0.01 -0.08 16 34 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 35 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 36 H 0.10 2.21 7.92 -2.39 -0.02 2.19 16 37 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.05 0.83 5.59 -2.39 -0.01 0.82 16 40 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -71.42 339.09 5.28 -66.15 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.03 Total: 11.68 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 8.58 Total: 7.05 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -4.32 Total: -111.57 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -2.04 Total: -18.41 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -71.42 5.28 -66.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341473886.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.849 kcal (2) G-P(sol) polarization free energy of solvation -71.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds