Wall clock time and date at job start Tue Mar 31 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00044 * 2 1 4 4 H 1.09002 * 110.63656 * 328.30164 * 3 2 1 5 5 C 1.55160 * 110.87061 * 205.05990 * 3 2 1 6 6 C 1.54910 * 101.58122 * 206.05940 * 5 3 2 7 7 N 1.47425 * 104.83231 * 37.00939 * 6 5 3 8 8 C 1.34771 * 125.64767 * 156.13676 * 7 6 5 9 9 O 1.21345 * 120.00063 * 179.69186 * 8 7 6 10 10 C 1.49452 * 120.00064 * 359.68936 * 8 7 6 11 11 O 1.21345 * 119.99873 * 0.02562 * 10 8 7 12 12 N 1.34780 * 119.99821 * 179.97438 * 10 8 7 13 13 C 1.46501 * 119.99799 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47216 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47300 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47144 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00001 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99858 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00150 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00292 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47181 * 89.99245 * 20 18 16 22 22 H 1.48504 * 109.47086 * 209.99814 * 20 18 16 23 23 H 1.48507 * 109.46927 * 329.99552 * 20 18 16 24 24 C 1.47026 * 108.70074 * 335.87083 * 7 6 5 25 25 H 1.08998 * 109.47445 * 300.01029 * 1 2 3 26 26 H 1.09003 * 109.47018 * 60.01006 * 1 2 3 27 27 H 1.08997 * 109.47468 * 180.02562 * 1 2 3 28 28 H 1.08991 * 111.00600 * 324.13557 * 5 3 2 29 29 H 1.09002 * 111.00329 * 87.98770 * 5 3 2 30 30 H 1.09001 * 110.36852 * 278.17238 * 6 5 3 31 31 H 1.08998 * 110.36449 * 155.84885 * 6 5 3 32 32 H 0.96991 * 120.00169 * 0.02562 * 12 10 8 33 33 H 1.09000 * 109.47266 * 300.00110 * 13 12 10 34 34 H 1.09002 * 109.46987 * 59.99789 * 13 12 10 35 35 H 1.09000 * 109.46947 * 300.00128 * 14 13 12 36 36 H 1.09002 * 109.47460 * 59.99901 * 14 13 12 37 37 H 1.09005 * 109.46495 * 299.99668 * 15 14 13 38 38 H 1.08997 * 109.47068 * 60.00020 * 15 14 13 39 39 H 0.96995 * 120.00704 * 180.02562 * 19 18 16 40 40 H 1.09004 * 109.87531 * 120.47707 * 24 7 6 41 41 H 1.08996 * 109.88343 * 241.48426 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3736 2.0094 -0.5360 5 6 3.4348 1.2762 -0.6141 6 6 4.0945 2.4982 0.0725 7 7 3.5540 2.4978 1.4441 8 6 4.1409 3.0588 2.5197 9 8 3.6002 3.0022 3.6046 10 6 5.4579 3.7508 2.3765 11 8 5.9985 3.8078 1.2916 12 7 6.0445 4.3123 3.4522 13 6 7.3352 4.9911 3.3117 14 6 7.7762 5.5349 4.6720 15 6 9.1238 6.2443 4.5252 16 6 9.5578 6.7805 5.8650 17 1 8.9346 6.6307 6.7343 18 6 10.7505 7.4624 5.9811 19 7 11.1291 7.9308 7.1503 20 14 11.8282 7.7222 4.4776 21 1 11.4512 8.9951 3.8124 22 1 13.2523 7.7840 4.8940 23 1 11.6377 6.5937 3.5312 24 6 2.2656 1.7895 1.4428 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 3.9539 0.3541 -0.3531 29 1 3.3970 1.4089 -1.6953 30 1 3.8189 3.4179 -0.4436 31 1 5.1782 2.3832 0.0917 32 1 5.6123 4.2670 4.3193 33 1 8.0794 4.2842 2.9448 34 1 7.2373 5.8151 2.6049 35 1 7.0320 6.2416 5.0393 36 1 7.8742 4.7106 5.3785 37 1 9.8681 5.5378 4.1578 38 1 9.0254 7.0687 3.8190 39 1 11.9680 8.4108 7.2320 40 1 2.3119 0.9349 2.1179 41 1 1.4704 2.4661 1.7556 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341848179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:44 Heat of formation + Delta-G solvation = -114.678726 kcal Electronic energy + Delta-G solvation = -21865.659454 eV Core-core repulsion = 18359.874828 eV Total energy + Delta-G solvation = -3505.784625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94378 -39.39754 -38.27409 -36.84190 -35.65268 -33.36769 -31.57380 -31.46401 -29.32643 -27.74444 -27.09235 -25.09918 -23.31326 -22.08964 -21.45484 -20.72264 -19.69677 -17.99904 -17.68912 -16.96304 -16.75924 -16.24129 -15.85763 -15.66657 -15.29600 -15.05958 -14.66364 -14.29031 -14.03974 -13.79435 -13.38573 -13.32497 -12.87371 -12.73444 -12.46827 -12.25263 -12.09796 -11.98598 -11.88955 -11.53123 -11.12769 -11.08236 -10.92685 -10.25733 -10.16158 -9.97133 -9.78480 -9.47153 -9.24750 -9.17568 -9.01371 -8.56893 -6.07141 -4.06211 1.34624 2.08441 3.09878 3.17652 3.29865 3.37555 3.40894 3.45643 3.98508 4.10004 4.38222 4.42907 4.47840 4.76239 4.84102 4.88483 4.92234 5.19305 5.20752 5.26419 5.30719 5.41853 5.42461 5.49585 5.55462 5.64858 5.78655 5.91703 6.16162 6.37758 6.53598 6.62089 6.72887 6.86647 7.18263 7.21524 7.32498 7.61246 7.74031 7.96543 8.49177 8.96935 9.54535 11.06049 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.050092 B = 0.002476 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.836254 B =11304.271579 C =11774.027049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.076 3.924 4 H 0.082 0.918 5 C -0.131 4.131 6 C 0.098 3.902 7 N -0.592 5.592 8 C 0.522 3.478 9 O -0.519 6.519 10 C 0.506 3.494 11 O -0.523 6.523 12 N -0.691 5.691 13 C 0.112 3.888 14 C -0.116 4.116 15 C -0.010 4.010 16 C -0.523 4.523 17 H 0.073 0.927 18 C 0.066 3.934 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.084 3.916 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.263 0.737 40 H 0.083 0.917 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.768 -14.334 -17.540 30.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.292 6.292 3 C 0.017 3.983 4 H 0.100 0.900 5 C -0.169 4.169 6 C -0.024 4.024 7 N -0.328 5.328 8 C 0.305 3.695 9 O -0.394 6.394 10 C 0.286 3.714 11 O -0.400 6.400 12 N -0.342 5.342 13 C -0.010 4.010 14 C -0.154 4.154 15 C -0.048 4.048 16 C -0.561 4.561 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.541 5.541 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.039 4.039 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.249 0.751 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.363 -14.347 -17.553 30.473 hybrid contribution 0.151 0.465 -0.209 0.532 sum -20.211 -13.883 -17.762 30.278 Atomic orbital electron populations 1.22868 0.80585 1.03194 1.00296 1.87966 1.20100 1.26374 1.94722 1.23160 0.95631 0.85398 0.94120 0.89965 1.22974 0.93676 0.99451 1.00803 1.22708 1.01642 0.97889 0.80203 1.48070 1.21487 1.54116 1.09090 1.20025 0.86227 0.79889 0.83341 1.90774 1.64783 1.58415 1.25472 1.19852 0.85687 0.80614 0.85268 1.90700 1.64880 1.58517 1.25879 1.46016 1.22812 1.54087 1.11326 1.21851 0.82166 0.96445 1.00519 1.21747 1.00029 1.00271 0.93311 1.19503 0.91794 0.95362 0.98154 1.21088 1.05767 1.35202 0.94022 0.90936 1.25037 0.97598 0.95045 0.95854 1.69909 1.22880 1.37774 1.23516 0.86767 0.79749 0.79130 0.83584 1.20253 1.21363 1.18911 1.22527 0.85383 0.97455 0.98573 0.93702 0.93694 0.89278 0.89235 0.88854 0.90480 0.87212 0.75133 0.91069 0.91078 0.91814 0.91770 0.96231 0.96677 0.92675 0.89843 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.88 101.05 1.10 1.23 16 2 O -0.37 -2.91 10.44 -35.23 -0.37 -3.27 16 3 C 0.08 0.52 3.40 -24.90 -0.08 0.44 16 4 H 0.08 0.43 7.88 -51.93 -0.41 0.02 16 5 C -0.13 -0.88 6.82 -24.58 -0.17 -1.05 16 6 C 0.10 0.87 6.06 -2.53 -0.02 0.85 16 7 N -0.59 -6.55 3.33 -171.03 -0.57 -7.12 16 8 C 0.52 7.14 7.91 -11.59 -0.09 7.05 16 9 O -0.52 -8.12 16.80 5.50 0.09 -8.03 16 10 C 0.51 7.32 7.86 -11.58 -0.09 7.23 16 11 O -0.52 -8.15 13.78 5.50 0.08 -8.07 16 12 N -0.69 -9.95 5.55 -60.73 -0.34 -10.29 16 13 C 0.11 1.78 5.67 -4.04 -0.02 1.76 16 14 C -0.12 -2.13 5.27 -26.73 -0.14 -2.27 16 15 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 16 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 17 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 20 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 24 C 0.08 0.75 6.64 -3.07 -0.02 0.73 16 25 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.04 0.16 8.11 -51.93 -0.42 -0.26 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.11 1.14 6.16 -51.93 -0.32 0.82 16 32 H 0.41 5.53 7.94 -40.82 -0.32 5.21 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 38 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.08 0.83 8.06 -51.93 -0.42 0.42 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 342.38 15.07 5.16 5.16 Total: -1.00 -32.99 342.38 -6.39 -39.38 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.47 Total: -0.16 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.08 Total: 2.45 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.13 Total: -44.30 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.20 Total: -19.38 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.99 -6.39 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341848179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.301 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds