Wall clock time and date at job start Tue Mar 31 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00044 * 2 1 4 4 H 1.09002 * 110.63656 * 328.30164 * 3 2 1 5 5 C 1.55160 * 110.87061 * 205.05990 * 3 2 1 6 6 C 1.54910 * 101.58122 * 206.05940 * 5 3 2 7 7 N 1.47425 * 104.83231 * 37.00939 * 6 5 3 8 8 C 1.34771 * 125.64767 * 156.13676 * 7 6 5 9 9 O 1.21345 * 120.00063 * 179.69186 * 8 7 6 10 10 C 1.49452 * 120.00064 * 359.68936 * 8 7 6 11 11 O 1.21345 * 119.99873 * 0.02562 * 10 8 7 12 12 N 1.34780 * 119.99821 * 179.97438 * 10 8 7 13 13 C 1.46501 * 119.99799 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47216 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47300 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47144 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00001 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99858 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00150 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00292 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47181 * 89.99245 * 20 18 16 22 22 H 1.48504 * 109.47086 * 209.99814 * 20 18 16 23 23 H 1.48507 * 109.46927 * 329.99552 * 20 18 16 24 24 C 1.47026 * 108.70074 * 335.87083 * 7 6 5 25 25 H 1.08998 * 109.47445 * 300.01029 * 1 2 3 26 26 H 1.09003 * 109.47018 * 60.01006 * 1 2 3 27 27 H 1.08997 * 109.47468 * 180.02562 * 1 2 3 28 28 H 1.08991 * 111.00600 * 324.13557 * 5 3 2 29 29 H 1.09002 * 111.00329 * 87.98770 * 5 3 2 30 30 H 1.09001 * 110.36852 * 278.17238 * 6 5 3 31 31 H 1.08998 * 110.36449 * 155.84885 * 6 5 3 32 32 H 0.96991 * 120.00169 * 0.02562 * 12 10 8 33 33 H 1.09000 * 109.47266 * 300.00110 * 13 12 10 34 34 H 1.09002 * 109.46987 * 59.99789 * 13 12 10 35 35 H 1.09000 * 109.46947 * 300.00128 * 14 13 12 36 36 H 1.09002 * 109.47460 * 59.99901 * 14 13 12 37 37 H 1.09005 * 109.46495 * 299.99668 * 15 14 13 38 38 H 1.08997 * 109.47068 * 60.00020 * 15 14 13 39 39 H 0.96995 * 120.00704 * 180.02562 * 19 18 16 40 40 H 1.09004 * 109.87531 * 120.47707 * 24 7 6 41 41 H 1.08996 * 109.88343 * 241.48426 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3736 2.0094 -0.5360 5 6 3.4348 1.2762 -0.6141 6 6 4.0945 2.4982 0.0725 7 7 3.5540 2.4978 1.4441 8 6 4.1409 3.0588 2.5197 9 8 3.6002 3.0022 3.6046 10 6 5.4579 3.7508 2.3765 11 8 5.9985 3.8078 1.2916 12 7 6.0445 4.3123 3.4522 13 6 7.3352 4.9911 3.3117 14 6 7.7762 5.5349 4.6720 15 6 9.1238 6.2443 4.5252 16 6 9.5578 6.7805 5.8650 17 1 8.9346 6.6307 6.7343 18 6 10.7505 7.4624 5.9811 19 7 11.1291 7.9308 7.1503 20 14 11.8282 7.7222 4.4776 21 1 11.4512 8.9951 3.8124 22 1 13.2523 7.7840 4.8940 23 1 11.6377 6.5937 3.5312 24 6 2.2656 1.7895 1.4428 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 3.9539 0.3541 -0.3531 29 1 3.3970 1.4089 -1.6953 30 1 3.8189 3.4179 -0.4436 31 1 5.1782 2.3832 0.0917 32 1 5.6123 4.2670 4.3193 33 1 8.0794 4.2842 2.9448 34 1 7.2373 5.8151 2.6049 35 1 7.0320 6.2416 5.0393 36 1 7.8742 4.7106 5.3785 37 1 9.8681 5.5378 4.1578 38 1 9.0254 7.0687 3.8190 39 1 11.9680 8.4108 7.2320 40 1 2.3119 0.9349 2.1179 41 1 1.4704 2.4661 1.7556 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341848179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:44 Heat of formation + Delta-G solvation = -139.345080 kcal Electronic energy + Delta-G solvation = -21866.729067 eV Core-core repulsion = 18359.874828 eV Total energy + Delta-G solvation = -3506.854239 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94639 -40.24477 -39.22827 -37.64916 -36.97241 -35.18473 -33.31991 -32.29143 -30.04287 -29.30628 -27.66260 -26.22920 -24.59376 -23.13979 -22.32904 -22.11288 -20.86715 -19.14407 -18.72159 -18.37973 -17.96508 -17.22088 -16.85300 -16.50028 -16.27268 -16.22637 -15.75937 -15.50075 -15.26608 -14.81546 -14.77375 -14.31042 -14.11743 -13.81503 -13.61838 -13.52052 -13.14153 -12.87540 -12.75290 -12.70426 -12.52589 -12.25248 -11.90262 -11.78265 -11.66072 -11.60076 -11.33554 -10.82523 -10.75344 -10.56575 -10.32399 -9.95479 -8.28212 -6.32855 0.24703 1.10170 1.38791 1.40514 1.52337 2.03062 2.31963 2.37786 2.80512 3.07382 3.19417 3.47080 3.49009 3.97741 4.01214 4.17175 4.21396 4.26327 4.44435 4.47424 4.54809 4.59679 4.65606 4.73993 4.81637 4.86267 4.88617 4.91116 5.01218 5.03662 5.08808 5.21412 5.46207 5.55312 5.65184 5.89022 6.13100 6.17749 6.28085 6.55006 6.75508 6.84213 7.31803 8.88341 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.050092 B = 0.002476 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.836254 B =11304.271579 C =11774.027049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.393 6.393 3 C 0.083 3.917 4 H 0.107 0.893 5 C -0.123 4.123 6 C 0.094 3.906 7 N -0.587 5.587 8 C 0.520 3.480 9 O -0.547 6.547 10 C 0.508 3.492 11 O -0.533 6.533 12 N -0.689 5.689 13 C 0.126 3.874 14 C -0.105 4.105 15 C -0.010 4.010 16 C -0.533 4.533 17 H 0.033 0.967 18 C 0.001 3.999 19 N -0.952 5.952 20 Si 0.952 3.048 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.243 1.243 24 C 0.079 3.921 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.417 0.583 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.025 0.975 39 H 0.266 0.734 40 H 0.070 0.930 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.602 -14.943 -20.611 33.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.312 6.312 3 C 0.024 3.976 4 H 0.125 0.875 5 C -0.161 4.161 6 C -0.027 4.027 7 N -0.322 5.322 8 C 0.303 3.697 9 O -0.425 6.425 10 C 0.288 3.712 11 O -0.411 6.411 12 N -0.341 5.341 13 C 0.003 3.997 14 C -0.143 4.143 15 C -0.048 4.048 16 C -0.571 4.571 17 H 0.052 0.948 18 C -0.196 4.196 19 N -0.593 5.593 20 Si 0.775 3.225 21 H -0.191 1.191 22 H -0.212 1.212 23 H -0.166 1.166 24 C -0.044 4.044 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.254 0.746 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.233 -14.985 -20.661 33.200 hybrid contribution 0.319 0.606 0.799 1.052 sum -20.913 -14.380 -19.862 32.228 Atomic orbital electron populations 1.23052 0.79180 1.04114 1.01208 1.87944 1.21735 1.26786 1.94697 1.23183 0.96149 0.85724 0.92531 0.87491 1.22956 0.93159 0.97839 1.02098 1.22848 1.00976 0.99658 0.79232 1.48213 1.21958 1.52680 1.09315 1.19839 0.85956 0.80253 0.83683 1.90760 1.65355 1.59872 1.26529 1.19988 0.85932 0.80326 0.84918 1.90697 1.65272 1.58908 1.26197 1.45900 1.22399 1.54045 1.11773 1.21557 0.82865 0.96672 0.98575 1.21528 0.97878 0.99907 0.95015 1.19457 0.94109 0.95969 0.95285 1.21478 1.05334 1.35033 0.95264 0.94829 1.26058 0.99411 0.94833 0.99285 1.70070 1.23743 1.39229 1.26229 0.85634 0.77281 0.80026 0.79571 1.19147 1.21244 1.16619 1.22715 0.84475 0.96945 1.00227 0.93421 0.92111 0.88500 0.90164 0.86185 0.89119 0.88696 0.74606 0.90818 0.90640 0.91880 0.91956 0.95598 0.95668 0.92539 0.91195 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.88 113.37 1.23 1.39 16 2 O -0.39 -5.32 10.44 -148.98 -1.56 -6.87 16 3 C 0.08 0.94 3.40 31.78 0.11 1.05 16 4 H 0.11 0.72 7.88 -2.39 -0.02 0.70 16 5 C -0.12 -1.36 6.82 31.99 0.22 -1.14 16 6 C 0.09 1.50 6.06 86.86 0.53 2.03 16 7 N -0.59 -12.32 3.33 -813.38 -2.71 -15.03 16 8 C 0.52 13.89 7.91 87.27 0.69 14.58 16 9 O -0.55 -17.05 16.80 -3.23 -0.05 -17.10 16 10 C 0.51 14.19 7.86 87.27 0.69 14.87 16 11 O -0.53 -15.86 13.78 -3.23 -0.04 -15.90 16 12 N -0.69 -19.14 5.55 -464.41 -2.58 -21.71 16 13 C 0.13 3.79 5.67 86.38 0.49 4.28 16 14 C -0.11 -3.80 5.27 30.59 0.16 -3.63 16 15 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 16 C -0.53 -30.31 9.66 25.60 0.25 -30.06 16 17 H 0.03 2.10 7.99 -2.91 -0.02 2.07 16 18 C 0.00 0.04 5.47 84.65 0.46 0.51 16 19 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 20 Si 0.95 43.78 27.47 68.60 1.88 45.67 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 24 C 0.08 1.32 6.64 86.73 0.58 1.90 16 25 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.06 0.27 8.11 -2.39 -0.02 0.25 16 27 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.85 6.16 -2.39 -0.01 1.83 16 32 H 0.42 10.94 7.94 -92.71 -0.74 10.21 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.03 1.13 7.20 -2.38 -0.02 1.11 16 38 H 0.02 1.08 7.57 -2.39 -0.02 1.06 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.07 1.37 8.06 -2.38 -0.02 1.35 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -71.63 342.38 1.00 -70.63 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.23 Total: 14.35 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 5.52 Total: 5.43 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -4.98 Total: -96.20 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.65 Total: -39.88 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.67 kcal Total: -71.63 1.00 -70.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341848179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.714 kcal (2) G-P(sol) polarization free energy of solvation -71.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds