Wall clock time and date at job start Tue Mar 31 2020 05:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00158 * 2 1 4 4 H 1.48499 * 109.47430 * 269.99554 * 3 2 1 5 5 H 1.48499 * 109.47239 * 29.99462 * 3 2 1 6 6 H 1.48506 * 109.47432 * 149.99506 * 3 2 1 7 7 C 1.37879 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00154 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00164 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46986 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99789 * 180.27475 * 10 9 7 12 12 O 1.21586 * 120.00241 * 354.80338 * 11 10 9 13 13 N 1.34775 * 119.99624 * 174.79922 * 11 10 9 14 14 C 1.46918 * 120.63657 * 4.94333 * 13 11 10 15 15 C 1.53617 * 108.54834 * 126.36594 * 14 13 11 16 16 C 1.53039 * 109.24327 * 54.85488 * 15 14 13 17 17 C 1.53035 * 109.54076 * 298.51557 * 16 15 14 18 18 H 1.09007 * 109.49490 * 301.41468 * 17 16 15 19 19 C 1.53000 * 109.52753 * 181.33178 * 17 16 15 20 20 C 1.52993 * 109.47219 * 175.14293 * 19 17 16 21 21 C 1.50704 * 109.47276 * 179.97438 * 20 19 17 22 22 O 1.20826 * 119.99482 * 0.02562 * 21 20 19 23 23 O 1.34221 * 120.00094 * 179.97438 * 21 20 19 24 24 C 1.46933 * 120.62967 * 185.21607 * 13 11 10 25 25 H 0.96998 * 119.99836 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46955 * 60.00206 * 9 7 2 27 27 H 1.09003 * 109.47323 * 299.99854 * 9 7 2 28 28 H 0.97004 * 120.00180 * 0.02562 * 10 9 7 29 29 H 1.09003 * 109.58717 * 246.20331 * 14 13 11 30 30 H 1.09007 * 109.58382 * 6.61854 * 14 13 11 31 31 H 1.09008 * 109.63558 * 294.86203 * 15 14 13 32 32 H 1.09003 * 109.46206 * 174.74729 * 15 14 13 33 33 H 1.09000 * 109.46161 * 178.49287 * 16 15 14 34 34 H 1.09003 * 109.44531 * 58.53001 * 16 15 14 35 35 H 1.08996 * 109.46761 * 295.14322 * 19 17 16 36 36 H 1.08998 * 109.46735 * 55.14280 * 19 17 16 37 37 H 1.09000 * 109.47250 * 300.00238 * 20 19 17 38 38 H 1.09004 * 109.47194 * 59.99898 * 20 19 17 39 39 H 0.96706 * 117.00102 * 180.02562 * 23 21 20 40 40 H 1.09009 * 109.58462 * 353.37779 * 24 13 11 41 41 H 1.08997 * 109.58527 * 113.79781 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 -0.0051 12 8 0.5621 -5.1073 0.0853 13 7 2.6255 -5.9058 -0.1109 14 6 4.0736 -5.6579 -0.1122 15 6 4.7193 -6.5279 0.9769 16 6 4.3322 -7.9909 0.7492 17 6 2.8127 -8.1403 0.8518 18 1 2.4796 -7.8043 1.8339 19 6 2.4289 -9.6085 0.6571 20 6 0.9245 -9.7763 0.8796 21 6 0.5464 -11.2223 0.6871 22 8 1.3934 -12.0354 0.4018 23 8 -0.7311 -11.6072 0.8337 24 6 2.1455 -7.2892 -0.2331 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 3.1567 -3.4355 0.0009 29 1 4.4881 -5.9192 -1.0859 30 1 4.2643 -4.6055 0.0979 31 1 4.3683 -6.2071 1.9579 32 1 5.8034 -6.4263 0.9276 33 1 4.8103 -8.6148 1.5044 34 1 4.6618 -8.3034 -0.2417 35 1 2.6831 -9.9191 -0.3563 36 1 2.9730 -10.2243 1.3732 37 1 0.6702 -9.4656 1.8929 38 1 0.3804 -9.1604 0.1634 39 1 -0.9251 -12.5452 0.7007 40 1 1.0635 -7.3134 -0.1028 41 1 2.4060 -7.6807 -1.2164 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343040942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:53 Heat of formation + Delta-G solvation = -139.747848 kcal Electronic energy + Delta-G solvation = -22479.267762 eV Core-core repulsion = 18972.396057 eV Total energy + Delta-G solvation = -3506.871704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55892 -39.89762 -37.66853 -36.41255 -34.59810 -34.14234 -32.38068 -32.03808 -30.01651 -27.34166 -25.45327 -25.01022 -22.53065 -22.42181 -20.88380 -20.29277 -19.13667 -18.35476 -17.98014 -16.69866 -16.50113 -16.01469 -15.72225 -15.14773 -14.72854 -14.63580 -14.30566 -13.82567 -13.62647 -13.50486 -13.18871 -13.10292 -12.91628 -12.41127 -12.01638 -11.90151 -11.78553 -11.74345 -11.44355 -11.13714 -10.94848 -10.92016 -10.86121 -10.79948 -10.68320 -10.42147 -10.26619 -9.37313 -9.32551 -8.72173 -8.37625 -7.70759 -6.14572 -4.21072 1.96317 2.80471 3.20096 3.25073 3.31636 3.34302 3.89609 4.31629 4.40803 4.58032 4.62318 4.79482 4.86495 4.89507 5.04853 5.10843 5.21516 5.28789 5.35241 5.39147 5.53327 5.63889 5.64943 5.76415 5.80521 5.84400 5.92664 6.03414 6.09531 6.24395 6.30832 6.80113 7.15863 7.52722 7.55713 7.58747 7.63846 7.87417 8.03415 8.76919 8.91664 9.33344 9.48766 10.95709 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.003137 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.460557 B = 8922.986146 C = 9788.257853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.266 3.734 10 N -0.730 5.730 11 C 0.697 3.303 12 O -0.600 6.600 13 N -0.638 5.638 14 C 0.112 3.888 15 C -0.135 4.135 16 C -0.111 4.111 17 C -0.104 4.104 18 H 0.079 0.921 19 C -0.099 4.099 20 C -0.120 4.120 21 C 0.480 3.520 22 O -0.521 6.521 23 O -0.518 6.518 24 C 0.133 3.867 25 H 0.266 0.734 26 H 0.023 0.977 27 H 0.025 0.975 28 H 0.386 0.614 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.408 0.592 40 H 0.093 0.907 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.490 -19.826 1.636 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.384 5.384 11 C 0.398 3.602 12 O -0.479 6.479 13 N -0.378 5.378 14 C -0.012 4.012 15 C -0.173 4.173 16 C -0.148 4.148 17 C -0.124 4.124 18 H 0.097 0.903 19 C -0.137 4.137 20 C -0.158 4.158 21 C 0.323 3.677 22 O -0.409 6.409 23 O -0.329 6.329 24 C 0.009 3.991 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.220 0.780 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.267 0.733 40 H 0.112 0.888 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.726 -19.582 1.669 20.772 hybrid contribution 0.769 0.386 -0.086 0.865 sum 7.495 -19.196 1.583 20.668 Atomic orbital electron populations 1.69980 1.06079 1.27245 1.48964 1.24942 0.94911 0.99376 0.94783 0.86419 0.79606 0.82699 0.78190 1.20488 1.21013 1.19784 1.21216 0.93205 0.90469 1.53089 0.92047 1.18978 0.87818 0.81118 0.97573 1.45889 1.10829 1.04456 1.77197 1.16065 0.84809 0.81104 0.78194 1.90848 1.14428 1.83855 1.58760 1.47271 1.05280 1.05905 1.79298 1.21653 0.80891 1.00060 0.98606 1.21996 1.00330 0.95298 0.99677 1.21516 0.94829 0.96399 1.02079 1.21593 0.96162 0.93978 1.00637 0.90282 1.21423 0.92590 0.96061 1.03607 1.21533 0.98958 0.89029 1.06247 1.23685 0.79467 0.92475 0.72078 1.90715 1.50810 1.55029 1.44390 1.84580 1.30401 1.34659 1.83283 1.21457 1.00497 0.80072 0.97093 0.92470 0.95859 0.95679 0.77963 0.91790 0.90092 0.91341 0.90886 0.91764 0.91697 0.90728 0.90722 0.87300 0.86952 0.73332 0.88840 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.17 5.43 -5.19 -0.03 7.14 16 10 N -0.73 -15.86 5.46 -66.41 -0.36 -16.22 16 11 C 0.70 14.56 8.29 -86.92 -0.72 13.84 16 12 O -0.60 -14.87 15.77 5.29 0.08 -14.79 16 13 N -0.64 -9.79 2.97 -178.23 -0.53 -10.32 16 14 C 0.11 1.32 6.42 -3.49 -0.02 1.30 16 15 C -0.13 -1.28 6.10 -26.39 -0.16 -1.44 16 16 C -0.11 -0.96 5.17 -26.69 -0.14 -1.10 16 17 C -0.10 -1.02 2.34 -90.50 -0.21 -1.23 16 18 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 19 C -0.10 -0.84 3.98 -26.73 -0.11 -0.95 16 20 C -0.12 -1.02 5.57 -27.88 -0.16 -1.17 16 21 C 0.48 4.57 8.33 36.01 0.30 4.87 16 22 O -0.52 -6.38 16.74 -18.75 -0.31 -6.69 16 23 O -0.52 -4.04 13.42 -39.23 -0.53 -4.57 16 24 C 0.13 1.67 5.33 -3.71 -0.02 1.65 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.39 7.24 5.81 -40.82 -0.24 7.01 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.99 5.64 -51.92 -0.29 0.69 16 31 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.11 0.95 6.70 -51.93 -0.35 0.61 16 39 H 0.41 1.46 9.10 45.56 0.41 1.87 16 40 H 0.09 1.33 5.71 -51.92 -0.30 1.04 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -35.11 336.67 -7.90 -43.01 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.36 Total: 4.61 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -1.68 Total: 9.50 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.15 Total: -51.97 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.76 Total: -26.05 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.11 -7.90 -43.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343040942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.737 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds