Wall clock time and date at job start Tue Mar 31 2020 05:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00158 * 2 1 4 4 H 1.48499 * 109.47430 * 269.99554 * 3 2 1 5 5 H 1.48499 * 109.47239 * 29.99462 * 3 2 1 6 6 H 1.48506 * 109.47432 * 149.99506 * 3 2 1 7 7 C 1.37879 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00154 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00164 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46986 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99789 * 180.27475 * 10 9 7 12 12 O 1.21586 * 120.00241 * 354.80338 * 11 10 9 13 13 N 1.34775 * 119.99624 * 174.79922 * 11 10 9 14 14 C 1.46918 * 120.63657 * 4.94333 * 13 11 10 15 15 C 1.53617 * 108.54834 * 126.36594 * 14 13 11 16 16 C 1.53039 * 109.24327 * 54.85488 * 15 14 13 17 17 C 1.53035 * 109.54076 * 298.51557 * 16 15 14 18 18 H 1.09007 * 109.49490 * 301.41468 * 17 16 15 19 19 C 1.53000 * 109.52753 * 181.33178 * 17 16 15 20 20 C 1.52993 * 109.47219 * 175.14293 * 19 17 16 21 21 C 1.50704 * 109.47276 * 179.97438 * 20 19 17 22 22 O 1.20826 * 119.99482 * 0.02562 * 21 20 19 23 23 O 1.34221 * 120.00094 * 179.97438 * 21 20 19 24 24 C 1.46933 * 120.62967 * 185.21607 * 13 11 10 25 25 H 0.96998 * 119.99836 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46955 * 60.00206 * 9 7 2 27 27 H 1.09003 * 109.47323 * 299.99854 * 9 7 2 28 28 H 0.97004 * 120.00180 * 0.02562 * 10 9 7 29 29 H 1.09003 * 109.58717 * 246.20331 * 14 13 11 30 30 H 1.09007 * 109.58382 * 6.61854 * 14 13 11 31 31 H 1.09008 * 109.63558 * 294.86203 * 15 14 13 32 32 H 1.09003 * 109.46206 * 174.74729 * 15 14 13 33 33 H 1.09000 * 109.46161 * 178.49287 * 16 15 14 34 34 H 1.09003 * 109.44531 * 58.53001 * 16 15 14 35 35 H 1.08996 * 109.46761 * 295.14322 * 19 17 16 36 36 H 1.08998 * 109.46735 * 55.14280 * 19 17 16 37 37 H 1.09000 * 109.47250 * 300.00238 * 20 19 17 38 38 H 1.09004 * 109.47194 * 59.99898 * 20 19 17 39 39 H 0.96706 * 117.00102 * 180.02562 * 23 21 20 40 40 H 1.09009 * 109.58462 * 353.37779 * 24 13 11 41 41 H 1.08997 * 109.58527 * 113.79781 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 -0.0051 12 8 0.5621 -5.1073 0.0853 13 7 2.6255 -5.9058 -0.1109 14 6 4.0736 -5.6579 -0.1122 15 6 4.7193 -6.5279 0.9769 16 6 4.3322 -7.9909 0.7492 17 6 2.8127 -8.1403 0.8518 18 1 2.4796 -7.8043 1.8339 19 6 2.4289 -9.6085 0.6571 20 6 0.9245 -9.7763 0.8796 21 6 0.5464 -11.2223 0.6871 22 8 1.3934 -12.0354 0.4018 23 8 -0.7311 -11.6072 0.8337 24 6 2.1455 -7.2892 -0.2331 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 3.1567 -3.4355 0.0009 29 1 4.4881 -5.9192 -1.0859 30 1 4.2643 -4.6055 0.0979 31 1 4.3683 -6.2071 1.9579 32 1 5.8034 -6.4263 0.9276 33 1 4.8103 -8.6148 1.5044 34 1 4.6618 -8.3034 -0.2417 35 1 2.6831 -9.9191 -0.3563 36 1 2.9730 -10.2243 1.3732 37 1 0.6702 -9.4656 1.8929 38 1 0.3804 -9.1604 0.1634 39 1 -0.9251 -12.5452 0.7007 40 1 1.0635 -7.3134 -0.1028 41 1 2.4060 -7.6807 -1.2164 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343040942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:53 Heat of formation + Delta-G solvation = -164.981496 kcal Electronic energy + Delta-G solvation = -22480.361975 eV Core-core repulsion = 18972.396057 eV Total energy + Delta-G solvation = -3507.965917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47314 -41.11948 -38.89711 -37.15909 -36.19810 -35.55448 -34.22812 -33.16705 -30.93801 -29.26121 -26.41191 -26.21906 -24.34932 -23.37714 -21.80292 -21.24222 -20.61628 -19.47909 -19.01727 -18.03817 -17.48009 -17.40335 -17.04882 -16.51556 -16.44613 -15.78254 -15.30753 -15.05596 -14.71586 -14.68039 -14.30475 -14.21578 -14.05342 -13.87838 -13.64404 -13.27944 -12.88556 -12.75493 -12.70071 -12.53201 -12.28326 -12.13701 -11.91074 -11.76119 -11.60090 -11.54613 -11.44801 -11.25354 -11.04479 -10.79157 -10.00293 -9.32459 -8.27396 -6.43943 1.21603 1.44083 1.46983 1.57880 1.82587 2.18433 2.23895 2.39742 3.07489 3.21360 3.69400 3.83024 3.86066 4.07675 4.12212 4.25226 4.29107 4.42985 4.57083 4.62752 4.69178 4.83289 4.86294 4.93346 4.98623 5.03124 5.12904 5.18072 5.26678 5.28319 5.30951 5.49712 5.52931 5.61468 5.64996 5.78576 5.86651 6.15987 6.67665 7.01100 7.20908 7.26446 7.72701 8.85041 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.003137 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.460557 B = 8922.986146 C = 9788.257853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.286 3.714 10 N -0.726 5.726 11 C 0.691 3.309 12 O -0.647 6.647 13 N -0.628 5.628 14 C 0.102 3.898 15 C -0.128 4.128 16 C -0.108 4.108 17 C -0.093 4.093 18 H 0.067 0.933 19 C -0.089 4.089 20 C -0.123 4.123 21 C 0.486 3.514 22 O -0.550 6.550 23 O -0.518 6.518 24 C 0.126 3.874 25 H 0.269 0.731 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.402 0.598 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.426 0.574 40 H 0.071 0.929 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.354 -20.260 1.654 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.592 4.592 8 H 0.100 0.900 9 C 0.163 3.837 10 N -0.381 5.381 11 C 0.392 3.608 12 O -0.530 6.530 13 N -0.365 5.365 14 C -0.020 4.020 15 C -0.166 4.166 16 C -0.146 4.146 17 C -0.113 4.113 18 H 0.086 0.914 19 C -0.127 4.127 20 C -0.160 4.160 21 C 0.331 3.669 22 O -0.441 6.441 23 O -0.332 6.332 24 C 0.003 3.997 25 H 0.078 0.922 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.239 0.761 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.288 0.712 40 H 0.089 0.911 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.652 -20.087 1.685 22.350 hybrid contribution -0.182 0.403 -0.103 0.454 sum 9.471 -19.685 1.583 21.902 Atomic orbital electron populations 1.70145 1.08277 1.28565 1.49929 1.26066 0.95785 1.03855 0.93850 0.85144 0.78483 0.76888 0.78614 1.19559 1.20947 1.17886 1.21580 0.94218 0.90489 1.52943 0.89977 1.18391 0.88104 0.83406 0.93821 1.45496 1.10827 1.03959 1.77852 1.16273 0.84867 0.81709 0.77921 1.90808 1.16895 1.84626 1.60712 1.47321 1.06314 1.05516 1.77352 1.22003 0.78470 1.00584 1.00937 1.21972 1.01669 0.95185 0.97807 1.21539 0.93478 0.96052 1.03483 1.21483 0.97104 0.93977 0.98701 0.91417 1.21326 0.92515 0.94987 1.03860 1.21575 0.99153 0.88593 1.06679 1.23752 0.79528 0.92453 0.71184 1.90704 1.51626 1.55836 1.45948 1.84546 1.29454 1.36445 1.82759 1.21711 0.99707 0.78961 0.99324 0.92231 0.99788 0.99773 0.76051 0.89481 0.90629 0.92667 0.88101 0.89987 0.90402 0.90598 0.90026 0.86500 0.87253 0.71220 0.91057 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.99 42.32 29.54 68.60 2.03 44.35 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.55 -30.51 9.28 25.60 0.24 -30.27 16 8 H 0.08 4.08 7.60 -2.91 -0.02 4.05 16 9 C 0.29 16.14 5.43 85.63 0.47 16.61 16 10 N -0.73 -32.33 5.46 -482.29 -2.63 -34.96 16 11 C 0.69 29.71 8.29 179.05 1.49 31.19 16 12 O -0.65 -33.82 15.77 -3.99 -0.06 -33.89 16 13 N -0.63 -18.92 2.97 -836.07 -2.48 -21.40 16 14 C 0.10 2.19 6.42 86.51 0.56 2.74 16 15 C -0.13 -2.05 6.10 30.81 0.19 -1.86 16 16 C -0.11 -1.51 5.17 30.62 0.16 -1.35 16 17 C -0.09 -1.66 2.34 -10.72 -0.03 -1.68 16 18 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 19 C -0.09 -1.37 3.98 30.59 0.12 -1.24 16 20 C -0.12 -1.98 5.57 29.85 0.17 -1.82 16 21 C 0.49 8.81 8.33 71.24 0.59 9.41 16 22 O -0.55 -12.91 16.74 21.97 0.37 -12.55 16 23 O -0.52 -7.54 13.42 -51.33 -0.69 -8.23 16 24 C 0.13 3.08 5.33 86.36 0.46 3.54 16 25 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 26 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 27 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 28 H 0.40 14.98 5.81 -92.71 -0.54 14.44 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.70 5.64 -2.38 -0.01 1.69 16 31 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.18 8.10 -2.39 -0.02 1.16 16 36 H 0.08 1.20 8.10 -2.39 -0.02 1.18 16 37 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.11 1.86 6.70 -2.38 -0.02 1.84 16 39 H 0.43 2.52 9.10 -74.05 -0.67 1.84 16 40 H 0.07 2.09 5.71 -2.38 -0.01 2.08 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -78.94 336.67 1.52 -77.42 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -0.16 Total: 19.53 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: 4.87 Total: 25.96 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -4.83 Total: -112.59 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -0.38 Total: -54.66 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -78.94 1.52 -77.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343040942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.564 kcal (2) G-P(sol) polarization free energy of solvation -78.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds