Wall clock time and date at job start Tue Mar 31 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46965 * 2 1 4 4 H 1.08995 * 109.47387 * 55.00686 * 3 2 1 5 5 C 1.50696 * 109.46974 * 175.00444 * 3 2 1 6 6 H 1.08002 * 120.00714 * 120.00304 * 5 3 2 7 7 C 1.37884 * 120.00233 * 299.99974 * 5 3 2 8 8 N 1.31519 * 119.99545 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00397 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47237 * 59.99955 * 9 7 5 11 11 H 1.48502 * 109.47378 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47045 * 299.99972 * 9 7 5 13 13 O 1.45203 * 109.47422 * 295.00410 * 3 2 1 14 14 C 1.34223 * 117.00342 * 90.00019 * 13 3 2 15 15 O 1.20833 * 119.99818 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00106 * 180.02562 * 14 13 3 17 17 N 1.46509 * 109.47014 * 180.02562 * 16 14 13 18 18 C 1.34779 * 119.99795 * 180.02562 * 17 16 14 19 19 O 1.21578 * 120.00186 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99572 * 179.97438 * 18 17 16 21 21 C 1.47024 * 125.64847 * 359.68614 * 20 18 17 22 22 C 1.54327 * 107.26851 * 181.32598 * 21 20 18 23 23 C 1.55154 * 102.94372 * 22.19158 * 22 21 20 24 24 C 1.47426 * 125.64645 * 179.97438 * 20 18 17 25 25 H 1.08999 * 109.46955 * 299.99547 * 1 2 3 26 26 H 1.09005 * 109.47444 * 59.99803 * 1 2 3 27 27 H 1.08997 * 109.47419 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46955 * 240.00453 * 2 1 3 29 29 H 1.08996 * 109.47335 * 120.00133 * 2 1 3 30 30 H 0.97002 * 119.99984 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47855 * 59.99945 * 16 14 13 32 32 H 1.08995 * 109.46982 * 299.99222 * 16 14 13 33 33 H 0.97004 * 119.99661 * 359.97438 * 17 16 14 34 34 H 1.08997 * 109.88062 * 300.74548 * 21 20 18 35 35 H 1.09000 * 109.88248 * 61.90735 * 21 20 18 36 36 H 1.09005 * 110.71834 * 263.82776 * 22 21 20 37 37 H 1.08999 * 110.71553 * 140.55738 * 22 21 20 38 38 H 1.09000 * 111.00849 * 206.42090 * 23 22 21 39 39 H 1.09001 * 111.00585 * 82.56882 * 23 22 21 40 40 H 1.09004 * 110.36499 * 274.44757 * 24 20 18 41 41 H 1.08998 * 110.36482 * 36.65820 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3374 2.1732 9 14 6.0049 0.8812 1.3816 10 1 6.4995 2.2815 1.3819 11 1 6.3979 0.2177 2.6507 12 1 6.5974 0.1473 0.2346 13 8 1.6557 2.0918 -1.2407 14 6 0.4726 2.7255 -1.2559 15 8 -0.2194 2.7370 -0.2654 16 6 0.0068 3.4217 -2.5086 17 7 -1.3032 4.0325 -2.2694 18 6 -1.9197 4.7129 -3.2561 19 8 -1.3884 4.8203 -4.3444 20 7 -3.1251 5.2744 -3.0363 21 6 -3.8802 5.2166 -1.7761 22 6 -5.2096 5.9667 -2.0038 23 6 -5.3765 5.9178 -3.5456 24 6 -3.9075 6.0430 -4.0214 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8293 -0.0611 2.9498 31 1 -0.0722 2.6972 -3.3191 32 1 0.7237 4.1959 -2.7818 33 1 -1.7272 3.9465 -1.4012 34 1 -4.0809 4.1785 -1.5114 35 1 -3.3127 5.7009 -0.9814 36 1 -5.1353 6.9972 -1.6564 37 1 -6.0330 5.4506 -1.5101 38 1 -5.9749 6.7568 -3.9006 39 1 -5.8103 4.9691 -3.8617 40 1 -3.5961 7.0876 -4.0213 41 1 -3.7914 5.6134 -5.0164 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344578348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:22 Heat of formation + Delta-G solvation = -120.119749 kcal Electronic energy + Delta-G solvation = -22691.459072 eV Core-core repulsion = 19185.438506 eV Total energy + Delta-G solvation = -3506.020566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.46379 -39.65004 -37.68087 -36.10134 -34.32075 -33.58204 -31.85334 -31.39888 -29.36333 -28.12585 -26.94830 -23.77487 -23.14512 -21.53581 -20.96778 -20.07630 -19.60060 -18.52461 -16.95884 -16.73833 -16.65833 -16.10594 -15.60099 -15.38232 -14.89710 -14.66368 -13.93893 -13.86331 -13.55809 -13.35115 -12.95320 -12.88220 -12.79185 -12.43677 -11.93912 -11.68022 -11.54010 -11.52380 -11.35330 -11.24898 -11.09527 -10.98566 -10.71529 -10.36332 -10.26758 -9.89799 -9.75483 -9.45195 -9.23943 -8.88474 -8.68139 -8.49741 -6.22617 -4.29956 2.36606 2.80483 3.13503 3.24694 3.28190 3.30054 3.49429 3.95841 4.26078 4.30309 4.34235 4.57986 4.95257 5.06268 5.09372 5.30553 5.39109 5.45965 5.48704 5.51957 5.54792 5.56707 5.65209 5.81592 6.05162 6.16727 6.22867 6.33182 6.40951 6.79753 6.88507 6.92037 7.09663 7.16090 7.56082 7.67399 7.85213 7.86525 8.09488 8.46686 8.53668 8.80986 9.35317 10.84078 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034151 B = 0.003188 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.692049 B = 8779.856375 C = 9094.950654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.524 4.524 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.913 3.087 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.273 1.273 13 O -0.349 6.349 14 C 0.450 3.550 15 O -0.517 6.517 16 C 0.142 3.858 17 N -0.733 5.733 18 C 0.727 3.273 19 O -0.590 6.590 20 N -0.638 5.638 21 C 0.095 3.905 22 C -0.129 4.129 23 C -0.135 4.135 24 C 0.125 3.875 25 H 0.053 0.947 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.110 0.890 30 H 0.267 0.733 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.408 0.592 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.159 8.829 -7.442 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.562 4.562 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.264 6.264 14 C 0.293 3.707 15 O -0.408 6.408 16 C 0.017 3.983 17 N -0.392 5.392 18 C 0.429 3.571 19 O -0.468 6.468 20 N -0.377 5.377 21 C -0.028 4.028 22 C -0.167 4.167 23 C -0.173 4.173 24 C 0.002 3.998 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.245 0.755 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.787 8.720 -7.734 19.624 hybrid contribution 0.678 -0.181 0.802 1.065 sum -15.109 8.539 -6.932 18.689 Atomic orbital electron populations 1.21856 0.98375 0.99102 1.00616 1.22034 0.92630 0.99268 1.03542 1.20749 0.95138 0.88776 0.78300 0.93355 1.21010 0.89565 1.39218 1.06366 0.91242 1.24885 0.99337 0.94669 0.95002 1.69878 1.35537 1.37700 1.09472 0.86317 0.83717 0.78533 0.77493 1.19960 1.21029 1.19878 1.86476 1.33367 1.62024 1.44500 1.23065 0.81392 0.77168 0.89082 1.90592 1.55573 1.58872 1.35751 1.20473 0.84717 0.98599 0.94551 1.44807 1.20890 1.57693 1.15821 1.15221 0.79671 0.78365 0.83862 1.90932 1.65822 1.66092 1.23972 1.47518 1.18366 1.57306 1.14559 1.22056 0.92877 1.01065 0.86829 1.22604 0.96406 1.01191 0.96525 1.22814 0.95876 1.03093 0.95495 1.22074 0.89239 0.95624 0.92888 0.92816 0.95055 0.94735 0.93814 0.87218 0.92283 0.87718 0.87613 0.75470 0.91336 0.91285 0.90404 0.89866 0.89671 0.90499 0.91631 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.56 37.16 0.32 -2.69 16 2 C -0.14 -3.31 5.49 -26.73 -0.15 -3.46 16 3 C 0.22 5.75 2.25 -27.89 -0.06 5.69 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.40 8.90 -34.44 -0.31 -14.71 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.64 11.29 55.43 0.63 -24.01 16 9 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 O -0.35 -7.98 9.81 -39.24 -0.38 -8.37 16 14 C 0.45 8.85 6.48 36.00 0.23 9.09 16 15 O -0.52 -10.92 12.81 -18.76 -0.24 -11.16 16 16 C 0.14 2.25 6.27 -5.19 -0.03 2.21 16 17 N -0.73 -10.78 5.49 -66.41 -0.36 -11.15 16 18 C 0.73 10.98 8.49 -86.91 -0.74 10.24 16 19 O -0.59 -10.79 16.59 5.30 0.09 -10.70 16 20 N -0.64 -7.43 3.33 -176.22 -0.59 -8.01 16 21 C 0.09 0.83 6.15 -3.06 -0.02 0.81 16 22 C -0.13 -0.77 6.95 -24.90 -0.17 -0.94 16 23 C -0.13 -0.82 7.09 -24.57 -0.17 -0.99 16 24 C 0.12 1.15 6.91 -2.52 -0.02 1.13 16 25 H 0.05 1.18 7.80 -51.93 -0.40 0.78 16 26 H 0.03 0.63 6.06 -51.93 -0.31 0.32 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 32 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.41 5.75 6.43 -40.82 -0.26 5.48 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -31.52 336.10 -8.30 -39.82 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.27 Total: 4.73 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -1.21 Total: 7.99 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.32 Total: -43.17 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.54 Total: -30.23 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.52 -8.30 -39.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344578348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.295 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds