Wall clock time and date at job start Tue Mar 31 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46965 * 2 1 4 4 H 1.08995 * 109.47387 * 55.00686 * 3 2 1 5 5 C 1.50696 * 109.46974 * 175.00444 * 3 2 1 6 6 H 1.08002 * 120.00714 * 120.00304 * 5 3 2 7 7 C 1.37884 * 120.00233 * 299.99974 * 5 3 2 8 8 N 1.31519 * 119.99545 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00397 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47237 * 59.99955 * 9 7 5 11 11 H 1.48502 * 109.47378 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47045 * 299.99972 * 9 7 5 13 13 O 1.45203 * 109.47422 * 295.00410 * 3 2 1 14 14 C 1.34223 * 117.00342 * 90.00019 * 13 3 2 15 15 O 1.20833 * 119.99818 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00106 * 180.02562 * 14 13 3 17 17 N 1.46509 * 109.47014 * 180.02562 * 16 14 13 18 18 C 1.34779 * 119.99795 * 180.02562 * 17 16 14 19 19 O 1.21578 * 120.00186 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99572 * 179.97438 * 18 17 16 21 21 C 1.47024 * 125.64847 * 359.68614 * 20 18 17 22 22 C 1.54327 * 107.26851 * 181.32598 * 21 20 18 23 23 C 1.55154 * 102.94372 * 22.19158 * 22 21 20 24 24 C 1.47426 * 125.64645 * 179.97438 * 20 18 17 25 25 H 1.08999 * 109.46955 * 299.99547 * 1 2 3 26 26 H 1.09005 * 109.47444 * 59.99803 * 1 2 3 27 27 H 1.08997 * 109.47419 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46955 * 240.00453 * 2 1 3 29 29 H 1.08996 * 109.47335 * 120.00133 * 2 1 3 30 30 H 0.97002 * 119.99984 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47855 * 59.99945 * 16 14 13 32 32 H 1.08995 * 109.46982 * 299.99222 * 16 14 13 33 33 H 0.97004 * 119.99661 * 359.97438 * 17 16 14 34 34 H 1.08997 * 109.88062 * 300.74548 * 21 20 18 35 35 H 1.09000 * 109.88248 * 61.90735 * 21 20 18 36 36 H 1.09005 * 110.71834 * 263.82776 * 22 21 20 37 37 H 1.08999 * 110.71553 * 140.55738 * 22 21 20 38 38 H 1.09000 * 111.00849 * 206.42090 * 23 22 21 39 39 H 1.09001 * 111.00585 * 82.56882 * 23 22 21 40 40 H 1.09004 * 110.36499 * 274.44757 * 24 20 18 41 41 H 1.08998 * 110.36482 * 36.65820 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3374 2.1732 9 14 6.0049 0.8812 1.3816 10 1 6.4995 2.2815 1.3819 11 1 6.3979 0.2177 2.6507 12 1 6.5974 0.1473 0.2346 13 8 1.6557 2.0918 -1.2407 14 6 0.4726 2.7255 -1.2559 15 8 -0.2194 2.7370 -0.2654 16 6 0.0068 3.4217 -2.5086 17 7 -1.3032 4.0325 -2.2694 18 6 -1.9197 4.7129 -3.2561 19 8 -1.3884 4.8203 -4.3444 20 7 -3.1251 5.2744 -3.0363 21 6 -3.8802 5.2166 -1.7761 22 6 -5.2096 5.9667 -2.0038 23 6 -5.3765 5.9178 -3.5456 24 6 -3.9075 6.0430 -4.0214 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8293 -0.0611 2.9498 31 1 -0.0722 2.6972 -3.3191 32 1 0.7237 4.1959 -2.7818 33 1 -1.7272 3.9465 -1.4012 34 1 -4.0809 4.1785 -1.5114 35 1 -3.3127 5.7009 -0.9814 36 1 -5.1353 6.9972 -1.6564 37 1 -6.0330 5.4506 -1.5101 38 1 -5.9749 6.7568 -3.9006 39 1 -5.8103 4.9691 -3.8617 40 1 -3.5961 7.0876 -4.0213 41 1 -3.7914 5.6134 -5.0164 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344578348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:21 Heat of formation + Delta-G solvation = -139.885211 kcal Electronic energy + Delta-G solvation = -22692.316167 eV Core-core repulsion = 19185.438506 eV Total energy + Delta-G solvation = -3506.877661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.77881 -41.07546 -38.62301 -37.81797 -35.64952 -35.53837 -33.38796 -32.65539 -30.15807 -29.61910 -28.60544 -25.29713 -24.47922 -22.72946 -22.02968 -21.41463 -21.15929 -19.65606 -18.75213 -18.37061 -17.71423 -17.52827 -17.04557 -16.88948 -16.39310 -15.98562 -15.36433 -14.83161 -14.77346 -14.52225 -14.39556 -14.12200 -13.94031 -13.57879 -13.36739 -13.28011 -13.22617 -13.12346 -12.81846 -12.56192 -12.21194 -12.16666 -12.13525 -11.77812 -11.58689 -11.54771 -11.51520 -11.35104 -10.85704 -10.53928 -10.46381 -9.61026 -8.28234 -6.44670 1.18753 1.21446 1.43138 1.45378 1.53830 1.96728 2.04245 2.40603 2.89300 3.01742 3.67403 3.68574 3.80616 4.07370 4.21308 4.26911 4.31036 4.37733 4.39475 4.49058 4.54510 4.63512 4.81572 4.86519 4.92721 4.99655 5.06269 5.12287 5.13378 5.20092 5.24084 5.36031 5.36579 5.50475 5.66292 5.89337 5.94164 6.08969 6.57319 6.76267 6.88054 7.25987 7.35676 8.78086 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034151 B = 0.003188 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.692049 B = 8779.856375 C = 9094.950654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.227 3.773 4 H 0.014 0.986 5 C -0.553 4.553 6 H 0.065 0.935 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.979 3.021 10 H -0.270 1.270 11 H -0.277 1.277 12 H -0.266 1.266 13 O -0.358 6.358 14 C 0.451 3.549 15 O -0.532 6.532 16 C 0.155 3.845 17 N -0.730 5.730 18 C 0.722 3.278 19 O -0.627 6.627 20 N -0.638 5.638 21 C 0.086 3.914 22 C -0.121 4.121 23 C -0.123 4.123 24 C 0.114 3.886 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.271 0.729 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.411 0.589 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.152 9.323 -7.785 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.169 4.169 3 C 0.174 3.826 4 H 0.032 0.968 5 C -0.591 4.591 6 H 0.084 0.916 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.802 3.198 10 H -0.195 1.195 11 H -0.202 1.202 12 H -0.190 1.190 13 O -0.273 6.273 14 C 0.294 3.706 15 O -0.423 6.423 16 C 0.029 3.971 17 N -0.390 5.390 18 C 0.424 3.576 19 O -0.509 6.509 20 N -0.376 5.376 21 C -0.037 4.037 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.008 4.008 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.249 0.751 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.839 9.234 -8.067 20.830 hybrid contribution 0.903 -0.282 0.914 1.316 sum -15.936 8.953 -7.152 19.628 Atomic orbital electron populations 1.21710 0.96049 1.00695 1.00205 1.21885 0.94669 0.97963 1.02431 1.20448 0.94516 0.89362 0.78318 0.96840 1.21315 0.90624 1.40159 1.06961 0.91630 1.25752 1.04055 0.93860 0.94369 1.69992 1.37426 1.37785 1.09812 0.85295 0.77907 0.78742 0.77856 1.19476 1.20203 1.19032 1.86455 1.35165 1.62703 1.43014 1.23721 0.80183 0.76493 0.90160 1.90584 1.55668 1.59244 1.36763 1.20415 0.85470 0.98800 0.92375 1.44730 1.20468 1.57761 1.16020 1.15371 0.80547 0.78478 0.83238 1.90898 1.67118 1.67547 1.25296 1.47682 1.17377 1.56231 1.16262 1.22309 0.94087 1.01740 0.85517 1.22628 0.95080 1.01644 0.96496 1.22803 0.93660 1.04232 0.95407 1.22328 0.91098 0.95379 0.91966 0.94162 0.94405 0.92106 0.93605 0.89460 0.91986 0.86355 0.86643 0.75091 0.91274 0.91299 0.89278 0.88046 0.87185 0.90429 0.91066 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.42 8.56 71.98 0.62 -4.80 16 2 C -0.13 -6.44 5.49 30.59 0.17 -6.27 16 3 C 0.23 11.99 2.25 29.85 0.07 12.05 16 4 H 0.01 0.81 7.16 -2.39 -0.02 0.79 16 5 C -0.55 -30.93 8.90 25.60 0.23 -30.70 16 6 H 0.07 3.61 7.81 -2.91 -0.02 3.59 16 7 C 0.02 1.07 5.29 84.66 0.45 1.52 16 8 N -0.91 -51.24 11.29 21.45 0.24 -51.00 16 9 Si 0.98 42.49 29.54 68.60 2.03 44.52 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 13 O -0.36 -16.60 9.81 -51.35 -0.50 -17.10 16 14 C 0.45 17.76 6.48 71.23 0.46 18.22 16 15 O -0.53 -22.64 12.81 21.94 0.28 -22.36 16 16 C 0.16 4.81 6.27 85.63 0.54 5.35 16 17 N -0.73 -21.12 5.49 -482.30 -2.65 -23.77 16 18 C 0.72 21.51 8.49 179.05 1.52 23.03 16 19 O -0.63 -22.94 16.59 -3.96 -0.07 -23.00 16 20 N -0.64 -14.25 3.33 -829.71 -2.76 -17.01 16 21 C 0.09 1.36 6.15 86.73 0.53 1.89 16 22 C -0.12 -1.09 6.95 31.78 0.22 -0.87 16 23 C -0.12 -1.17 7.09 31.99 0.23 -0.94 16 24 C 0.11 1.96 6.91 86.86 0.60 2.56 16 25 H 0.04 1.77 7.80 -2.39 -0.02 1.75 16 26 H 0.04 1.50 6.06 -2.38 -0.01 1.49 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.09 4.69 5.95 -2.39 -0.01 4.68 16 30 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 33 H 0.41 11.39 6.43 -92.71 -0.60 10.79 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.06 1.30 8.03 -2.39 -0.02 1.28 16 Total: -1.00 -68.62 336.10 2.63 -65.99 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.43 Total: 22.69 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 5.63 Total: 21.05 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -5.16 Total: -91.78 kcal Atomic # 8 Polarization: -62.17 SS G_CDS: -0.29 Total: -62.46 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -68.62 2.63 -65.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344578348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.900 kcal (2) G-P(sol) polarization free energy of solvation -68.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds