Wall clock time and date at job start Tue Mar 31 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46827 * 2 1 4 4 H 1.09007 * 109.46903 * 305.58385 * 3 2 1 5 5 C 1.50702 * 109.47133 * 185.59075 * 3 2 1 6 6 H 1.08000 * 119.99593 * 274.99404 * 5 3 2 7 7 C 1.37881 * 120.00188 * 94.98729 * 5 3 2 8 8 N 1.31513 * 119.99687 * 184.83822 * 7 5 3 9 9 Si 1.86794 * 120.00115 * 4.84413 * 7 5 3 10 10 H 1.48506 * 109.47231 * 84.86299 * 9 7 5 11 11 H 1.48496 * 109.47318 * 204.86520 * 9 7 5 12 12 H 1.48501 * 109.47379 * 324.86718 * 9 7 5 13 13 O 1.45191 * 109.47422 * 65.58765 * 3 2 1 14 14 C 1.34235 * 117.00168 * 269.99917 * 13 3 2 15 15 O 1.20827 * 119.99857 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00357 * 179.97438 * 14 13 3 17 17 N 1.46495 * 109.47265 * 180.02562 * 16 14 13 18 18 C 1.34779 * 120.00140 * 180.02562 * 17 16 14 19 19 O 1.21593 * 119.99835 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00304 * 179.97438 * 18 17 16 21 21 C 1.47023 * 125.64586 * 359.69735 * 20 18 17 22 22 C 1.54319 * 107.27402 * 180.96694 * 21 20 18 23 23 C 1.55153 * 102.86338 * 22.52187 * 22 21 20 24 24 C 1.47427 * 125.64848 * 179.97438 * 20 18 17 25 25 H 1.09001 * 109.47131 * 299.99945 * 1 2 3 26 26 H 1.09007 * 109.46616 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47225 * 60.00388 * 1 2 3 28 28 H 1.09004 * 109.47353 * 119.99183 * 2 1 3 29 29 H 1.09001 * 109.47596 * 239.99800 * 2 1 3 30 30 H 0.97001 * 120.00050 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47495 * 300.00392 * 16 14 13 32 32 H 1.09006 * 109.47024 * 59.99984 * 16 14 13 33 33 H 0.96997 * 120.00054 * 359.97438 * 17 16 14 34 34 H 1.09002 * 109.87976 * 300.51226 * 21 20 18 35 35 H 1.08998 * 109.88093 * 61.67239 * 21 20 18 36 36 H 1.09000 * 110.91662 * 264.10781 * 22 21 20 37 37 H 1.08993 * 110.58766 * 140.78728 * 22 21 20 38 38 H 1.08997 * 111.00457 * 206.22711 * 23 22 21 39 39 H 1.08999 * 111.00100 * 82.37776 * 23 22 21 40 40 H 1.08995 * 110.36970 * 274.67787 * 24 20 18 41 41 H 1.08996 * 110.36616 * 36.89559 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5972 1.9844 -0.8358 5 6 3.5406 1.4449 -0.1384 6 1 4.1637 1.3341 0.7367 7 6 4.1180 1.5883 -1.3823 8 7 5.4230 1.4952 -1.5160 9 14 3.0467 1.9150 -2.8772 10 1 2.7807 3.3720 -2.9867 11 1 3.7470 1.4464 -4.1000 12 1 1.7607 1.1866 -2.7335 13 8 1.6678 2.0875 1.2465 14 6 0.4848 2.7212 1.2754 15 8 -0.2167 2.7360 0.2917 16 6 0.0312 3.4131 2.5349 17 7 -1.2816 4.0235 2.3110 18 6 -1.8881 4.7012 3.3056 19 8 -1.3455 4.8064 4.3886 20 7 -3.0956 5.2633 3.0995 21 6 -3.8577 5.2199 1.8429 22 6 -5.1609 6.0147 2.0697 23 6 -4.7967 6.9437 3.2577 24 6 -3.8685 6.0283 4.0950 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5137 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 5.8292 1.5957 -2.3911 31 1 -0.0399 2.6857 3.3436 32 1 0.7508 4.1864 2.8039 33 1 -1.7139 3.9406 1.4467 34 1 -3.2772 5.6769 1.0414 35 1 -4.0951 4.1869 1.5889 36 1 -5.9811 5.3488 2.3381 37 1 -5.4116 6.6000 1.1851 38 1 -5.6859 7.2208 3.8239 39 1 -4.2638 7.8294 2.9119 40 1 -4.4592 5.3548 4.7158 41 1 -3.2011 6.6271 4.7147 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344578352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:25 Heat of formation + Delta-G solvation = -119.218513 kcal Electronic energy + Delta-G solvation = -22797.597428 eV Core-core repulsion = 19291.615942 eV Total energy + Delta-G solvation = -3505.981485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.52310 -39.77599 -37.72554 -36.24110 -34.38174 -33.48391 -32.08797 -31.83043 -29.40242 -28.35591 -27.34819 -23.78012 -22.99325 -21.59562 -21.13739 -20.12443 -19.71840 -18.62956 -17.28619 -16.92181 -16.73080 -16.05887 -15.84855 -15.63663 -14.94176 -14.56882 -13.97754 -13.89460 -13.70954 -13.32265 -13.24076 -12.95150 -12.74563 -12.56036 -12.17101 -12.12188 -11.72888 -11.69553 -11.56791 -11.44720 -11.12923 -11.05379 -10.85871 -10.35627 -10.27269 -10.03669 -9.87129 -9.45128 -9.28010 -9.14982 -8.76484 -8.71809 -6.33127 -4.37549 2.31474 2.68291 3.09772 3.15322 3.24430 3.28800 3.38064 3.90519 4.20562 4.22588 4.31014 4.54817 4.91842 4.95560 5.03106 5.26086 5.33213 5.36603 5.43357 5.48579 5.49094 5.53889 5.61845 5.78740 5.83234 5.90270 5.96727 6.01732 6.28888 6.34919 6.55828 6.70985 6.74603 6.87776 7.09343 7.26817 7.44190 7.81821 8.13280 8.44724 8.51244 8.78002 9.25289 10.78057 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026938 B = 0.003571 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.158933 B = 7839.263591 C = 8035.526629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.188 3.812 4 H 0.049 0.951 5 C -0.521 4.521 6 H 0.087 0.913 7 C 0.083 3.917 8 N -0.879 5.879 9 Si 0.869 3.131 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.259 1.259 13 O -0.340 6.340 14 C 0.449 3.551 15 O -0.523 6.523 16 C 0.141 3.859 17 N -0.733 5.733 18 C 0.727 3.273 19 O -0.589 6.589 20 N -0.638 5.638 21 C 0.095 3.905 22 C -0.129 4.129 23 C -0.135 4.135 24 C 0.125 3.875 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.271 0.729 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.407 0.593 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.747 7.562 6.002 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.136 3.864 4 H 0.067 0.933 5 C -0.558 4.558 6 H 0.105 0.895 7 C -0.122 4.122 8 N -0.515 5.515 9 Si 0.695 3.305 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.184 1.184 13 O -0.254 6.254 14 C 0.292 3.708 15 O -0.414 6.414 16 C 0.016 3.984 17 N -0.393 5.393 18 C 0.429 3.571 19 O -0.467 6.467 20 N -0.377 5.377 21 C -0.028 4.028 22 C -0.167 4.167 23 C -0.173 4.173 24 C 0.002 3.998 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.245 0.755 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.217 7.543 6.352 22.493 hybrid contribution -0.651 0.072 -1.501 1.638 sum -20.868 7.615 4.851 22.738 Atomic orbital electron populations 1.21925 0.97499 0.99875 1.01419 1.22105 0.93572 0.98785 1.02529 1.21109 0.96204 0.88866 0.80252 0.93323 1.20805 0.87790 1.51370 0.95807 0.89526 1.24917 0.94981 0.93659 0.98631 1.69852 1.09522 1.47398 1.24750 0.86959 0.81227 0.79824 0.82469 1.19603 1.20682 1.18380 1.86672 1.33182 1.61867 1.43711 1.23237 0.81328 0.77018 0.89186 1.90576 1.55195 1.59171 1.36488 1.20512 0.84745 0.98757 0.94423 1.44806 1.20734 1.57930 1.15825 1.15227 0.79590 0.78477 0.83847 1.90942 1.65310 1.65883 1.24532 1.47518 1.18170 1.57646 1.14399 1.22051 0.92900 1.00885 0.86976 1.22602 0.96485 0.98321 0.99319 1.22817 0.99649 0.98004 0.96819 1.22076 0.93326 0.93364 0.91055 0.93944 0.94003 0.92782 0.91786 0.90933 0.91886 0.87578 0.87405 0.75534 0.91337 0.91375 0.90385 0.89885 0.89655 0.90471 0.91624 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.57 37.16 0.32 -2.47 16 2 C -0.13 -2.81 5.63 -26.73 -0.15 -2.96 16 3 C 0.19 4.54 1.90 -27.88 -0.05 4.49 16 4 H 0.05 1.22 4.31 -51.92 -0.22 1.00 16 5 C -0.52 -14.46 9.25 -34.44 -0.32 -14.77 16 6 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 7 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 8 N -0.88 -25.80 13.96 55.43 0.77 -25.02 16 9 Si 0.87 20.93 26.99 -169.99 -4.59 16.34 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.26 -6.04 6.82 56.52 0.39 -5.65 16 13 O -0.34 -7.48 9.81 -39.27 -0.39 -7.87 16 14 C 0.45 8.46 6.51 36.00 0.23 8.70 16 15 O -0.52 -10.45 12.81 -18.75 -0.24 -10.69 16 16 C 0.14 2.16 6.26 -5.20 -0.03 2.13 16 17 N -0.73 -10.46 5.49 -66.42 -0.36 -10.82 16 18 C 0.73 10.73 8.49 -86.92 -0.74 10.00 16 19 O -0.59 -10.61 16.60 5.28 0.09 -10.53 16 20 N -0.64 -7.23 3.33 -176.23 -0.59 -7.82 16 21 C 0.10 0.80 6.14 -3.07 -0.02 0.78 16 22 C -0.13 -0.74 6.95 -24.90 -0.17 -0.91 16 23 C -0.13 -0.80 7.08 -24.57 -0.17 -0.97 16 24 C 0.12 1.12 6.91 -2.52 -0.02 1.10 16 25 H 0.04 0.77 6.05 -51.93 -0.31 0.46 16 26 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.05 1.04 7.83 -51.93 -0.41 0.64 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.41 5.50 6.43 -40.82 -0.26 5.24 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.79 8.03 -51.93 -0.42 0.37 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -32.46 335.90 -7.73 -40.19 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.27 Total: 3.83 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -1.22 Total: 7.33 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.18 Total: -43.67 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.54 Total: -29.09 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.59 Total: 16.34 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.46 -7.73 -40.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344578352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.030 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds