Wall clock time and date at job start Tue Mar 31 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46827 * 2 1 4 4 H 1.09007 * 109.46903 * 305.58385 * 3 2 1 5 5 C 1.50702 * 109.47133 * 185.59075 * 3 2 1 6 6 H 1.08000 * 119.99593 * 274.99404 * 5 3 2 7 7 C 1.37881 * 120.00188 * 94.98729 * 5 3 2 8 8 N 1.31513 * 119.99687 * 184.83822 * 7 5 3 9 9 Si 1.86794 * 120.00115 * 4.84413 * 7 5 3 10 10 H 1.48506 * 109.47231 * 84.86299 * 9 7 5 11 11 H 1.48496 * 109.47318 * 204.86520 * 9 7 5 12 12 H 1.48501 * 109.47379 * 324.86718 * 9 7 5 13 13 O 1.45191 * 109.47422 * 65.58765 * 3 2 1 14 14 C 1.34235 * 117.00168 * 269.99917 * 13 3 2 15 15 O 1.20827 * 119.99857 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00357 * 179.97438 * 14 13 3 17 17 N 1.46495 * 109.47265 * 180.02562 * 16 14 13 18 18 C 1.34779 * 120.00140 * 180.02562 * 17 16 14 19 19 O 1.21593 * 119.99835 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00304 * 179.97438 * 18 17 16 21 21 C 1.47023 * 125.64586 * 359.69735 * 20 18 17 22 22 C 1.54319 * 107.27402 * 180.96694 * 21 20 18 23 23 C 1.55153 * 102.86338 * 22.52187 * 22 21 20 24 24 C 1.47427 * 125.64848 * 179.97438 * 20 18 17 25 25 H 1.09001 * 109.47131 * 299.99945 * 1 2 3 26 26 H 1.09007 * 109.46616 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47225 * 60.00388 * 1 2 3 28 28 H 1.09004 * 109.47353 * 119.99183 * 2 1 3 29 29 H 1.09001 * 109.47596 * 239.99800 * 2 1 3 30 30 H 0.97001 * 120.00050 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47495 * 300.00392 * 16 14 13 32 32 H 1.09006 * 109.47024 * 59.99984 * 16 14 13 33 33 H 0.96997 * 120.00054 * 359.97438 * 17 16 14 34 34 H 1.09002 * 109.87976 * 300.51226 * 21 20 18 35 35 H 1.08998 * 109.88093 * 61.67239 * 21 20 18 36 36 H 1.09000 * 110.91662 * 264.10781 * 22 21 20 37 37 H 1.08993 * 110.58766 * 140.78728 * 22 21 20 38 38 H 1.08997 * 111.00457 * 206.22711 * 23 22 21 39 39 H 1.08999 * 111.00100 * 82.37776 * 23 22 21 40 40 H 1.08995 * 110.36970 * 274.67787 * 24 20 18 41 41 H 1.08996 * 110.36616 * 36.89559 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5972 1.9844 -0.8358 5 6 3.5406 1.4449 -0.1384 6 1 4.1637 1.3341 0.7367 7 6 4.1180 1.5883 -1.3823 8 7 5.4230 1.4952 -1.5160 9 14 3.0467 1.9150 -2.8772 10 1 2.7807 3.3720 -2.9867 11 1 3.7470 1.4464 -4.1000 12 1 1.7607 1.1866 -2.7335 13 8 1.6678 2.0875 1.2465 14 6 0.4848 2.7212 1.2754 15 8 -0.2167 2.7360 0.2917 16 6 0.0312 3.4131 2.5349 17 7 -1.2816 4.0235 2.3110 18 6 -1.8881 4.7012 3.3056 19 8 -1.3455 4.8064 4.3886 20 7 -3.0956 5.2633 3.0995 21 6 -3.8577 5.2199 1.8429 22 6 -5.1609 6.0147 2.0697 23 6 -4.7967 6.9437 3.2577 24 6 -3.8685 6.0283 4.0950 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5137 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 5.8292 1.5957 -2.3911 31 1 -0.0399 2.6857 3.3436 32 1 0.7508 4.1864 2.8039 33 1 -1.7139 3.9406 1.4467 34 1 -3.2772 5.6769 1.0414 35 1 -4.0951 4.1869 1.5889 36 1 -5.9811 5.3488 2.3381 37 1 -5.4116 6.6000 1.1851 38 1 -5.6859 7.2208 3.8239 39 1 -4.2638 7.8294 2.9119 40 1 -4.4592 5.3548 4.7158 41 1 -3.2011 6.6271 4.7147 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344578352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:24 Heat of formation + Delta-G solvation = -140.716177 kcal Electronic energy + Delta-G solvation = -22798.529636 eV Core-core repulsion = 19291.615942 eV Total energy + Delta-G solvation = -3506.913694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.82091 -41.10609 -38.63542 -37.86479 -35.65910 -35.38258 -33.96194 -32.66810 -30.22554 -29.86528 -28.78458 -25.05928 -24.45636 -22.78200 -22.03158 -21.43990 -21.18189 -19.80345 -19.09229 -18.46186 -17.82579 -17.47450 -17.12432 -17.02598 -16.27821 -15.94001 -15.45934 -14.89991 -14.84787 -14.57509 -14.43255 -14.15950 -13.99944 -13.89450 -13.67411 -13.45830 -13.24338 -13.12325 -12.92908 -12.58175 -12.20856 -12.14116 -12.00841 -11.88107 -11.59274 -11.57021 -11.51147 -11.31483 -11.07769 -10.81972 -10.47022 -9.60996 -8.47675 -6.57968 1.13527 1.17919 1.28265 1.29144 1.39494 1.96769 2.00374 2.19307 2.87435 2.90567 3.64906 3.67687 3.75529 4.07293 4.15820 4.20563 4.24848 4.28385 4.31053 4.36822 4.48750 4.57235 4.63248 4.86130 4.92596 4.99372 5.00720 5.06757 5.07121 5.12131 5.14526 5.23850 5.34143 5.36282 5.46111 5.60729 5.90456 6.12846 6.51631 6.74226 6.82471 7.09655 7.35966 8.67775 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026938 B = 0.003571 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.158933 B = 7839.263591 C = 8035.526629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 C 0.192 3.808 4 H 0.043 0.957 5 C -0.535 4.535 6 H 0.046 0.954 7 C 0.034 3.966 8 N -0.924 5.924 9 Si 0.930 3.070 10 H -0.269 1.269 11 H -0.269 1.269 12 H -0.245 1.245 13 O -0.354 6.354 14 C 0.452 3.548 15 O -0.530 6.530 16 C 0.152 3.848 17 N -0.729 5.729 18 C 0.721 3.279 19 O -0.628 6.628 20 N -0.637 5.637 21 C 0.086 3.914 22 C -0.121 4.121 23 C -0.124 4.124 24 C 0.115 3.885 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.276 0.724 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.412 0.588 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.018 8.027 5.216 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C 0.139 3.861 4 H 0.060 0.940 5 C -0.572 4.572 6 H 0.064 0.936 7 C -0.167 4.167 8 N -0.562 5.562 9 Si 0.752 3.248 10 H -0.194 1.194 11 H -0.194 1.194 12 H -0.168 1.168 13 O -0.270 6.270 14 C 0.296 3.704 15 O -0.421 6.421 16 C 0.026 3.974 17 N -0.389 5.389 18 C 0.423 3.577 19 O -0.509 6.509 20 N -0.375 5.375 21 C -0.036 4.036 22 C -0.158 4.158 23 C -0.162 4.162 24 C -0.008 4.008 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.250 0.750 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.544 8.020 5.556 25.486 hybrid contribution 0.350 -0.040 -1.148 1.201 sum -23.195 7.981 4.408 24.922 Atomic orbital electron populations 1.21818 0.94933 1.01809 1.01128 1.22032 0.95782 0.96638 1.02491 1.20904 0.93854 0.90584 0.80790 0.93958 1.20967 0.89809 1.51672 0.94749 0.93587 1.25703 0.96146 0.93253 1.01622 1.69968 1.11399 1.48920 1.25876 0.85994 0.80050 0.79808 0.78909 1.19369 1.19412 1.16810 1.86611 1.35141 1.62684 1.42536 1.23725 0.80109 0.76363 0.90207 1.90565 1.55106 1.59303 1.37164 1.20436 0.85448 0.98897 0.92577 1.44701 1.20247 1.57919 1.16036 1.15388 0.80471 0.78601 0.83240 1.90909 1.66656 1.67388 1.25964 1.47678 1.17204 1.56544 1.16106 1.22311 0.93920 1.01793 0.85591 1.22625 0.95163 0.98180 0.99865 1.22805 0.99676 0.97174 0.96549 1.22320 0.93389 0.93766 0.91288 0.93852 0.91000 0.93356 0.91646 0.91273 0.91446 0.86236 0.86919 0.74984 0.91355 0.90991 0.89129 0.88135 0.87221 0.90586 0.90952 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 8.57 71.98 0.62 -4.22 16 2 C -0.13 -5.46 5.63 30.59 0.17 -5.29 16 3 C 0.19 9.22 1.90 29.85 0.06 9.28 16 4 H 0.04 2.08 4.31 -2.38 -0.01 2.07 16 5 C -0.53 -30.50 9.25 25.60 0.24 -30.26 16 6 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 7 C 0.03 1.92 5.47 84.66 0.46 2.38 16 8 N -0.92 -55.55 13.96 21.45 0.30 -55.25 16 9 Si 0.93 42.86 26.99 68.60 1.85 44.71 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.24 -10.60 6.82 99.48 0.68 -9.92 16 13 O -0.35 -15.59 9.81 -51.46 -0.51 -16.10 16 14 C 0.45 16.57 6.51 71.23 0.46 17.03 16 15 O -0.53 -20.32 12.81 21.96 0.28 -20.04 16 16 C 0.15 4.51 6.26 85.63 0.54 5.05 16 17 N -0.73 -19.95 5.49 -482.30 -2.65 -22.59 16 18 C 0.72 20.76 8.49 179.05 1.52 22.28 16 19 O -0.63 -22.60 16.60 -4.01 -0.07 -22.66 16 20 N -0.64 -13.60 3.33 -829.72 -2.76 -16.36 16 21 C 0.09 1.25 6.14 86.73 0.53 1.78 16 22 C -0.12 -0.97 6.95 31.78 0.22 -0.75 16 23 C -0.12 -1.11 7.08 31.99 0.23 -0.89 16 24 C 0.11 1.89 6.91 86.86 0.60 2.49 16 25 H 0.04 1.47 6.05 -2.39 -0.01 1.46 16 26 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.05 1.72 7.83 -2.39 -0.02 1.71 16 28 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 29 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.12 3.27 8.14 -2.39 -0.02 3.26 16 32 H 0.11 3.29 8.14 -2.38 -0.02 3.27 16 33 H 0.41 10.49 6.43 -92.71 -0.60 9.90 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.25 8.03 -2.39 -0.02 1.23 16 Total: -1.00 -71.31 335.90 2.51 -68.81 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.41 Total: 20.60 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: 5.65 Total: 18.89 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -5.11 Total: -94.20 kcal Atomic # 8 Polarization: -58.51 SS G_CDS: -0.29 Total: -58.80 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.85 Total: 44.71 kcal Total: -71.31 2.51 -68.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344578352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.910 kcal (2) G-P(sol) polarization free energy of solvation -71.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds