Wall clock time and date at job start Tue Mar 31 2020 05:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 C 1.52999 * 109.47522 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46992 * 180.02562 * 10 9 7 12 12 C 1.34786 * 119.99733 * 180.02562 * 11 10 9 13 13 O 1.21343 * 119.99744 * 359.97438 * 12 11 10 14 14 C 1.49452 * 119.99833 * 180.02562 * 12 11 10 15 15 O 1.21343 * 119.99951 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99625 * 179.97438 * 14 12 11 17 17 C 1.46497 * 119.99525 * 179.97438 * 16 14 12 18 18 C 1.52999 * 109.46992 * 179.97438 * 17 16 14 19 19 H 1.08996 * 109.48146 * 60.02346 * 18 17 16 20 20 C 1.53091 * 109.48103 * 180.02562 * 18 17 16 21 21 C 1.53184 * 109.16412 * 177.59189 * 20 18 17 22 22 C 1.53178 * 109.03670 * 303.01913 * 21 20 18 23 23 C 1.53096 * 109.16159 * 56.97564 * 22 21 20 24 24 O 1.42901 * 109.41851 * 302.39239 * 23 22 21 25 25 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 27 27 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 28 28 H 1.08995 * 109.46838 * 300.00336 * 10 9 7 29 29 H 1.09001 * 109.47054 * 60.00311 * 10 9 7 30 30 H 0.97000 * 120.00583 * 0.02562 * 11 10 9 31 31 H 0.97000 * 119.99894 * 359.97438 * 16 14 12 32 32 H 1.08995 * 109.47421 * 299.99467 * 17 16 14 33 33 H 1.09001 * 109.47150 * 59.99857 * 17 16 14 34 34 H 1.09002 * 109.52164 * 297.49096 * 20 18 17 35 35 H 1.08996 * 109.52574 * 57.68739 * 20 18 17 36 36 H 1.08997 * 109.54504 * 183.14763 * 21 20 18 37 37 H 1.09005 * 109.54186 * 62.88242 * 21 20 18 38 38 H 1.08996 * 109.51804 * 297.07441 * 22 21 20 39 39 H 1.08996 * 109.57523 * 176.91746 * 22 21 20 40 40 H 1.09004 * 109.47435 * 182.40947 * 23 22 21 41 41 H 1.08999 * 109.48944 * 62.38786 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 6 4.0215 -2.6365 -0.0183 11 7 5.4865 -2.6364 -0.0239 12 6 6.1604 -3.8037 -0.0304 13 8 5.5537 -4.8545 -0.0313 14 6 7.6549 -3.8036 -0.0355 15 8 8.2616 -2.7527 -0.0342 16 7 8.3288 -4.9708 -0.0416 17 6 9.7937 -4.9707 -0.0471 18 6 10.3038 -6.4132 -0.0527 19 1 9.9375 -6.9248 -0.9427 20 6 11.8347 -6.4134 -0.0579 21 6 12.3375 -7.8593 -0.0026 22 6 11.7603 -8.5418 1.2413 23 6 10.2322 -8.4593 1.1963 24 8 9.8326 -7.0898 1.1146 25 1 -0.4850 0.8400 0.0004 26 1 3.8711 -0.6780 -0.9023 27 1 3.8785 -0.6824 0.8776 28 1 3.6619 -3.1528 0.8717 29 1 3.6545 -3.1478 -0.9083 30 1 5.9715 -1.7964 -0.0228 31 1 7.8437 -5.8109 -0.0422 32 1 10.1537 -4.4543 -0.9369 33 1 10.1604 -4.4595 0.8430 34 1 12.1959 -5.9368 -0.9692 35 1 12.2020 -5.8667 0.8106 36 1 13.4262 -7.8650 0.0504 37 1 12.0118 -8.3930 -0.8956 38 1 12.1261 -8.0380 2.1359 39 1 12.0683 -9.5872 1.2603 40 1 9.8174 -8.9058 2.1001 41 1 9.8645 -8.9981 0.3230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345304522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:48 Heat of formation + Delta-G solvation = -136.664935 kcal Electronic energy + Delta-G solvation = -21812.266890 eV Core-core repulsion = 18305.528871 eV Total energy + Delta-G solvation = -3506.738019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.55254 -39.78601 -38.26490 -35.62545 -34.83807 -34.10298 -32.79984 -31.92586 -30.26093 -27.84670 -25.77521 -24.66086 -23.42900 -22.22608 -20.94005 -20.81054 -20.05392 -18.36427 -17.04925 -16.95718 -16.56943 -16.36755 -15.79836 -15.57246 -15.04064 -14.94087 -14.63553 -14.47816 -14.16494 -13.78764 -13.41022 -13.32798 -13.15829 -12.79995 -12.60041 -12.57586 -11.79376 -11.57701 -11.56336 -11.46360 -11.22957 -11.22525 -10.79883 -10.42437 -10.28368 -9.95300 -9.92797 -9.43206 -9.36877 -9.27677 -8.73931 -8.59555 -6.10951 -4.11542 1.59312 2.49239 3.23972 3.27948 3.35786 3.37941 3.41460 3.83549 4.18714 4.33371 4.35208 4.39174 4.49415 4.64598 4.67060 4.74088 4.95205 5.09606 5.18972 5.22173 5.22687 5.31123 5.42965 5.45287 5.54726 5.60895 5.79277 5.99748 6.08189 6.13106 6.49946 6.54910 6.76245 6.98573 7.13623 7.20690 7.60957 7.64378 7.89692 8.25504 8.43512 8.92427 9.49060 11.01793 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.046676 B = 0.002500 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.733617 B =11197.901829 C =11634.838112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.287 1.287 7 C -0.523 4.523 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.127 3.873 11 N -0.691 5.691 12 C 0.499 3.501 13 O -0.528 6.528 14 C 0.508 3.492 15 O -0.524 6.524 16 N -0.699 5.699 17 C 0.127 3.873 18 C 0.077 3.923 19 H 0.068 0.932 20 C -0.148 4.148 21 C -0.122 4.122 22 C -0.158 4.158 23 C 0.060 3.940 24 O -0.374 6.374 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.409 0.591 31 H 0.416 0.584 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.704 -15.827 -0.239 31.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.212 1.212 7 C -0.562 4.562 8 H 0.095 0.905 9 C -0.062 4.062 10 C 0.006 3.994 11 N -0.343 5.343 12 C 0.279 3.721 13 O -0.405 6.405 14 C 0.289 3.711 15 O -0.400 6.400 16 N -0.353 5.353 17 C 0.003 3.997 18 C 0.019 3.981 19 H 0.086 0.914 20 C -0.186 4.186 21 C -0.159 4.159 22 C -0.196 4.196 23 C -0.016 4.016 24 O -0.293 6.293 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.244 0.756 31 H 0.253 0.747 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 26.403 -15.599 -0.101 30.666 hybrid contribution 0.573 0.734 -0.142 0.942 sum 26.976 -14.865 -0.243 30.801 Atomic orbital electron populations 1.69901 1.06279 1.27101 1.50298 1.24990 0.94782 0.99186 0.94289 0.86760 0.80335 0.83464 0.78612 1.20165 1.18938 1.21250 1.20880 0.88456 0.94948 1.51895 0.90536 1.19828 0.98085 0.91017 0.97237 1.21706 0.74778 1.00796 1.02160 1.46199 1.09476 1.08023 1.70561 1.19948 0.87682 0.85222 0.79285 1.90745 1.69658 1.31022 1.49122 1.20413 0.89035 0.84200 0.77426 1.90746 1.70081 1.31071 1.48116 1.45611 1.07004 1.09288 1.73354 1.21493 0.79626 0.94921 1.03633 1.22354 0.93913 0.92605 0.89198 0.91411 1.22132 0.94951 0.97884 1.03663 1.21577 1.00880 0.95310 0.98171 1.22210 0.96775 1.01495 0.99112 1.22602 0.93911 0.82796 1.02335 1.88005 1.74743 1.23829 1.42745 0.92522 0.95719 0.96138 0.91276 0.91257 0.75587 0.74696 0.89477 0.90147 0.90332 0.90462 0.91180 0.91671 0.90918 0.90801 0.88574 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.62 9.66 -34.44 -0.33 -14.96 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.02 -0.55 4.15 -27.88 -0.12 -0.67 16 10 C 0.13 2.58 5.61 -4.04 -0.02 2.56 16 11 N -0.69 -12.15 5.55 -60.73 -0.34 -12.49 16 12 C 0.50 8.49 7.89 -11.58 -0.09 8.40 16 13 O -0.53 -10.01 16.48 5.50 0.09 -9.92 16 14 C 0.51 7.55 7.89 -11.58 -0.09 7.45 16 15 O -0.52 -8.63 16.48 5.50 0.09 -8.54 16 16 N -0.70 -8.22 5.44 -60.73 -0.33 -8.55 16 17 C 0.13 1.16 5.37 -4.04 -0.02 1.14 16 18 C 0.08 0.57 2.73 -26.68 -0.07 0.50 16 19 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 20 C -0.15 -0.83 5.42 -26.59 -0.14 -0.98 16 21 C -0.12 -0.59 6.03 -26.54 -0.16 -0.75 16 22 C -0.16 -0.82 6.14 -26.59 -0.16 -0.98 16 23 C 0.06 0.39 6.84 37.21 0.25 0.64 16 24 O -0.37 -3.38 10.15 -35.23 -0.36 -3.73 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 27 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.41 6.66 7.94 -40.82 -0.32 6.33 16 31 H 0.42 4.71 7.82 -40.82 -0.32 4.39 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -32.59 342.15 -7.14 -39.73 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.49 Total: 4.02 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.06 Total: 4.26 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.11 Total: -47.57 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.18 Total: -22.19 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.59 -7.14 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345304522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.936 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds