Wall clock time and date at job start Tue Mar 31 2020 05:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 C 1.52999 * 109.47522 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46992 * 180.02562 * 10 9 7 12 12 C 1.34786 * 119.99733 * 180.02562 * 11 10 9 13 13 O 1.21343 * 119.99744 * 359.97438 * 12 11 10 14 14 C 1.49452 * 119.99833 * 180.02562 * 12 11 10 15 15 O 1.21343 * 119.99951 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99625 * 179.97438 * 14 12 11 17 17 C 1.46497 * 119.99525 * 179.97438 * 16 14 12 18 18 C 1.52999 * 109.46992 * 179.97438 * 17 16 14 19 19 H 1.08996 * 109.48146 * 60.02346 * 18 17 16 20 20 C 1.53091 * 109.48103 * 180.02562 * 18 17 16 21 21 C 1.53184 * 109.16412 * 177.59189 * 20 18 17 22 22 C 1.53178 * 109.03670 * 303.01913 * 21 20 18 23 23 C 1.53096 * 109.16159 * 56.97564 * 22 21 20 24 24 O 1.42901 * 109.41851 * 302.39239 * 23 22 21 25 25 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 27 27 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 28 28 H 1.08995 * 109.46838 * 300.00336 * 10 9 7 29 29 H 1.09001 * 109.47054 * 60.00311 * 10 9 7 30 30 H 0.97000 * 120.00583 * 0.02562 * 11 10 9 31 31 H 0.97000 * 119.99894 * 359.97438 * 16 14 12 32 32 H 1.08995 * 109.47421 * 299.99467 * 17 16 14 33 33 H 1.09001 * 109.47150 * 59.99857 * 17 16 14 34 34 H 1.09002 * 109.52164 * 297.49096 * 20 18 17 35 35 H 1.08996 * 109.52574 * 57.68739 * 20 18 17 36 36 H 1.08997 * 109.54504 * 183.14763 * 21 20 18 37 37 H 1.09005 * 109.54186 * 62.88242 * 21 20 18 38 38 H 1.08996 * 109.51804 * 297.07441 * 22 21 20 39 39 H 1.08996 * 109.57523 * 176.91746 * 22 21 20 40 40 H 1.09004 * 109.47435 * 182.40947 * 23 22 21 41 41 H 1.08999 * 109.48944 * 62.38786 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 6 4.0215 -2.6365 -0.0183 11 7 5.4865 -2.6364 -0.0239 12 6 6.1604 -3.8037 -0.0304 13 8 5.5537 -4.8545 -0.0313 14 6 7.6549 -3.8036 -0.0355 15 8 8.2616 -2.7527 -0.0342 16 7 8.3288 -4.9708 -0.0416 17 6 9.7937 -4.9707 -0.0471 18 6 10.3038 -6.4132 -0.0527 19 1 9.9375 -6.9248 -0.9427 20 6 11.8347 -6.4134 -0.0579 21 6 12.3375 -7.8593 -0.0026 22 6 11.7603 -8.5418 1.2413 23 6 10.2322 -8.4593 1.1963 24 8 9.8326 -7.0898 1.1146 25 1 -0.4850 0.8400 0.0004 26 1 3.8711 -0.6780 -0.9023 27 1 3.8785 -0.6824 0.8776 28 1 3.6619 -3.1528 0.8717 29 1 3.6545 -3.1478 -0.9083 30 1 5.9715 -1.7964 -0.0228 31 1 7.8437 -5.8109 -0.0422 32 1 10.1537 -4.4543 -0.9369 33 1 10.1604 -4.4595 0.8430 34 1 12.1959 -5.9368 -0.9692 35 1 12.2020 -5.8667 0.8106 36 1 13.4262 -7.8650 0.0504 37 1 12.0118 -8.3930 -0.8956 38 1 12.1261 -8.0380 2.1359 39 1 12.0683 -9.5872 1.2603 40 1 9.8174 -8.9058 2.1001 41 1 9.8645 -8.9981 0.3230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345304522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:47 Heat of formation + Delta-G solvation = -161.834694 kcal Electronic energy + Delta-G solvation = -21813.358333 eV Core-core repulsion = 18305.528871 eV Total energy + Delta-G solvation = -3507.829462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.73571 -40.47452 -39.52524 -37.00474 -36.05382 -34.78770 -34.57861 -32.59968 -32.12193 -28.68393 -27.30639 -25.44342 -24.48183 -23.07225 -22.62853 -21.63811 -21.01329 -19.63257 -19.01865 -17.89073 -17.61538 -17.02619 -16.97187 -16.66664 -16.19635 -16.18062 -15.83346 -15.45189 -15.33962 -14.98467 -14.76490 -14.57968 -14.08565 -13.80511 -13.56797 -13.39254 -13.17661 -13.06595 -12.85641 -12.23942 -12.21763 -12.19289 -11.99772 -11.77835 -11.67019 -11.51103 -11.27420 -10.78947 -10.75474 -10.41263 -10.36765 -10.23202 -8.30096 -6.36917 0.31673 1.30246 1.40022 1.41485 1.52880 2.11620 2.36609 2.59077 2.76010 3.05000 3.42773 3.63576 3.89638 3.93233 4.03165 4.12142 4.23798 4.26603 4.38899 4.46916 4.53102 4.67127 4.72360 4.73876 4.85487 4.91854 4.98927 5.05917 5.11634 5.15399 5.20110 5.29647 5.37185 5.39785 5.58742 5.89830 6.20624 6.24001 6.34459 6.67587 6.73557 6.92416 7.27605 8.86134 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.046676 B = 0.002500 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.733617 B =11197.901829 C =11634.838112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.007 3.993 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.241 1.241 6 H -0.285 1.285 7 C -0.536 4.536 8 H 0.036 0.964 9 C -0.017 4.017 10 C 0.142 3.858 11 N -0.688 5.688 12 C 0.500 3.500 13 O -0.550 6.550 14 C 0.515 3.485 15 O -0.541 6.541 16 N -0.684 5.684 17 C 0.123 3.877 18 C 0.080 3.920 19 H 0.078 0.922 20 C -0.145 4.145 21 C -0.121 4.121 22 C -0.156 4.156 23 C 0.054 3.946 24 O -0.400 6.400 25 H 0.268 0.732 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.418 0.582 31 H 0.419 0.581 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.643 -15.578 -0.642 33.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.164 1.164 6 H -0.211 1.211 7 C -0.574 4.574 8 H 0.054 0.946 9 C -0.055 4.055 10 C 0.019 3.981 11 N -0.339 5.339 12 C 0.281 3.719 13 O -0.428 6.428 14 C 0.295 3.705 15 O -0.418 6.418 16 N -0.337 5.337 17 C 0.001 3.999 18 C 0.022 3.978 19 H 0.095 0.905 20 C -0.184 4.184 21 C -0.159 4.159 22 C -0.193 4.193 23 C -0.022 4.022 24 O -0.320 6.320 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.255 0.745 31 H 0.256 0.744 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 29.391 -15.390 -0.504 33.180 hybrid contribution -0.373 0.506 0.000 0.629 sum 29.018 -14.884 -0.504 32.616 Atomic orbital electron populations 1.70058 1.08380 1.28383 1.51913 1.26006 0.95666 1.03629 0.93794 0.85612 0.79641 0.77820 0.79287 1.19128 1.16374 1.21117 1.21199 0.91187 0.93576 1.51467 0.94597 1.19697 0.94769 0.92853 0.98177 1.21283 0.76559 0.98986 1.01299 1.45975 1.08219 1.08893 1.70859 1.20358 0.88862 0.84491 0.78212 1.90736 1.70459 1.31729 1.49893 1.19895 0.87691 0.84870 0.78022 1.90745 1.69849 1.31678 1.49561 1.45654 1.08234 1.08375 1.71392 1.21734 0.77627 0.96569 1.03969 1.22388 0.95025 0.91280 0.89113 0.90456 1.22126 0.93477 0.98626 1.04131 1.21599 1.01431 0.94673 0.98173 1.22190 0.95765 1.02347 0.99033 1.22759 0.94926 0.81737 1.02825 1.87960 1.75417 1.25125 1.43522 0.92310 0.94538 0.94758 0.92338 0.92185 0.74531 0.74355 0.88091 0.90780 0.88904 0.91068 0.90218 0.91006 0.91715 0.89429 0.88424 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.90 13.96 21.45 0.30 -58.60 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.95 43.02 27.47 68.60 1.88 44.91 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 6 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.54 -30.40 9.66 25.60 0.25 -30.15 16 8 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 9 C -0.02 -0.77 4.15 29.85 0.12 -0.65 16 10 C 0.14 5.71 5.61 86.38 0.48 6.20 16 11 N -0.69 -23.33 5.55 -464.42 -2.58 -25.91 16 12 C 0.50 16.53 7.89 87.27 0.69 17.22 16 13 O -0.55 -20.57 16.48 -3.22 -0.05 -20.62 16 14 C 0.52 14.55 7.89 87.27 0.69 15.24 16 15 O -0.54 -16.86 16.48 -3.23 -0.05 -16.91 16 16 N -0.68 -15.08 5.44 -464.43 -2.53 -17.61 16 17 C 0.12 2.05 5.37 86.38 0.46 2.51 16 18 C 0.08 1.03 2.73 30.62 0.08 1.11 16 19 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 20 C -0.15 -1.32 5.42 30.69 0.17 -1.15 16 21 C -0.12 -0.89 6.03 30.72 0.19 -0.71 16 22 C -0.16 -1.33 6.14 30.69 0.19 -1.15 16 23 C 0.05 0.62 6.84 72.01 0.49 1.11 16 24 O -0.40 -6.73 10.15 -148.98 -1.51 -8.25 16 25 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 26 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 27 H 0.03 1.46 7.57 -2.39 -0.02 1.44 16 28 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.42 12.78 7.94 -92.71 -0.74 12.04 16 31 H 0.42 8.95 7.82 -92.71 -0.73 8.23 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -70.28 342.15 -0.74 -71.02 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.48 Total: 21.55 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 4.28 Total: 10.42 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -4.80 Total: -102.12 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -1.62 Total: -45.78 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.91 kcal Total: -70.28 -0.74 -71.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345304522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.814 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds