Wall clock time and date at job start Tue Mar 31 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00385 * 2 1 4 4 H 1.48504 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47130 * 300.00019 * 3 2 1 6 6 H 1.48498 * 109.47232 * 60.00090 * 3 2 1 7 7 C 1.37885 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99589 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46702 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46859 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47232 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00135 * 180.02562 * 12 11 10 14 14 O 1.21347 * 120.00395 * 0.02562 * 13 12 11 15 15 C 1.49458 * 120.00118 * 179.97438 * 13 12 11 16 16 O 1.21352 * 119.99625 * 6.27190 * 15 13 12 17 17 N 1.34773 * 120.00240 * 186.27677 * 15 13 12 18 18 C 1.44462 * 118.51035 * 358.72969 * 17 15 13 19 19 C 1.54873 * 109.32921 * 268.95887 * 18 17 15 20 20 C 1.47691 * 109.67741 * 290.10735 * 19 18 17 21 21 O 1.42558 * 113.66911 * 60.80615 * 20 19 18 22 22 C 1.40526 * 113.53945 * 272.23965 * 21 20 19 23 23 C 1.48182 * 118.51080 * 178.75711 * 17 15 13 24 24 H 0.97003 * 119.99448 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47082 * 60.00560 * 9 7 2 26 26 H 1.08993 * 109.47223 * 300.00126 * 9 7 2 27 27 H 1.08998 * 109.46814 * 60.00494 * 10 9 7 28 28 H 1.08993 * 109.47464 * 300.00076 * 10 9 7 29 29 H 1.09000 * 109.47699 * 60.00461 * 11 10 9 30 30 H 1.09001 * 109.47265 * 300.00042 * 11 10 9 31 31 H 0.97002 * 119.99548 * 359.97438 * 12 11 10 32 32 H 1.09005 * 109.49226 * 149.00405 * 18 17 15 33 33 H 1.08997 * 109.49334 * 28.91331 * 18 17 15 34 34 H 1.09002 * 109.43621 * 170.04260 * 19 18 17 35 35 H 1.08998 * 109.40037 * 50.14737 * 19 18 17 36 36 H 1.09004 * 108.64261 * 299.72293 * 20 19 18 37 37 H 1.09000 * 108.64421 * 181.88883 * 20 19 18 38 38 H 1.08995 * 109.40286 * 215.41184 * 22 21 20 39 39 H 1.09001 * 109.40285 * 335.16570 * 22 21 20 40 40 H 1.08999 * 109.22909 * 259.05291 * 23 17 15 41 41 H 1.08994 * 109.23441 * 18.47702 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4800 -4.9871 -0.0012 12 7 2.4319 -6.1007 -0.0018 13 6 1.9826 -7.3713 -0.0019 14 8 0.7896 -7.5931 -0.0020 15 6 2.9537 -8.5074 -0.0031 16 8 4.1422 -8.2898 0.1108 17 7 2.5097 -9.7735 -0.1308 18 6 1.0865 -9.9976 -0.2365 19 6 0.4959 -10.2185 1.1781 20 6 0.9521 -11.5186 1.7100 21 8 2.3682 -11.6187 1.8400 22 6 3.0079 -12.0745 0.6748 23 6 3.5034 -10.8724 -0.1559 24 1 -0.4849 0.8401 -0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8723 -3.6048 0.8877 28 1 2.8711 -3.6041 -0.8922 29 1 0.8524 -5.0448 -0.8905 30 1 0.8543 -5.0450 0.8895 31 1 3.3856 -5.9235 -0.0029 32 1 0.9017 -10.8798 -0.8496 33 1 0.6146 -9.1292 -0.6961 34 1 -0.5926 -10.2113 1.1219 35 1 0.8303 -9.4188 1.8390 36 1 0.6066 -12.3085 1.0430 37 1 0.5005 -11.6719 2.6901 38 1 3.8574 -12.7000 0.9491 39 1 2.3055 -12.6599 0.0814 40 1 3.6622 -11.1894 -1.1867 41 1 4.4455 -10.5141 0.2588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346116291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:54 Heat of formation + Delta-G solvation = -106.444935 kcal Electronic energy + Delta-G solvation = -22564.830218 eV Core-core repulsion = 19059.402637 eV Total energy + Delta-G solvation = -3505.427581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15176 -39.37829 -38.28789 -36.25058 -35.12587 -33.32747 -33.28137 -31.26046 -29.53288 -27.20649 -26.64439 -24.96419 -23.07953 -22.14787 -21.48932 -20.79494 -19.62068 -17.80985 -17.49266 -16.80839 -16.49855 -16.25148 -16.04455 -15.58518 -15.35899 -14.78926 -14.49834 -14.35867 -14.13570 -13.84316 -13.48617 -13.25439 -12.89653 -12.34587 -12.24783 -12.02645 -11.87564 -11.78589 -11.44672 -11.12595 -10.93829 -10.92960 -10.77047 -10.57955 -10.01310 -9.90940 -9.62347 -9.24367 -9.11474 -9.06755 -8.81826 -8.39193 -6.03849 -4.06658 1.42124 2.26587 3.18604 3.29676 3.37204 3.39179 3.41849 3.57415 4.34399 4.43845 4.48372 4.49481 4.69748 4.74824 5.00071 5.01289 5.11505 5.26358 5.32379 5.36202 5.47639 5.56373 5.57874 5.67585 5.73781 5.96188 6.06428 6.20863 6.36528 6.52882 6.70250 6.85367 6.92253 6.94241 7.32840 7.60825 7.72104 7.72189 7.94735 8.04435 8.36067 9.00118 9.57853 11.07503 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041542 B = 0.002726 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.856289 B =10269.888969 C =10661.488862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.689 5.689 13 C 0.501 3.499 14 O -0.517 6.517 15 C 0.504 3.496 16 O -0.523 6.523 17 N -0.575 5.575 18 C 0.077 3.923 19 C -0.161 4.161 20 C 0.059 3.941 21 O -0.368 6.368 22 C 0.051 3.949 23 C 0.078 3.922 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.411 0.589 32 H 0.066 0.934 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.859 -26.006 -0.444 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.340 5.340 13 C 0.282 3.718 14 O -0.395 6.395 15 C 0.287 3.713 16 O -0.399 6.399 17 N -0.308 5.308 18 C -0.046 4.046 19 C -0.199 4.199 20 C -0.018 4.018 21 O -0.285 6.285 22 C -0.027 4.027 23 C -0.044 4.044 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.247 0.753 32 H 0.085 0.915 33 H 0.155 0.845 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.576 -25.891 -0.216 26.020 hybrid contribution 0.661 0.908 -0.229 1.146 sum 3.238 -24.983 -0.445 25.196 Atomic orbital electron populations 1.69974 1.06065 1.26608 1.50680 1.25029 0.94866 0.99344 0.95234 0.86519 0.80102 0.83683 0.77600 1.19714 1.20997 1.20984 1.21244 0.93102 0.90878 1.50811 0.92516 1.19031 0.93787 0.90797 0.97694 1.21929 0.99888 0.92967 1.01329 1.21850 0.91722 0.84716 1.02524 1.46110 1.12260 1.04981 1.70687 1.20006 0.88537 0.84527 0.78746 1.90553 1.16371 1.83345 1.49274 1.20388 0.88645 0.84505 0.77788 1.90737 1.16635 1.84362 1.48175 1.47591 1.07936 1.05185 1.70126 1.22565 0.79135 1.05390 0.97466 1.21877 1.01700 0.98744 0.97617 1.21669 0.81178 0.97033 1.01890 1.87517 1.19697 1.87076 1.34252 1.22876 0.98257 0.94431 0.87153 1.22816 0.93420 0.87524 1.00647 0.92972 0.96212 0.96192 0.92419 0.92442 0.91051 0.91053 0.75320 0.91544 0.84524 0.89163 0.90645 0.93261 0.89742 0.88486 0.92481 0.90614 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.11 1.92 5.67 -4.04 -0.02 1.89 16 12 N -0.69 -10.32 5.55 -60.73 -0.34 -10.66 16 13 C 0.50 7.43 7.73 -11.58 -0.09 7.34 16 14 O -0.52 -8.06 12.30 5.50 0.07 -7.99 16 15 C 0.50 7.07 7.69 -11.58 -0.09 6.98 16 16 O -0.52 -8.30 15.78 5.49 0.09 -8.22 16 17 N -0.57 -6.52 2.55 -172.44 -0.44 -6.96 16 18 C 0.08 0.76 5.01 -4.14 -0.02 0.74 16 19 C -0.16 -1.52 5.51 -28.31 -0.16 -1.68 16 20 C 0.06 0.48 6.04 34.59 0.21 0.69 16 21 O -0.37 -3.75 10.23 -34.10 -0.35 -4.10 16 22 C 0.05 0.37 6.49 37.84 0.25 0.62 16 23 C 0.08 0.70 6.56 -2.44 -0.02 0.68 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.41 5.74 7.96 -40.82 -0.32 5.42 16 32 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.14 1.60 4.76 -54.16 -0.26 1.34 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 36 H 0.05 0.30 7.28 -51.93 -0.38 -0.07 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.31 7.21 -51.93 -0.37 -0.06 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.10 1.03 6.99 -51.93 -0.36 0.67 16 LS Contribution 333.73 15.07 5.03 5.03 Total: -1.00 -32.17 333.73 -7.15 -39.32 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.30 Total: 1.08 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.63 Total: 1.91 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.04 Total: -43.49 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.19 Total: -20.30 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.17 -7.15 -39.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346116291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.123 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds