Wall clock time and date at job start Tue Mar 31 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00385 * 2 1 4 4 H 1.48504 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47130 * 300.00019 * 3 2 1 6 6 H 1.48498 * 109.47232 * 60.00090 * 3 2 1 7 7 C 1.37885 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99589 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46702 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46859 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47232 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00135 * 180.02562 * 12 11 10 14 14 O 1.21347 * 120.00395 * 0.02562 * 13 12 11 15 15 C 1.49458 * 120.00118 * 179.97438 * 13 12 11 16 16 O 1.21352 * 119.99625 * 6.27190 * 15 13 12 17 17 N 1.34773 * 120.00240 * 186.27677 * 15 13 12 18 18 C 1.44462 * 118.51035 * 358.72969 * 17 15 13 19 19 C 1.54873 * 109.32921 * 268.95887 * 18 17 15 20 20 C 1.47691 * 109.67741 * 290.10735 * 19 18 17 21 21 O 1.42558 * 113.66911 * 60.80615 * 20 19 18 22 22 C 1.40526 * 113.53945 * 272.23965 * 21 20 19 23 23 C 1.48182 * 118.51080 * 178.75711 * 17 15 13 24 24 H 0.97003 * 119.99448 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47082 * 60.00560 * 9 7 2 26 26 H 1.08993 * 109.47223 * 300.00126 * 9 7 2 27 27 H 1.08998 * 109.46814 * 60.00494 * 10 9 7 28 28 H 1.08993 * 109.47464 * 300.00076 * 10 9 7 29 29 H 1.09000 * 109.47699 * 60.00461 * 11 10 9 30 30 H 1.09001 * 109.47265 * 300.00042 * 11 10 9 31 31 H 0.97002 * 119.99548 * 359.97438 * 12 11 10 32 32 H 1.09005 * 109.49226 * 149.00405 * 18 17 15 33 33 H 1.08997 * 109.49334 * 28.91331 * 18 17 15 34 34 H 1.09002 * 109.43621 * 170.04260 * 19 18 17 35 35 H 1.08998 * 109.40037 * 50.14737 * 19 18 17 36 36 H 1.09004 * 108.64261 * 299.72293 * 20 19 18 37 37 H 1.09000 * 108.64421 * 181.88883 * 20 19 18 38 38 H 1.08995 * 109.40286 * 215.41184 * 22 21 20 39 39 H 1.09001 * 109.40285 * 335.16570 * 22 21 20 40 40 H 1.08999 * 109.22909 * 259.05291 * 23 17 15 41 41 H 1.08994 * 109.23441 * 18.47702 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4800 -4.9871 -0.0012 12 7 2.4319 -6.1007 -0.0018 13 6 1.9826 -7.3713 -0.0019 14 8 0.7896 -7.5931 -0.0020 15 6 2.9537 -8.5074 -0.0031 16 8 4.1422 -8.2898 0.1108 17 7 2.5097 -9.7735 -0.1308 18 6 1.0865 -9.9976 -0.2365 19 6 0.4959 -10.2185 1.1781 20 6 0.9521 -11.5186 1.7100 21 8 2.3682 -11.6187 1.8400 22 6 3.0079 -12.0745 0.6748 23 6 3.5034 -10.8724 -0.1559 24 1 -0.4849 0.8401 -0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8723 -3.6048 0.8877 28 1 2.8711 -3.6041 -0.8922 29 1 0.8524 -5.0448 -0.8905 30 1 0.8543 -5.0450 0.8895 31 1 3.3856 -5.9235 -0.0029 32 1 0.9017 -10.8798 -0.8496 33 1 0.6146 -9.1292 -0.6961 34 1 -0.5926 -10.2113 1.1219 35 1 0.8303 -9.4188 1.8390 36 1 0.6066 -12.3085 1.0430 37 1 0.5005 -11.6719 2.6901 38 1 3.8574 -12.7000 0.9491 39 1 2.3055 -12.6599 0.0814 40 1 3.6622 -11.1894 -1.1867 41 1 4.4455 -10.5141 0.2588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346116291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:54 Heat of formation + Delta-G solvation = -129.518619 kcal Electronic energy + Delta-G solvation = -22565.830768 eV Core-core repulsion = 19059.402637 eV Total energy + Delta-G solvation = -3506.428131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.17924 -40.26859 -39.34345 -37.44486 -36.35523 -35.15588 -33.98161 -33.04994 -30.33893 -28.90453 -27.37111 -26.32226 -24.58897 -22.82925 -22.53214 -22.38954 -20.80318 -18.85188 -18.58782 -18.30194 -17.62160 -17.38669 -16.98868 -16.59555 -16.50799 -16.32698 -15.96766 -15.53474 -15.16126 -14.73211 -14.48129 -14.30475 -14.17012 -13.77313 -13.64385 -13.51738 -13.06145 -12.80202 -12.72930 -12.56669 -12.39584 -12.31623 -11.86151 -11.70515 -11.59768 -11.54055 -11.21138 -10.70741 -10.55924 -10.38892 -10.22981 -9.78254 -8.20303 -6.30960 0.28573 1.23532 1.41227 1.41900 1.54846 2.04927 2.37945 2.44172 2.95430 3.13773 3.25695 3.81197 3.84678 4.00424 4.07501 4.15004 4.17790 4.34597 4.41430 4.49856 4.52090 4.65119 4.69219 4.78511 4.81928 4.91080 4.92238 5.01833 5.13983 5.17249 5.32897 5.43209 5.51567 5.70280 5.83972 5.84291 6.18085 6.24020 6.34952 6.64700 6.86046 6.88103 7.38447 8.91844 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041542 B = 0.002726 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.856289 B =10269.888969 C =10661.488862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.107 4.107 11 C 0.129 3.871 12 N -0.688 5.688 13 C 0.500 3.500 14 O -0.526 6.526 15 C 0.501 3.499 16 O -0.549 6.549 17 N -0.566 5.566 18 C 0.073 3.927 19 C -0.156 4.156 20 C 0.055 3.945 21 O -0.395 6.395 22 C 0.050 3.950 23 C 0.072 3.928 24 H 0.264 0.736 25 H -0.002 1.002 26 H -0.004 1.004 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.417 0.583 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.649 -27.656 -0.921 27.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.012 4.012 10 C -0.145 4.145 11 C 0.006 3.994 12 N -0.339 5.339 13 C 0.281 3.719 14 O -0.404 6.404 15 C 0.283 3.717 16 O -0.427 6.427 17 N -0.298 5.298 18 C -0.049 4.049 19 C -0.195 4.195 20 C -0.021 4.021 21 O -0.314 6.314 22 C -0.027 4.027 23 C -0.049 4.049 24 H 0.072 0.928 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.254 0.746 32 H 0.119 0.881 33 H 0.136 0.864 34 H 0.123 0.877 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.366 -27.589 -0.697 27.802 hybrid contribution 0.360 1.333 -0.093 1.384 sum 3.726 -26.256 -0.790 26.530 Atomic orbital electron populations 1.70100 1.07778 1.27734 1.51702 1.25972 0.95759 1.03370 0.94789 0.85400 0.79120 0.78831 0.77701 1.18534 1.20447 1.20513 1.21709 0.93676 0.92186 1.50435 0.91902 1.18923 0.94298 0.92491 0.95461 1.21643 0.98665 0.92076 1.02078 1.21470 0.91487 0.84334 1.02070 1.45936 1.12191 1.04714 1.71102 1.20266 0.88696 0.84662 0.78257 1.90570 1.16858 1.83619 1.49397 1.20197 0.87993 0.85191 0.78308 1.90723 1.17253 1.84771 1.49987 1.47773 1.09082 1.04782 1.68180 1.22624 0.78071 1.06007 0.98154 1.21850 1.02543 0.98506 0.96566 1.21758 0.80558 0.96856 1.02880 1.87498 1.20754 1.87315 1.35814 1.23066 0.99457 0.93713 0.86497 1.23090 0.92062 0.87225 1.02534 0.92760 0.98383 0.98538 0.91757 0.91501 0.91369 0.91780 0.74638 0.88125 0.86430 0.87745 0.94103 0.90348 0.89293 0.86675 0.89783 0.88059 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.33 4.97 29.85 0.15 1.48 16 10 C -0.11 -4.14 5.27 30.59 0.16 -3.98 16 11 C 0.13 4.40 5.67 86.38 0.49 4.89 16 12 N -0.69 -20.60 5.55 -464.41 -2.58 -23.18 16 13 C 0.50 14.88 7.73 87.27 0.67 15.55 16 14 O -0.53 -16.47 12.30 -3.24 -0.04 -16.51 16 15 C 0.50 13.93 7.69 87.27 0.67 14.60 16 16 O -0.55 -17.43 15.78 -3.25 -0.05 -17.48 16 17 N -0.57 -12.09 2.55 -817.83 -2.09 -14.18 16 18 C 0.07 1.31 5.01 87.40 0.44 1.75 16 19 C -0.16 -2.75 5.51 29.57 0.16 -2.58 16 20 C 0.06 0.78 6.04 70.32 0.42 1.20 16 21 O -0.40 -7.25 10.23 -144.92 -1.48 -8.74 16 22 C 0.05 0.58 6.49 72.42 0.47 1.05 16 23 C 0.07 1.14 6.56 86.49 0.57 1.70 16 24 H 0.26 14.96 8.31 -92.71 -0.77 14.18 16 25 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.42 11.56 7.96 -92.71 -0.74 10.82 16 32 H 0.10 1.14 8.10 -2.38 -0.02 1.12 16 33 H 0.12 2.64 4.76 -37.69 -0.18 2.46 16 34 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.04 1.00 7.89 -2.39 -0.02 0.98 16 36 H 0.08 0.65 7.28 -2.38 -0.02 0.63 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.53 7.21 -2.39 -0.02 0.51 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.60 6.99 -2.39 -0.02 1.58 16 Total: -1.00 -70.19 333.73 1.11 -69.08 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.13 Total: 15.18 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 4.90 Total: 5.97 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -4.38 Total: -93.53 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -1.57 Total: -42.73 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -70.19 1.11 -69.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346116291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.436 kcal (2) G-P(sol) polarization free energy of solvation -70.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds