Wall clock time and date at job start Tue Mar 31 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46944 * 2 1 4 4 C 1.53002 * 109.47075 * 119.99614 * 2 1 3 5 5 O 1.42898 * 109.47159 * 175.00141 * 4 2 1 6 6 N 1.41597 * 114.00015 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99884 * 179.97438 * 6 5 4 8 8 O 1.21343 * 120.00321 * 0.02562 * 7 6 5 9 9 C 1.49451 * 119.99815 * 179.97438 * 7 6 5 10 10 O 1.21348 * 120.00396 * 2.40979 * 9 7 6 11 11 N 1.34776 * 119.99930 * 182.41261 * 9 7 6 12 12 C 1.46494 * 120.00005 * 175.16128 * 11 9 7 13 13 C 1.53000 * 109.47397 * 184.97258 * 12 11 9 14 14 C 1.50698 * 115.55073 * 64.91193 * 13 12 11 15 15 H 1.07996 * 120.00149 * 266.86402 * 14 13 12 16 16 C 1.37876 * 119.99937 * 86.86230 * 14 13 12 17 17 N 1.31510 * 120.00057 * 180.87970 * 16 14 13 18 18 Si 1.86803 * 120.00015 * 0.87520 * 16 14 13 19 19 H 1.48502 * 109.47334 * 84.92557 * 18 16 14 20 20 H 1.48493 * 109.47135 * 204.92646 * 18 16 14 21 21 H 1.48503 * 109.46931 * 324.92667 * 18 16 14 22 22 C 1.53001 * 117.49628 * 279.24516 * 13 12 11 23 23 C 1.52998 * 117.50022 * 210.58936 * 13 12 11 24 24 H 1.08996 * 109.47007 * 300.00274 * 1 2 3 25 25 H 1.09003 * 109.47133 * 60.00222 * 1 2 3 26 26 H 1.09000 * 109.47132 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47365 * 240.00083 * 2 1 3 28 28 H 1.08998 * 109.47330 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47024 * 299.99845 * 3 2 1 30 30 H 1.09000 * 109.47022 * 59.99873 * 3 2 1 31 31 H 1.08999 * 109.46661 * 55.00075 * 4 2 1 32 32 H 1.09003 * 109.47187 * 295.00760 * 4 2 1 33 33 H 0.97002 * 119.99788 * 0.02562 * 6 5 4 34 34 H 0.97005 * 119.99836 * 354.88231 * 11 9 7 35 35 H 1.09002 * 109.47584 * 304.97081 * 12 11 9 36 36 H 1.09002 * 109.47315 * 64.97242 * 12 11 9 37 37 H 0.97002 * 120.00077 * 180.02562 * 17 16 14 38 38 H 1.09000 * 117.50059 * 0.02562 * 22 13 12 39 39 H 1.09004 * 117.50045 * 145.01680 * 22 13 12 40 40 H 1.09002 * 117.49662 * 214.98089 * 23 13 12 41 41 H 1.09007 * 117.50228 * 359.96839 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 3.4642 -0.8237 1.1921 6 7 4.0397 -1.4794 2.3074 7 6 5.3756 -1.6430 2.3775 8 8 6.0854 -1.2279 1.4850 9 6 5.9830 -2.3345 3.5549 10 8 5.2706 -2.7875 4.4266 11 7 7.3221 -2.4551 3.6486 12 6 7.9227 -3.0376 4.8511 13 6 9.4470 -2.9453 4.7559 14 6 10.0146 -1.5493 4.7504 15 1 10.2058 -1.0478 3.8133 16 6 10.2897 -0.9124 5.9419 17 7 10.7688 0.3123 5.9375 18 14 9.9819 -1.7890 7.5625 19 1 11.1584 -2.6291 7.9022 20 1 9.7643 -0.7851 8.6348 21 1 8.7782 -2.6499 7.4387 22 6 10.1679 -4.0043 3.9193 23 6 10.2654 -4.0380 5.4465 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -1.7197 1.2952 32 1 1.7516 -0.1582 2.1370 33 1 3.4723 -1.8116 3.0206 34 1 7.8880 -2.1599 2.9181 35 1 7.5799 -2.4911 5.7297 36 1 7.6266 -4.0832 4.9352 37 1 10.9627 0.7603 6.7757 38 1 9.5563 -4.7664 3.4364 39 1 11.0529 -3.6913 3.3653 40 1 11.2146 -3.7472 5.8967 41 1 9.7180 -4.8225 5.9692 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347564604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:29 Heat of formation + Delta-G solvation = -48.022348 kcal Electronic energy + Delta-G solvation = -22202.816064 eV Core-core repulsion = 18699.921876 eV Total energy + Delta-G solvation = -3502.894188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.26251 -38.65282 -37.74382 -37.10623 -35.45616 -33.74037 -32.15557 -31.88692 -27.51490 -27.45262 -26.39546 -25.50743 -23.46064 -21.78206 -20.95226 -19.98562 -19.45743 -18.64426 -17.66623 -16.44602 -16.35297 -16.26969 -15.57142 -15.19309 -15.03113 -14.58623 -14.36375 -14.10327 -13.75534 -13.37294 -13.22679 -12.85671 -12.81470 -12.53801 -12.50913 -12.14830 -11.73072 -11.54940 -11.40869 -11.19552 -11.15721 -10.97340 -10.83848 -10.52352 -10.26354 -9.76288 -9.43344 -9.26917 -9.07188 -8.73891 -8.61596 -8.55547 -6.16980 -4.22654 1.47796 1.65784 3.25906 3.35577 3.36783 3.42320 3.52141 4.24256 4.36516 4.39730 4.44361 4.62544 4.76306 4.92737 5.02547 5.07462 5.09622 5.20379 5.31233 5.48964 5.56298 5.58429 5.69529 5.88642 5.93634 5.99487 6.03109 6.07787 6.30914 6.38669 6.55822 6.64485 6.68764 6.88039 6.98255 7.03173 7.63115 7.71328 8.03661 8.29727 8.40073 8.85014 9.44685 10.94322 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.003271 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.229625 B = 8559.268110 C = 8823.147399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.151 4.151 4 C 0.032 3.968 5 O -0.138 6.138 6 N -0.576 5.576 7 C 0.520 3.480 8 O -0.497 6.497 9 C 0.515 3.485 10 O -0.538 6.538 11 N -0.659 5.659 12 C 0.152 3.848 13 C -0.020 4.020 14 C -0.494 4.494 15 H 0.081 0.919 16 C 0.080 3.920 17 N -0.892 5.892 18 Si 0.881 3.119 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.260 1.260 22 C -0.177 4.177 23 C -0.191 4.191 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.419 0.581 34 H 0.418 0.582 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.266 0.734 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.893 -3.831 -7.895 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.045 4.045 5 O -0.142 6.142 6 N -0.280 5.280 7 C 0.301 3.699 8 O -0.368 6.368 9 C 0.293 3.707 10 O -0.417 6.417 11 N -0.310 5.310 12 C 0.029 3.971 13 C -0.021 4.021 14 C -0.531 4.531 15 H 0.099 0.901 16 C -0.124 4.124 17 N -0.529 5.529 18 Si 0.709 3.291 19 H -0.201 1.201 20 H -0.221 1.221 21 H -0.184 1.184 22 C -0.214 4.214 23 C -0.229 4.229 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.260 0.740 34 H 0.255 0.745 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.655 -3.584 -7.956 19.694 hybrid contribution -0.411 -0.303 1.033 1.152 sum -18.066 -3.886 -6.923 19.734 Atomic orbital electron populations 1.21791 0.93563 1.02241 1.02624 1.21068 0.95870 0.97025 0.96782 1.21864 1.02378 0.94688 1.01873 1.23201 0.80618 1.00680 1.00025 1.90585 1.20569 1.75631 1.27375 1.47134 1.05873 1.58000 1.17024 1.20448 0.80600 0.80916 0.87948 1.90795 1.60037 1.47341 1.38670 1.19417 0.84128 0.81443 0.85687 1.90730 1.61039 1.48974 1.40952 1.45677 1.04753 1.59006 1.21519 1.21422 0.93679 0.96107 0.85861 1.19609 0.88606 0.92594 1.01315 1.20218 1.42592 0.95494 0.94764 0.90115 1.24993 0.93768 0.94483 0.99121 1.69886 1.43386 1.12150 1.27437 0.86860 0.79697 0.79365 0.83222 1.20136 1.22091 1.18438 1.22873 1.03382 1.02241 0.92920 1.22983 1.02771 1.01910 0.95230 0.92233 0.91588 0.92303 0.89834 0.91497 0.92324 0.92537 0.91831 0.91724 0.73976 0.74455 0.90742 0.92900 0.92397 0.90709 0.89150 0.88912 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.19 37.16 0.34 -0.46 16 2 C -0.09 -0.68 3.16 -90.62 -0.29 -0.96 16 3 C -0.15 -1.26 9.09 37.16 0.34 -0.92 16 4 C 0.03 0.29 5.61 37.16 0.21 0.50 16 5 O -0.14 -1.85 10.64 -29.65 -0.32 -2.17 16 6 N -0.58 -8.03 6.38 30.90 0.20 -7.83 16 7 C 0.52 8.89 8.03 -11.58 -0.09 8.80 16 8 O -0.50 -9.89 16.89 -12.68 -0.21 -10.11 16 9 C 0.51 9.27 7.88 -11.58 -0.09 9.18 16 10 O -0.54 -10.15 16.49 5.50 0.09 -10.06 16 11 N -0.66 -12.53 5.44 -60.73 -0.33 -12.86 16 12 C 0.15 3.07 5.21 -4.04 -0.02 3.05 16 13 C -0.02 -0.43 0.85 -155.66 -0.13 -0.56 16 14 C -0.49 -12.98 9.30 -34.44 -0.32 -13.30 16 15 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 16 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 17 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 18 Si 0.88 20.97 24.76 -169.99 -4.21 16.76 16 19 H -0.28 -6.38 7.01 56.52 0.40 -5.98 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.26 -5.86 5.98 56.52 0.34 -5.52 16 22 C -0.18 -3.32 9.96 -26.70 -0.27 -3.58 16 23 C -0.19 -3.78 7.59 -26.70 -0.20 -3.99 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.70 7.82 -51.93 -0.41 0.30 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.42 4.76 8.02 -40.82 -0.33 4.43 16 34 H 0.42 7.95 7.93 -40.82 -0.32 7.63 16 35 H 0.07 1.64 6.77 -51.93 -0.35 1.29 16 36 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 40 H 0.09 1.94 7.08 -51.93 -0.37 1.57 16 41 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -31.34 347.65 -5.86 -37.21 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.47 Total: 9.62 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.62 Total: -0.16 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.64 Total: -46.34 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.44 Total: -22.33 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.21 Total: 16.76 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.34 -5.86 -37.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347564604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.815 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds