Wall clock time and date at job start Tue Mar 31 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46944 * 2 1 4 4 C 1.53002 * 109.47075 * 119.99614 * 2 1 3 5 5 O 1.42898 * 109.47159 * 175.00141 * 4 2 1 6 6 N 1.41597 * 114.00015 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99884 * 179.97438 * 6 5 4 8 8 O 1.21343 * 120.00321 * 0.02562 * 7 6 5 9 9 C 1.49451 * 119.99815 * 179.97438 * 7 6 5 10 10 O 1.21348 * 120.00396 * 2.40979 * 9 7 6 11 11 N 1.34776 * 119.99930 * 182.41261 * 9 7 6 12 12 C 1.46494 * 120.00005 * 175.16128 * 11 9 7 13 13 C 1.53000 * 109.47397 * 184.97258 * 12 11 9 14 14 C 1.50698 * 115.55073 * 64.91193 * 13 12 11 15 15 H 1.07996 * 120.00149 * 266.86402 * 14 13 12 16 16 C 1.37876 * 119.99937 * 86.86230 * 14 13 12 17 17 N 1.31510 * 120.00057 * 180.87970 * 16 14 13 18 18 Si 1.86803 * 120.00015 * 0.87520 * 16 14 13 19 19 H 1.48502 * 109.47334 * 84.92557 * 18 16 14 20 20 H 1.48493 * 109.47135 * 204.92646 * 18 16 14 21 21 H 1.48503 * 109.46931 * 324.92667 * 18 16 14 22 22 C 1.53001 * 117.49628 * 279.24516 * 13 12 11 23 23 C 1.52998 * 117.50022 * 210.58936 * 13 12 11 24 24 H 1.08996 * 109.47007 * 300.00274 * 1 2 3 25 25 H 1.09003 * 109.47133 * 60.00222 * 1 2 3 26 26 H 1.09000 * 109.47132 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47365 * 240.00083 * 2 1 3 28 28 H 1.08998 * 109.47330 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47024 * 299.99845 * 3 2 1 30 30 H 1.09000 * 109.47022 * 59.99873 * 3 2 1 31 31 H 1.08999 * 109.46661 * 55.00075 * 4 2 1 32 32 H 1.09003 * 109.47187 * 295.00760 * 4 2 1 33 33 H 0.97002 * 119.99788 * 0.02562 * 6 5 4 34 34 H 0.97005 * 119.99836 * 354.88231 * 11 9 7 35 35 H 1.09002 * 109.47584 * 304.97081 * 12 11 9 36 36 H 1.09002 * 109.47315 * 64.97242 * 12 11 9 37 37 H 0.97002 * 120.00077 * 180.02562 * 17 16 14 38 38 H 1.09000 * 117.50059 * 0.02562 * 22 13 12 39 39 H 1.09004 * 117.50045 * 145.01680 * 22 13 12 40 40 H 1.09002 * 117.49662 * 214.98089 * 23 13 12 41 41 H 1.09007 * 117.50228 * 359.96839 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 3.4642 -0.8237 1.1921 6 7 4.0397 -1.4794 2.3074 7 6 5.3756 -1.6430 2.3775 8 8 6.0854 -1.2279 1.4850 9 6 5.9830 -2.3345 3.5549 10 8 5.2706 -2.7875 4.4266 11 7 7.3221 -2.4551 3.6486 12 6 7.9227 -3.0376 4.8511 13 6 9.4470 -2.9453 4.7559 14 6 10.0146 -1.5493 4.7504 15 1 10.2058 -1.0478 3.8133 16 6 10.2897 -0.9124 5.9419 17 7 10.7688 0.3123 5.9375 18 14 9.9819 -1.7890 7.5625 19 1 11.1584 -2.6291 7.9022 20 1 9.7643 -0.7851 8.6348 21 1 8.7782 -2.6499 7.4387 22 6 10.1679 -4.0043 3.9193 23 6 10.2654 -4.0380 5.4465 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -1.7197 1.2952 32 1 1.7516 -0.1582 2.1370 33 1 3.4723 -1.8116 3.0206 34 1 7.8880 -2.1599 2.9181 35 1 7.5799 -2.4911 5.7297 36 1 7.6266 -4.0832 4.9352 37 1 10.9627 0.7603 6.7757 38 1 9.5563 -4.7664 3.4364 39 1 11.0529 -3.6913 3.3653 40 1 11.2146 -3.7472 5.8967 41 1 9.7180 -4.8225 5.9692 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347564604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:29 Heat of formation + Delta-G solvation = -70.430767 kcal Electronic energy + Delta-G solvation = -22203.787766 eV Core-core repulsion = 18699.921876 eV Total energy + Delta-G solvation = -3503.865890 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66483 -39.91264 -38.89939 -38.67509 -36.30549 -35.21459 -34.21553 -33.06309 -28.99208 -28.08227 -27.60886 -27.03313 -24.87060 -23.32516 -21.88332 -21.31257 -20.91785 -19.93621 -19.02114 -18.15242 -17.73500 -17.38758 -16.96158 -16.60044 -16.50297 -15.82215 -15.45758 -15.32642 -14.96092 -14.73945 -14.72972 -14.28703 -14.11658 -13.75331 -13.54608 -13.08697 -13.02934 -12.90376 -12.63173 -12.46045 -12.15746 -12.13913 -11.98362 -11.82662 -11.65698 -11.60095 -11.00745 -10.92119 -10.66189 -10.37111 -10.22098 -10.10027 -8.28155 -6.36994 0.24383 0.33613 1.38455 1.42014 1.51913 2.02234 2.16266 2.38340 3.04585 3.11475 3.34700 3.45402 3.75809 3.82767 3.98614 4.12166 4.34304 4.36030 4.40815 4.48820 4.49720 4.61085 4.72668 4.77319 4.90118 4.93869 4.98543 5.10656 5.17193 5.18098 5.29586 5.30283 5.36340 5.49744 5.51611 5.69134 5.71497 6.28905 6.30885 6.71453 6.73236 6.89926 7.33927 8.87005 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.003271 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.229625 B = 8559.268110 C = 8823.147399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C -0.151 4.151 4 C 0.023 3.977 5 O -0.158 6.158 6 N -0.558 5.558 7 C 0.522 3.478 8 O -0.533 6.533 9 C 0.520 3.480 10 O -0.544 6.544 11 N -0.665 5.665 12 C 0.159 3.841 13 C -0.047 4.047 14 C -0.486 4.486 15 H 0.036 0.964 16 C 0.021 3.979 17 N -0.948 5.948 18 Si 0.938 3.062 19 H -0.262 1.262 20 H -0.304 1.304 21 H -0.235 1.235 22 C -0.156 4.156 23 C -0.184 4.184 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.431 0.569 34 H 0.416 0.584 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.265 0.735 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.149 -6.179 -7.485 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 C -0.209 4.209 4 C -0.054 4.054 5 O -0.162 6.162 6 N -0.262 5.262 7 C 0.303 3.697 8 O -0.408 6.408 9 C 0.300 3.700 10 O -0.423 6.423 11 N -0.316 5.316 12 C 0.037 3.963 13 C -0.048 4.048 14 C -0.524 4.524 15 H 0.055 0.945 16 C -0.177 4.177 17 N -0.587 5.587 18 Si 0.762 3.238 19 H -0.187 1.187 20 H -0.232 1.232 21 H -0.158 1.158 22 C -0.193 4.193 23 C -0.222 4.222 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.276 0.724 34 H 0.253 0.747 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.968 -5.970 -7.544 22.165 hybrid contribution 0.209 0.484 0.770 0.933 sum -19.760 -5.486 -6.774 21.597 Atomic orbital electron populations 1.21764 0.91406 1.03120 1.03356 1.21119 0.97435 0.96091 0.95905 1.21869 1.00546 0.95660 1.02790 1.23573 0.78266 1.02303 1.01211 1.90607 1.23332 1.75462 1.26837 1.46910 1.05224 1.56588 1.17475 1.20185 0.81439 0.80795 0.87241 1.90782 1.61069 1.49163 1.39789 1.19479 0.83739 0.81031 0.85797 1.90720 1.61083 1.49227 1.41254 1.45695 1.05228 1.59369 1.21261 1.21250 0.92262 0.97374 0.85456 1.19453 0.89664 0.90674 1.05048 1.20390 1.41387 0.97782 0.92824 0.94540 1.25851 0.93851 0.95004 1.02996 1.70048 1.46171 1.14313 1.28183 0.85932 0.80981 0.78492 0.78365 1.18653 1.23157 1.15753 1.22912 1.02664 1.01028 0.92708 1.23058 1.01818 1.01180 0.96094 0.91620 0.90772 0.91361 0.90412 0.94290 0.91082 0.92028 0.89818 0.90504 0.72434 0.74712 0.92701 0.90080 0.92641 0.87400 0.90014 0.90286 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.19 71.98 0.66 -0.52 16 2 C -0.09 -1.18 3.16 -10.79 -0.03 -1.22 16 3 C -0.15 -2.41 9.09 71.98 0.65 -1.76 16 4 C 0.02 0.37 5.61 71.98 0.40 0.77 16 5 O -0.16 -4.11 10.64 -21.39 -0.23 -4.34 16 6 N -0.56 -14.93 6.38 -174.50 -1.11 -16.04 16 7 C 0.52 17.66 8.03 87.27 0.70 18.36 16 8 O -0.53 -21.51 16.89 14.16 0.24 -21.27 16 9 C 0.52 18.20 7.88 87.27 0.69 18.88 16 10 O -0.54 -19.46 16.49 -3.24 -0.05 -19.51 16 11 N -0.67 -24.75 5.44 -464.42 -2.53 -27.28 16 12 C 0.16 6.09 5.21 86.38 0.45 6.54 16 13 C -0.05 -1.97 0.85 -52.93 -0.04 -2.01 16 14 C -0.49 -26.15 9.30 25.60 0.24 -25.91 16 15 H 0.04 2.22 8.06 -2.91 -0.02 2.19 16 16 C 0.02 1.17 5.47 84.66 0.46 1.63 16 17 N -0.95 -58.40 13.96 21.45 0.30 -58.10 16 18 Si 0.94 42.88 24.76 68.60 1.70 44.58 16 19 H -0.26 -11.29 7.01 99.48 0.70 -10.60 16 20 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 21 H -0.23 -9.68 5.98 99.48 0.59 -9.09 16 22 C -0.16 -5.44 9.96 30.62 0.30 -5.13 16 23 C -0.18 -6.67 7.59 30.62 0.23 -6.44 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 0.83 7.82 -2.39 -0.02 0.81 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.43 9.02 8.02 -92.71 -0.74 8.27 16 34 H 0.42 15.94 7.93 -92.70 -0.74 15.20 16 35 H 0.05 2.31 6.77 -2.39 -0.02 2.29 16 36 H 0.08 2.66 8.09 -2.39 -0.02 2.64 16 37 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.08 2.99 8.14 -2.38 -0.02 2.97 16 40 H 0.08 3.10 7.08 -2.39 -0.02 3.09 16 41 H 0.11 3.27 8.14 -2.38 -0.02 3.25 16 Total: -1.00 -69.67 347.65 2.47 -67.20 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.56 Total: 31.58 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 4.72 Total: 3.19 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -3.34 Total: -101.42 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -0.04 Total: -45.12 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.70 Total: 44.58 kcal Total: -69.67 2.47 -67.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347564604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.231 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds