Wall clock time and date at job start Tue Mar 31 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46990 * 2 1 4 4 C 1.52999 * 109.47439 * 239.99604 * 2 1 3 5 5 O 1.45199 * 109.47113 * 119.99681 * 2 1 3 6 6 C 1.34638 * 117.00243 * 59.99736 * 5 2 1 7 7 O 1.21518 * 119.99603 * 0.02562 * 6 5 2 8 8 N 1.34775 * 120.00272 * 179.97438 * 6 5 2 9 9 C 1.46503 * 120.00041 * 180.02562 * 8 6 5 10 10 H 1.08999 * 112.84660 * 23.80215 * 9 8 6 11 11 C 1.53775 * 113.61615 * 155.00294 * 9 8 6 12 12 C 1.53781 * 87.08404 * 89.19755 * 11 9 8 13 13 H 1.08999 * 113.61856 * 270.80626 * 12 11 9 14 14 N 1.46496 * 113.61606 * 139.98009 * 12 11 9 15 15 C 1.34776 * 119.99968 * 155.00319 * 14 12 11 16 16 O 1.21684 * 120.00304 * 0.02562 * 15 14 12 17 17 C 1.46375 * 119.99914 * 179.97438 * 15 14 12 18 18 H 1.07998 * 120.00241 * 6.74858 * 17 15 14 19 19 C 1.40048 * 119.99847 * 186.74781 * 17 15 14 20 20 N 1.30665 * 120.00331 * 6.79333 * 19 17 15 21 21 Si 1.86809 * 120.00005 * 186.79144 * 19 17 15 22 22 H 1.48502 * 109.46851 * 84.98855 * 21 19 17 23 23 H 1.48502 * 109.46677 * 324.99249 * 21 19 17 24 24 H 1.48496 * 109.47064 * 204.99115 * 21 19 17 25 25 C 1.53787 * 87.08096 * 25.43313 * 12 11 9 26 26 H 1.09000 * 109.47080 * 299.99751 * 1 2 3 27 27 H 1.08994 * 109.47045 * 60.00341 * 1 2 3 28 28 H 1.09001 * 109.46948 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47553 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47205 * 299.99544 * 3 2 1 31 31 H 1.09001 * 109.47340 * 59.99501 * 3 2 1 32 32 H 1.09002 * 109.46781 * 300.00411 * 4 2 1 33 33 H 1.08999 * 109.46657 * 59.99633 * 4 2 1 34 34 H 1.08999 * 109.47415 * 180.02562 * 4 2 1 35 35 H 0.96999 * 120.00069 * 0.02562 * 8 6 5 36 36 H 1.09005 * 113.61361 * 334.65108 * 11 9 8 37 37 H 1.08999 * 113.68975 * 203.75904 * 11 9 8 38 38 H 0.96999 * 119.99938 * 334.99947 * 14 12 11 39 39 H 0.97000 * 120.00681 * 179.97438 * 20 19 17 40 40 H 1.09005 * 113.61373 * 89.11189 * 25 12 11 41 41 H 1.08997 * 113.61980 * 220.02342 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5097 0.5037 8 7 2.0680 -2.6656 2.4169 9 6 1.6748 -4.0670 2.5829 10 1 1.4224 -4.5504 1.6392 11 6 2.6484 -4.8813 3.4511 12 6 1.8065 -4.4481 4.6629 13 1 2.1351 -3.5100 5.1101 14 7 1.6101 -5.5114 5.6513 15 6 1.3599 -5.1976 6.9379 16 8 1.2966 -4.0311 7.2785 17 6 1.1631 -6.2600 7.9254 18 1 1.3254 -7.2913 7.6488 19 6 0.7643 -5.9392 9.2290 20 7 0.4397 -4.7096 9.5291 21 14 0.6965 -7.2693 10.5391 22 1 2.0422 -7.4372 11.1441 23 1 0.2678 -8.5502 9.9220 24 1 -0.2744 -6.8777 11.5922 25 6 0.6281 -4.2883 3.6877 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1391 34 1 3.1301 -0.7217 -1.2489 35 1 2.6277 -2.2367 3.0830 36 1 3.6632 -4.4833 3.4598 37 1 2.6159 -5.9535 3.2577 38 1 1.6601 -6.4413 5.3798 39 1 0.1632 -4.4874 10.4319 40 1 0.0422 -5.1983 3.5581 41 1 0.0119 -3.4117 3.8873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351028288.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:10 Heat of formation + Delta-G solvation = -107.533883 kcal Electronic energy + Delta-G solvation = -22487.630594 eV Core-core repulsion = 18982.155793 eV Total energy + Delta-G solvation = -3505.474802 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86463 -39.28468 -37.18800 -36.31640 -34.35630 -33.24655 -32.44873 -31.08563 -27.59518 -27.53407 -26.49629 -25.45253 -24.18981 -22.39278 -20.28296 -19.88994 -19.13383 -18.23996 -17.14890 -16.61801 -16.16273 -15.61107 -15.29683 -15.13980 -14.57452 -14.46415 -14.16561 -13.69498 -13.33627 -13.02532 -12.69998 -12.51252 -12.36407 -12.25002 -12.06973 -12.05303 -11.92364 -11.68843 -11.53262 -11.43743 -11.06619 -11.04035 -10.50508 -10.48984 -10.37205 -10.31447 -10.11803 -10.00418 -9.05415 -8.85931 -7.63392 -7.52865 -6.23137 -4.65127 2.13478 2.83693 3.13921 3.20449 3.22996 4.08750 4.10279 4.52374 4.54394 4.58598 4.68436 4.72929 4.84829 4.87877 5.27104 5.29971 5.35081 5.38406 5.42915 5.49557 5.58179 5.68813 5.75466 5.79965 5.86608 5.92519 5.96590 6.11278 6.15601 6.26384 6.32495 6.41902 6.50278 6.75831 7.42066 7.45891 7.90617 8.08071 8.32071 8.39871 9.01077 9.51023 10.57818 10.75714 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.039821 B = 0.002877 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.986076 B = 9731.359465 C =10067.024953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.366 6.366 6 C 0.653 3.347 7 O -0.571 6.571 8 N -0.689 5.689 9 C 0.137 3.863 10 H 0.105 0.895 11 C -0.156 4.156 12 C 0.141 3.859 13 H 0.102 0.898 14 N -0.755 5.755 15 C 0.556 3.444 16 O -0.583 6.583 17 C -0.548 4.548 18 H 0.068 0.932 19 C 0.089 3.911 20 N -0.769 5.769 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.266 1.266 24 H -0.280 1.280 25 C -0.166 4.166 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.408 0.592 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.382 0.618 39 H 0.269 0.731 40 H 0.091 0.909 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 6.228 -18.313 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.280 6.280 6 C 0.406 3.594 7 O -0.461 6.461 8 N -0.347 5.347 9 C 0.032 3.968 10 H 0.123 0.877 11 C -0.195 4.195 12 C 0.033 3.967 13 H 0.120 0.880 14 N -0.408 5.408 15 C 0.360 3.640 16 O -0.466 6.466 17 C -0.585 4.585 18 H 0.086 0.914 19 C -0.131 4.131 20 N -0.398 5.398 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.190 1.190 24 H -0.205 1.205 25 C -0.207 4.207 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.243 0.757 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.214 0.786 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.135 7.035 -18.358 19.908 hybrid contribution 0.148 -0.869 0.788 1.182 sum 3.283 6.166 -17.571 18.908 Atomic orbital electron populations 1.22521 0.93985 1.05202 1.02437 1.22043 0.94423 0.91478 0.82129 1.21860 1.02205 0.92639 1.03110 1.22514 1.01466 1.03580 0.96439 1.86312 1.71588 1.23764 1.46385 1.18042 0.78717 0.80397 0.82218 1.90877 1.41213 1.70380 1.43601 1.44454 1.54868 1.12100 1.23282 1.21731 0.97007 0.78870 0.99202 0.87686 1.23804 0.98699 1.00672 0.96315 1.22010 0.93419 0.94190 0.87059 0.87990 1.46087 1.78907 1.06743 1.09015 1.18240 0.76092 0.89749 0.79900 1.90583 1.55772 1.21033 1.79238 1.20879 1.49466 0.93220 0.94922 0.91391 1.25694 0.92737 0.95632 0.99023 1.69979 1.31426 1.18597 1.19771 0.86396 0.78544 0.81508 0.80327 1.19634 1.18998 1.20548 1.24034 0.98163 1.02669 0.95841 0.92069 0.91273 0.89274 0.91506 0.90234 0.91384 0.89320 0.91269 0.92246 0.75672 0.90805 0.88391 0.78638 0.92023 0.89022 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 2 C 0.14 1.44 1.13 -90.62 -0.10 1.34 16 3 C -0.14 -1.11 8.85 37.15 0.33 -0.78 16 4 C -0.18 -1.81 8.37 37.16 0.31 -1.50 16 5 O -0.37 -4.77 9.94 -40.32 -0.40 -5.17 16 6 C 0.65 9.35 8.06 54.05 0.44 9.79 16 7 O -0.57 -9.09 11.48 -19.29 -0.22 -9.31 16 8 N -0.69 -9.16 5.27 -57.93 -0.31 -9.47 16 9 C 0.14 1.84 4.32 -67.12 -0.29 1.55 16 10 H 0.11 1.40 7.46 -51.93 -0.39 1.01 16 11 C -0.16 -2.03 7.58 -25.92 -0.20 -2.23 16 12 C 0.14 2.52 4.12 -67.12 -0.28 2.24 16 13 H 0.10 2.06 7.46 -51.93 -0.39 1.67 16 14 N -0.75 -16.13 5.35 -54.42 -0.29 -16.42 16 15 C 0.56 15.50 7.72 -12.99 -0.10 15.40 16 16 O -0.58 -18.57 14.71 5.20 0.08 -18.50 16 17 C -0.55 -15.28 9.53 -35.63 -0.34 -15.62 16 18 H 0.07 1.73 7.86 -52.49 -0.41 1.32 16 19 C 0.09 2.47 5.48 -17.37 -0.10 2.37 16 20 N -0.77 -22.95 11.91 55.55 0.66 -22.29 16 21 Si 0.91 20.01 29.56 -169.99 -5.03 14.98 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.17 -2.68 7.68 -25.91 -0.20 -2.88 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 1.17 5.88 -51.93 -0.31 0.86 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.08 5.88 -51.93 -0.31 0.78 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.41 4.95 8.81 -40.82 -0.36 4.59 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.14 8.12 -51.93 -0.42 0.72 16 38 H 0.38 7.10 8.71 -40.82 -0.36 6.74 16 39 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -34.70 340.65 -6.88 -41.58 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.30 Total: 11.43 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -0.21 Total: 8.03 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.06 Total: -48.18 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.55 Total: -32.98 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.70 -6.88 -41.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351028288.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.954 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds