Wall clock time and date at job start Tue Mar 31 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46990 * 2 1 4 4 C 1.52999 * 109.47439 * 239.99604 * 2 1 3 5 5 O 1.45199 * 109.47113 * 119.99681 * 2 1 3 6 6 C 1.34638 * 117.00243 * 59.99736 * 5 2 1 7 7 O 1.21518 * 119.99603 * 0.02562 * 6 5 2 8 8 N 1.34775 * 120.00272 * 179.97438 * 6 5 2 9 9 C 1.46503 * 120.00041 * 180.02562 * 8 6 5 10 10 H 1.08999 * 112.84660 * 23.80215 * 9 8 6 11 11 C 1.53775 * 113.61615 * 155.00294 * 9 8 6 12 12 C 1.53781 * 87.08404 * 89.19755 * 11 9 8 13 13 H 1.08999 * 113.61856 * 270.80626 * 12 11 9 14 14 N 1.46496 * 113.61606 * 139.98009 * 12 11 9 15 15 C 1.34776 * 119.99968 * 155.00319 * 14 12 11 16 16 O 1.21684 * 120.00304 * 0.02562 * 15 14 12 17 17 C 1.46375 * 119.99914 * 179.97438 * 15 14 12 18 18 H 1.07998 * 120.00241 * 6.74858 * 17 15 14 19 19 C 1.40048 * 119.99847 * 186.74781 * 17 15 14 20 20 N 1.30665 * 120.00331 * 6.79333 * 19 17 15 21 21 Si 1.86809 * 120.00005 * 186.79144 * 19 17 15 22 22 H 1.48502 * 109.46851 * 84.98855 * 21 19 17 23 23 H 1.48502 * 109.46677 * 324.99249 * 21 19 17 24 24 H 1.48496 * 109.47064 * 204.99115 * 21 19 17 25 25 C 1.53787 * 87.08096 * 25.43313 * 12 11 9 26 26 H 1.09000 * 109.47080 * 299.99751 * 1 2 3 27 27 H 1.08994 * 109.47045 * 60.00341 * 1 2 3 28 28 H 1.09001 * 109.46948 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47553 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47205 * 299.99544 * 3 2 1 31 31 H 1.09001 * 109.47340 * 59.99501 * 3 2 1 32 32 H 1.09002 * 109.46781 * 300.00411 * 4 2 1 33 33 H 1.08999 * 109.46657 * 59.99633 * 4 2 1 34 34 H 1.08999 * 109.47415 * 180.02562 * 4 2 1 35 35 H 0.96999 * 120.00069 * 0.02562 * 8 6 5 36 36 H 1.09005 * 113.61361 * 334.65108 * 11 9 8 37 37 H 1.08999 * 113.68975 * 203.75904 * 11 9 8 38 38 H 0.96999 * 119.99938 * 334.99947 * 14 12 11 39 39 H 0.97000 * 120.00681 * 179.97438 * 20 19 17 40 40 H 1.09005 * 113.61373 * 89.11189 * 25 12 11 41 41 H 1.08997 * 113.61980 * 220.02342 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5097 0.5037 8 7 2.0680 -2.6656 2.4169 9 6 1.6748 -4.0670 2.5829 10 1 1.4224 -4.5504 1.6392 11 6 2.6484 -4.8813 3.4511 12 6 1.8065 -4.4481 4.6629 13 1 2.1351 -3.5100 5.1101 14 7 1.6101 -5.5114 5.6513 15 6 1.3599 -5.1976 6.9379 16 8 1.2966 -4.0311 7.2785 17 6 1.1631 -6.2600 7.9254 18 1 1.3254 -7.2913 7.6488 19 6 0.7643 -5.9392 9.2290 20 7 0.4397 -4.7096 9.5291 21 14 0.6965 -7.2693 10.5391 22 1 2.0422 -7.4372 11.1441 23 1 0.2678 -8.5502 9.9220 24 1 -0.2744 -6.8777 11.5922 25 6 0.6281 -4.2883 3.6877 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1391 34 1 3.1301 -0.7217 -1.2489 35 1 2.6277 -2.2367 3.0830 36 1 3.6632 -4.4833 3.4598 37 1 2.6159 -5.9535 3.2577 38 1 1.6601 -6.4413 5.3798 39 1 0.1632 -4.4874 10.4319 40 1 0.0422 -5.1983 3.5581 41 1 0.0119 -3.4117 3.8873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351028288.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:10 Heat of formation + Delta-G solvation = -134.047593 kcal Electronic energy + Delta-G solvation = -22488.780315 eV Core-core repulsion = 18982.155793 eV Total energy + Delta-G solvation = -3506.624522 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.93844 -40.59816 -38.81864 -37.73111 -35.40515 -34.76962 -34.31378 -32.74998 -28.53177 -28.34883 -28.28399 -26.68475 -25.57627 -23.56904 -21.90832 -21.10469 -20.53911 -19.32003 -19.04249 -17.65524 -17.45694 -17.21749 -16.78608 -16.46014 -15.93044 -15.60721 -15.36629 -15.01404 -14.67577 -14.50013 -14.13845 -13.75795 -13.43278 -13.34474 -13.28386 -13.08619 -12.89851 -12.85584 -12.81842 -12.73220 -12.55594 -12.48247 -12.30016 -12.03157 -11.75745 -11.47068 -11.38154 -11.10984 -10.91570 -10.21701 -9.82532 -9.37746 -8.30635 -6.82824 1.13629 1.41013 1.42955 1.57106 1.71776 2.25716 2.47630 3.10606 3.20989 3.47069 3.52964 3.71328 3.76299 3.81681 3.96012 4.11239 4.12691 4.44295 4.58653 4.63296 4.71103 4.77157 4.77743 4.83518 4.88622 4.89160 4.92749 5.04356 5.04699 5.15452 5.29761 5.33516 5.33977 5.45498 5.58916 5.91804 6.27446 6.34659 6.36967 6.88731 7.31043 7.59916 8.51740 8.68767 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.039821 B = 0.002877 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.986076 B = 9731.359465 C =10067.024953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.136 4.136 4 C -0.177 4.177 5 O -0.372 6.372 6 C 0.650 3.350 7 O -0.589 6.589 8 N -0.688 5.688 9 C 0.152 3.848 10 H 0.116 0.884 11 C -0.126 4.126 12 C 0.121 3.879 13 H 0.072 0.928 14 N -0.741 5.741 15 C 0.540 3.460 16 O -0.636 6.636 17 C -0.576 4.576 18 H 0.089 0.911 19 C 0.029 3.971 20 N -0.825 5.825 21 Si 0.997 3.003 22 H -0.262 1.262 23 H -0.248 1.248 24 H -0.275 1.275 25 C -0.165 4.165 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.413 0.587 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.398 0.602 39 H 0.274 0.726 40 H 0.101 0.899 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.397 5.006 -19.513 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.086 3.914 3 C -0.193 4.193 4 C -0.234 4.234 5 O -0.287 6.287 6 C 0.404 3.596 7 O -0.479 6.479 8 N -0.347 5.347 9 C 0.047 3.953 10 H 0.134 0.866 11 C -0.165 4.165 12 C 0.015 3.985 13 H 0.090 0.910 14 N -0.394 5.394 15 C 0.344 3.656 16 O -0.523 6.523 17 C -0.613 4.613 18 H 0.107 0.893 19 C -0.186 4.186 20 N -0.454 5.454 21 Si 0.816 3.184 22 H -0.187 1.187 23 H -0.171 1.171 24 H -0.200 1.200 25 C -0.206 4.206 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.249 0.751 36 H 0.109 0.891 37 H 0.143 0.857 38 H 0.232 0.768 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.951 5.794 -19.625 20.841 hybrid contribution -0.124 -0.415 1.065 1.150 sum 3.827 5.379 -18.560 19.699 Atomic orbital electron populations 1.22488 0.94250 1.03656 1.03459 1.22464 0.94467 0.92831 0.81632 1.21894 1.02522 0.90666 1.04241 1.22458 1.01709 1.02234 0.97040 1.86328 1.71610 1.23041 1.47721 1.18173 0.78476 0.80828 0.82124 1.90873 1.41935 1.70886 1.44254 1.44484 1.54726 1.12187 1.23270 1.21585 0.95790 0.79179 0.98775 0.86574 1.23677 0.98656 1.02159 0.92025 1.22243 0.96298 0.92465 0.87527 0.91029 1.45726 1.77466 1.08426 1.07774 1.18601 0.75853 0.89133 0.82028 1.90538 1.58112 1.22919 1.80770 1.21447 1.49716 0.94226 0.95866 0.89300 1.26962 0.91454 0.98378 1.01797 1.70150 1.32814 1.21677 1.20776 0.85048 0.78888 0.78024 0.76410 1.18714 1.17111 1.20014 1.24019 0.97956 1.02085 0.96534 0.92595 0.88718 0.91990 0.91029 0.87653 0.91698 0.91830 0.88886 0.91758 0.75133 0.89108 0.85745 0.76775 0.91606 0.88104 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.74 8.37 71.98 0.60 -3.14 16 2 C 0.12 2.46 1.13 -10.79 -0.01 2.44 16 3 C -0.14 -1.87 8.85 71.98 0.64 -1.24 16 4 C -0.18 -3.25 8.37 71.98 0.60 -2.65 16 5 O -0.37 -9.60 9.94 -55.48 -0.55 -10.15 16 6 C 0.65 18.54 8.06 129.79 1.05 19.59 16 7 O -0.59 -18.72 11.48 19.79 0.23 -18.49 16 8 N -0.69 -18.10 5.27 -567.59 -2.99 -21.09 16 9 C 0.15 3.90 4.32 45.52 0.20 4.10 16 10 H 0.12 2.86 7.46 -2.39 -0.02 2.84 16 11 C -0.13 -3.03 7.58 31.12 0.24 -2.79 16 12 C 0.12 4.36 4.12 45.52 0.19 4.55 16 13 H 0.07 3.03 7.46 -2.39 -0.02 3.01 16 14 N -0.74 -31.76 5.35 -444.32 -2.38 -34.13 16 15 C 0.54 30.86 7.72 86.36 0.67 31.53 16 16 O -0.64 -42.39 14.71 -4.30 -0.06 -42.45 16 17 C -0.58 -32.29 9.53 24.83 0.24 -32.05 16 18 H 0.09 4.43 7.86 -2.91 -0.02 4.40 16 19 C 0.03 1.62 5.48 85.31 0.47 2.08 16 20 N -0.82 -50.65 11.91 21.83 0.26 -50.39 16 21 Si 1.00 40.81 29.56 68.60 2.03 42.84 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 24 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 25 C -0.17 -5.34 7.68 31.13 0.24 -5.11 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 1.64 5.88 -2.39 -0.01 1.62 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.52 5.88 -2.39 -0.01 1.50 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.41 10.04 8.81 -92.71 -0.82 9.22 16 36 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.12 2.42 8.12 -2.39 -0.02 2.40 16 38 H 0.40 14.31 8.71 -92.71 -0.81 13.50 16 39 H 0.27 15.28 8.29 -92.71 -0.77 14.51 16 40 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -78.92 340.65 1.07 -77.86 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: -0.57 Total: 38.70 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 5.11 Total: 17.31 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -5.11 Total: -105.62 kcal Atomic # 8 Polarization: -70.70 SS G_CDS: -0.39 Total: -71.09 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -78.92 1.07 -77.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351028288.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.191 kcal (2) G-P(sol) polarization free energy of solvation -78.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds