Wall clock time and date at job start Tue Mar 31 2020 05:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58358 * 2 1 4 4 C 1.53187 * 109.59031 * 120.28249 * 2 1 3 5 5 C 1.53043 * 109.31237 * 65.14971 * 4 2 1 6 6 C 1.53040 * 109.53616 * 61.36596 * 5 4 2 7 7 H 1.09000 * 109.49485 * 58.58837 * 6 5 4 8 8 C 1.50695 * 109.49976 * 178.68512 * 6 5 4 9 9 O 1.20823 * 120.00069 * 359.83689 * 8 6 5 10 10 O 1.34233 * 120.00343 * 179.83920 * 8 6 5 11 11 C 1.53194 * 109.31544 * 298.63927 * 6 5 4 12 12 N 1.46918 * 108.77531 * 54.63018 * 11 6 5 13 13 C 1.34780 * 120.62881 * 126.37458 * 12 11 6 14 14 O 1.21591 * 120.00070 * 174.98687 * 13 12 11 15 15 N 1.34775 * 120.00011 * 354.98315 * 13 12 11 16 16 C 1.46495 * 120.00016 * 185.07164 * 15 13 12 17 17 C 1.53004 * 109.47161 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.46961 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00328 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99585 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00201 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99714 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47297 * 90.00297 * 22 20 18 24 24 H 1.48502 * 109.47213 * 210.00704 * 22 20 18 25 25 H 1.48500 * 109.47430 * 330.00145 * 22 20 18 26 26 H 1.09004 * 109.46930 * 299.71629 * 1 2 3 27 27 H 1.09002 * 109.47162 * 59.71480 * 1 2 3 28 28 H 1.08999 * 109.47198 * 179.71648 * 1 2 3 29 29 H 1.09000 * 109.50371 * 185.10367 * 4 2 1 30 30 H 1.09004 * 109.49700 * 305.20672 * 4 2 1 31 31 H 1.08998 * 109.46346 * 181.38556 * 5 4 2 32 32 H 1.08997 * 109.46175 * 301.34872 * 5 4 2 33 33 H 0.96699 * 117.00051 * 179.97438 * 10 8 6 34 34 H 1.09005 * 109.58371 * 294.84971 * 11 6 5 35 35 H 1.08996 * 109.70802 * 174.49061 * 11 6 5 36 36 H 0.96996 * 119.99658 * 5.08040 * 15 13 12 37 37 H 1.09005 * 109.47685 * 300.00668 * 16 15 13 38 38 H 1.09005 * 109.47041 * 60.00561 * 16 15 13 39 39 H 1.08994 * 109.47047 * 300.00241 * 17 16 15 40 40 H 1.08997 * 109.46714 * 60.00416 * 17 16 15 41 41 H 0.97000 * 120.00245 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 1.6415 -2.2026 1.1729 6 6 2.2800 -2.8464 -0.0599 7 1 3.3640 -2.7474 -0.0018 8 6 1.9099 -4.3062 -0.1137 9 8 1.2098 -4.7841 0.7473 10 8 2.3580 -5.0758 -1.1181 11 6 1.7692 -2.1426 -1.3211 12 7 2.0226 -0.7011 -1.1936 13 6 2.6944 -0.0344 -2.1532 14 8 2.8188 1.1730 -2.0813 15 7 3.2284 -0.7062 -3.1925 16 6 4.0523 0.0009 -4.1760 17 6 4.5302 -0.9850 -5.2441 18 6 5.3782 -0.2577 -6.2555 19 1 5.5586 0.8015 -6.1472 20 6 5.9246 -0.9450 -7.3186 21 7 5.7053 -2.2349 -7.4503 22 14 6.9763 -0.0436 -8.5720 23 1 8.3971 -0.0768 -8.1414 24 1 6.8446 -0.7043 -9.8954 25 1 6.5234 1.3668 -8.6757 26 1 -0.3633 0.5094 0.8926 27 1 -0.3633 0.5183 -0.8874 28 1 -0.3633 -1.0276 -0.0051 29 1 3.1298 -0.6487 1.2921 30 1 1.6075 -0.2757 2.1372 31 1 1.9845 -2.7176 2.0702 32 1 0.5566 -2.2801 1.1022 33 1 2.0944 -6.0061 -1.1097 34 1 0.6986 -2.3173 -1.4288 35 1 2.2924 -2.5296 -2.1955 36 1 3.0671 -1.6577 -3.2892 37 1 3.4621 0.7876 -4.6462 38 1 4.9148 0.4428 -3.6771 39 1 5.1202 -1.7718 -4.7742 40 1 3.6675 -1.4265 -5.7429 41 1 6.0894 -2.7183 -8.1984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353005790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:03 Heat of formation + Delta-G solvation = -132.225581 kcal Electronic energy + Delta-G solvation = -23028.450976 eV Core-core repulsion = 19521.905461 eV Total energy + Delta-G solvation = -3506.545514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06229 -39.96257 -37.75791 -36.36520 -34.94629 -33.31063 -32.91652 -32.33614 -29.41820 -28.20628 -25.17457 -24.78679 -24.13356 -21.91513 -20.98642 -20.48891 -18.89504 -18.31953 -18.08569 -16.71269 -16.56574 -16.16409 -15.75783 -15.17404 -14.99229 -14.51520 -14.23163 -14.06905 -13.98474 -13.64317 -13.25905 -13.01702 -12.69464 -12.40155 -12.34876 -12.22557 -11.80812 -11.60988 -11.35670 -11.09535 -11.08074 -11.00561 -10.84401 -10.62607 -10.58377 -10.31963 -9.89363 -9.53729 -9.25605 -8.80424 -8.46586 -8.22826 -6.08470 -4.11044 1.88040 2.62000 2.91360 3.30238 3.36450 3.40912 3.48634 4.14611 4.23627 4.43210 4.44156 4.60960 4.71720 4.86507 5.08753 5.14472 5.23573 5.28053 5.28784 5.37071 5.44793 5.60299 5.66666 5.72996 5.84960 5.91644 6.16644 6.23897 6.27773 6.40028 6.56711 6.77415 6.97967 7.12701 7.56086 7.61778 7.63821 7.90540 8.23615 8.34963 8.90720 8.96535 9.53722 11.03184 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.003852 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.197544 B = 7267.061776 C = 8419.968307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.151 3.849 3 H 0.105 0.895 4 C -0.129 4.129 5 C -0.104 4.104 6 C -0.097 4.097 7 H 0.117 0.883 8 C 0.487 3.513 9 O -0.515 6.515 10 O -0.510 6.510 11 C 0.123 3.877 12 N -0.629 5.629 13 C 0.705 3.295 14 O -0.592 6.592 15 N -0.739 5.739 16 C 0.139 3.861 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.412 0.588 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.392 0.608 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.847 -3.908 17.243 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.123 0.877 4 C -0.167 4.167 5 C -0.141 4.141 6 C -0.117 4.117 7 H 0.134 0.866 8 C 0.329 3.671 9 O -0.403 6.403 10 O -0.322 6.322 11 C -0.001 4.001 12 N -0.367 5.367 13 C 0.406 3.594 14 O -0.470 6.470 15 N -0.394 5.394 16 C 0.016 3.984 17 C -0.025 4.025 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.271 0.729 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.228 0.772 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.745 -2.853 17.359 20.111 hybrid contribution 0.374 -0.937 -0.799 1.287 sum -9.372 -3.790 16.560 19.402 Atomic orbital electron populations 1.22172 0.95304 1.02160 1.02496 1.21029 0.93755 0.97615 0.82872 0.87740 1.21972 1.02017 0.94660 0.98032 1.21465 1.01510 0.95332 0.95827 1.21487 1.04274 0.86892 0.99035 0.86557 1.23318 0.76076 0.89624 0.78114 1.90718 1.35621 1.75109 1.38826 1.84586 1.71442 1.27213 1.48923 1.21427 1.01274 0.81199 0.96239 1.47326 1.60138 1.07448 1.21797 1.15942 0.78285 0.85244 0.79913 1.90884 1.65380 1.12024 1.78721 1.45749 1.54574 1.12453 1.26633 1.21618 0.92232 0.96110 0.88443 1.19324 0.96619 0.94284 0.92227 1.21048 1.30913 0.95462 1.08497 0.92221 1.24984 0.96442 0.94876 0.97927 1.69953 1.44894 1.07481 1.30992 0.86520 0.80625 0.79920 0.80537 1.20580 1.21198 1.19714 0.91492 0.92065 0.92371 0.91036 0.89960 0.90667 0.90428 0.72899 0.90861 0.88714 0.77165 0.92658 0.92798 0.95969 0.95975 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.02 37.16 0.34 -1.16 16 2 C 0.15 1.65 3.19 -67.60 -0.22 1.43 16 3 H 0.10 1.34 7.04 -51.93 -0.37 0.98 16 4 C -0.13 -1.08 5.55 -26.61 -0.15 -1.23 16 5 C -0.10 -0.87 4.25 -26.69 -0.11 -0.99 16 6 C -0.10 -0.89 2.78 -91.65 -0.25 -1.14 16 7 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 8 C 0.49 4.75 7.63 36.00 0.27 5.02 16 9 O -0.51 -6.24 16.74 -18.75 -0.31 -6.56 16 10 O -0.51 -4.23 13.35 -39.27 -0.52 -4.75 16 11 C 0.12 1.27 5.23 -3.71 -0.02 1.25 16 12 N -0.63 -8.08 2.68 -170.91 -0.46 -8.54 16 13 C 0.70 12.25 8.30 -86.92 -0.72 11.53 16 14 O -0.59 -12.48 15.79 5.29 0.08 -12.40 16 15 N -0.74 -13.08 5.47 -65.22 -0.36 -13.43 16 16 C 0.14 2.96 5.62 -4.04 -0.02 2.94 16 17 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 18 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 22 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.50 5.72 -51.93 -0.30 0.20 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.08 0.66 6.49 -51.93 -0.34 0.33 16 33 H 0.41 1.73 9.10 45.56 0.41 2.15 16 34 H 0.07 0.69 7.48 -51.93 -0.39 0.30 16 35 H 0.09 1.00 5.56 -51.93 -0.29 0.71 16 36 H 0.39 6.10 5.93 -40.82 -0.24 5.86 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -33.87 334.12 -7.53 -41.40 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.27 Total: 3.48 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -1.44 Total: 4.71 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.08 Total: -47.19 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.75 Total: -23.71 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.87 -7.53 -41.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353005790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.826 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds