Wall clock time and date at job start Tue Mar 31 2020 05:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58358 * 2 1 4 4 C 1.53187 * 109.59031 * 120.28249 * 2 1 3 5 5 C 1.53043 * 109.31237 * 65.14971 * 4 2 1 6 6 C 1.53040 * 109.53616 * 61.36596 * 5 4 2 7 7 H 1.09000 * 109.49485 * 58.58837 * 6 5 4 8 8 C 1.50695 * 109.49976 * 178.68512 * 6 5 4 9 9 O 1.20823 * 120.00069 * 359.83689 * 8 6 5 10 10 O 1.34233 * 120.00343 * 179.83920 * 8 6 5 11 11 C 1.53194 * 109.31544 * 298.63927 * 6 5 4 12 12 N 1.46918 * 108.77531 * 54.63018 * 11 6 5 13 13 C 1.34780 * 120.62881 * 126.37458 * 12 11 6 14 14 O 1.21591 * 120.00070 * 174.98687 * 13 12 11 15 15 N 1.34775 * 120.00011 * 354.98315 * 13 12 11 16 16 C 1.46495 * 120.00016 * 185.07164 * 15 13 12 17 17 C 1.53004 * 109.47161 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.46961 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00328 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99585 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00201 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99714 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47297 * 90.00297 * 22 20 18 24 24 H 1.48502 * 109.47213 * 210.00704 * 22 20 18 25 25 H 1.48500 * 109.47430 * 330.00145 * 22 20 18 26 26 H 1.09004 * 109.46930 * 299.71629 * 1 2 3 27 27 H 1.09002 * 109.47162 * 59.71480 * 1 2 3 28 28 H 1.08999 * 109.47198 * 179.71648 * 1 2 3 29 29 H 1.09000 * 109.50371 * 185.10367 * 4 2 1 30 30 H 1.09004 * 109.49700 * 305.20672 * 4 2 1 31 31 H 1.08998 * 109.46346 * 181.38556 * 5 4 2 32 32 H 1.08997 * 109.46175 * 301.34872 * 5 4 2 33 33 H 0.96699 * 117.00051 * 179.97438 * 10 8 6 34 34 H 1.09005 * 109.58371 * 294.84971 * 11 6 5 35 35 H 1.08996 * 109.70802 * 174.49061 * 11 6 5 36 36 H 0.96996 * 119.99658 * 5.08040 * 15 13 12 37 37 H 1.09005 * 109.47685 * 300.00668 * 16 15 13 38 38 H 1.09005 * 109.47041 * 60.00561 * 16 15 13 39 39 H 1.08994 * 109.47047 * 300.00241 * 17 16 15 40 40 H 1.08997 * 109.46714 * 60.00416 * 17 16 15 41 41 H 0.97000 * 120.00245 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 1.6415 -2.2026 1.1729 6 6 2.2800 -2.8464 -0.0599 7 1 3.3640 -2.7474 -0.0018 8 6 1.9099 -4.3062 -0.1137 9 8 1.2098 -4.7841 0.7473 10 8 2.3580 -5.0758 -1.1181 11 6 1.7692 -2.1426 -1.3211 12 7 2.0226 -0.7011 -1.1936 13 6 2.6944 -0.0344 -2.1532 14 8 2.8188 1.1730 -2.0813 15 7 3.2284 -0.7062 -3.1925 16 6 4.0523 0.0009 -4.1760 17 6 4.5302 -0.9850 -5.2441 18 6 5.3782 -0.2577 -6.2555 19 1 5.5586 0.8015 -6.1472 20 6 5.9246 -0.9450 -7.3186 21 7 5.7053 -2.2349 -7.4503 22 14 6.9763 -0.0436 -8.5720 23 1 8.3971 -0.0768 -8.1414 24 1 6.8446 -0.7043 -9.8954 25 1 6.5234 1.3668 -8.6757 26 1 -0.3633 0.5094 0.8926 27 1 -0.3633 0.5183 -0.8874 28 1 -0.3633 -1.0276 -0.0051 29 1 3.1298 -0.6487 1.2921 30 1 1.6075 -0.2757 2.1372 31 1 1.9845 -2.7176 2.0702 32 1 0.5566 -2.2801 1.1022 33 1 2.0944 -6.0061 -1.1097 34 1 0.6986 -2.3173 -1.4288 35 1 2.2924 -2.5296 -2.1955 36 1 3.0671 -1.6577 -3.2892 37 1 3.4621 0.7876 -4.6462 38 1 4.9148 0.4428 -3.6771 39 1 5.1202 -1.7718 -4.7742 40 1 3.6675 -1.4265 -5.7429 41 1 6.0894 -2.7183 -8.1984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353005790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:02 Heat of formation + Delta-G solvation = -155.618672 kcal Electronic energy + Delta-G solvation = -23029.465376 eV Core-core repulsion = 19521.905461 eV Total energy + Delta-G solvation = -3507.559915 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.98946 -41.02119 -38.85510 -37.13026 -36.61586 -34.98677 -33.93285 -33.58160 -31.18701 -29.06066 -26.77416 -25.91682 -25.02249 -23.29889 -22.34544 -21.61625 -20.00854 -19.24707 -19.01566 -18.48402 -17.53855 -17.30216 -16.90731 -16.51553 -16.42320 -15.86782 -15.54758 -15.15361 -15.06325 -14.83533 -14.27787 -14.22439 -13.97130 -13.86554 -13.22595 -13.07527 -13.03557 -12.92119 -12.55457 -12.51017 -12.39213 -12.22833 -12.14796 -11.82151 -11.66798 -11.58320 -11.43158 -11.38025 -11.09491 -10.58379 -10.17375 -9.53564 -8.21894 -6.31939 1.09821 1.43521 1.44014 1.54566 1.59842 2.08066 2.12725 2.42570 2.95518 3.13140 3.45887 3.64645 3.83078 3.93992 4.08659 4.31721 4.35423 4.43101 4.47565 4.53780 4.57477 4.61846 4.66646 4.88242 4.92447 4.97805 5.02773 5.09459 5.16014 5.32396 5.45353 5.50417 5.58629 5.60624 5.61521 5.80937 5.92590 6.19274 6.80980 6.95594 6.97686 7.37291 7.54058 8.90018 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.003852 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.197544 B = 7267.061776 C = 8419.968307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.082 0.918 4 C -0.119 4.119 5 C -0.099 4.099 6 C -0.094 4.094 7 H 0.118 0.882 8 C 0.496 3.504 9 O -0.538 6.538 10 O -0.512 6.512 11 C 0.121 3.879 12 N -0.618 5.618 13 C 0.703 3.297 14 O -0.632 6.632 15 N -0.735 5.735 16 C 0.160 3.840 17 C 0.025 3.975 18 C -0.546 4.546 19 H 0.059 0.941 20 C 0.009 3.991 21 N -0.926 5.926 22 Si 0.964 3.036 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.267 1.267 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.429 0.571 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.404 0.596 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.189 -4.298 18.081 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.041 3.959 3 H 0.100 0.900 4 C -0.157 4.157 5 C -0.136 4.136 6 C -0.114 4.114 7 H 0.136 0.864 8 C 0.338 3.662 9 O -0.428 6.428 10 O -0.326 6.326 11 C -0.003 4.003 12 N -0.355 5.355 13 C 0.404 3.596 14 O -0.514 6.514 15 N -0.392 5.392 16 C 0.035 3.965 17 C -0.013 4.013 18 C -0.584 4.584 19 H 0.077 0.923 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.788 3.212 23 H -0.198 1.198 24 H -0.206 1.206 25 H -0.191 1.191 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.292 0.708 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.242 0.758 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.028 0.972 40 H 0.026 0.974 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.115 -3.297 18.229 21.106 hybrid contribution 0.445 -0.875 -1.030 1.423 sum -9.670 -4.173 17.198 20.167 Atomic orbital electron populations 1.22124 0.93631 1.02901 1.02766 1.21261 0.95040 0.96691 0.82955 0.90030 1.21919 1.01697 0.94590 0.97470 1.21447 1.01647 0.94958 0.95555 1.21456 1.04452 0.86750 0.98707 0.86404 1.23248 0.75391 0.89699 0.77825 1.90716 1.36754 1.75596 1.39758 1.84556 1.71151 1.28657 1.48232 1.21576 1.02292 0.79505 0.96913 1.47338 1.58601 1.08519 1.21084 1.16038 0.78440 0.84804 0.80294 1.90853 1.66986 1.13908 1.79670 1.45452 1.54443 1.12870 1.26401 1.21095 0.92156 0.94989 0.88229 1.19120 0.95477 0.94239 0.92459 1.21456 1.31635 0.95780 1.09567 0.92310 1.25833 0.97600 0.95661 0.99866 1.70052 1.45824 1.08852 1.31807 0.85466 0.78951 0.78803 0.77955 1.19767 1.20566 1.19120 0.89202 0.93894 0.91277 0.91683 0.87467 0.89990 0.90015 0.70837 0.89296 0.89083 0.75843 0.93895 0.93661 0.97229 0.97403 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.02 71.98 0.65 -1.92 16 2 C 0.14 2.96 3.19 44.97 0.14 3.10 16 3 H 0.08 2.10 7.04 -2.39 -0.02 2.08 16 4 C -0.12 -1.74 5.55 30.67 0.17 -1.57 16 5 C -0.10 -1.41 4.25 30.62 0.13 -1.28 16 6 C -0.09 -1.55 2.78 -11.46 -0.03 -1.58 16 7 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 8 C 0.50 8.72 7.63 71.23 0.54 9.26 16 9 O -0.54 -12.01 16.74 21.97 0.37 -11.64 16 10 O -0.51 -7.57 13.35 -51.45 -0.69 -8.26 16 11 C 0.12 2.32 5.23 86.36 0.45 2.77 16 12 N -0.62 -15.45 2.68 -812.90 -2.18 -17.62 16 13 C 0.70 24.59 8.30 179.05 1.49 26.07 16 14 O -0.63 -27.24 15.79 -4.00 -0.06 -27.31 16 15 N -0.73 -26.26 5.47 -478.52 -2.62 -28.88 16 16 C 0.16 6.96 5.62 86.38 0.49 7.45 16 17 C 0.02 1.24 5.09 29.85 0.15 1.39 16 18 C -0.55 -30.44 9.11 25.60 0.23 -30.21 16 19 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 20 C 0.01 0.51 5.46 84.66 0.46 0.98 16 21 N -0.93 -53.91 13.29 21.45 0.28 -53.62 16 22 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.99 5.72 -2.39 -0.01 0.98 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.08 1.13 8.07 -2.39 -0.02 1.11 16 32 H 0.08 1.15 6.49 -2.39 -0.02 1.13 16 33 H 0.43 2.81 9.10 -74.06 -0.67 2.14 16 34 H 0.09 1.48 7.48 -2.38 -0.02 1.46 16 35 H 0.09 1.83 5.56 -2.39 -0.01 1.81 16 36 H 0.40 12.53 5.93 -92.71 -0.55 11.98 16 37 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -72.56 334.12 1.84 -70.72 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.17 Total: 16.69 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 4.87 Total: 14.46 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -4.51 Total: -100.12 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -0.38 Total: -47.21 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -72.56 1.84 -70.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353005790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.902 kcal (2) G-P(sol) polarization free energy of solvation -72.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds