Wall clock time and date at job start Tue Mar 31 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.58706 * 2 1 4 4 C 1.53190 * 109.58563 * 239.71347 * 2 1 3 5 5 C 1.53034 * 109.31247 * 294.84541 * 4 2 1 6 6 C 1.53042 * 109.54249 * 298.63554 * 5 4 2 7 7 H 1.09001 * 109.49649 * 301.41531 * 6 5 4 8 8 C 1.50701 * 109.49776 * 181.31323 * 6 5 4 9 9 O 1.20821 * 120.00308 * 0.16653 * 8 6 5 10 10 O 1.34226 * 119.99761 * 180.15722 * 8 6 5 11 11 C 1.53194 * 109.31001 * 61.36451 * 6 5 4 12 12 N 1.46919 * 108.77621 * 305.36589 * 11 6 5 13 13 C 1.34772 * 120.63325 * 233.63084 * 12 11 6 14 14 O 1.21583 * 120.00247 * 174.76939 * 13 12 11 15 15 N 1.34778 * 119.99582 * 354.77141 * 13 12 11 16 16 C 1.46505 * 119.99770 * 184.97914 * 15 13 12 17 17 C 1.52997 * 109.47239 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47417 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99999 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00141 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99671 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00203 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47301 * 59.99623 * 22 20 18 24 24 H 1.48492 * 109.47169 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46766 * 300.00003 * 22 20 18 26 26 H 1.09000 * 109.47239 * 180.29045 * 1 2 3 27 27 H 1.09000 * 109.46997 * 300.28573 * 1 2 3 28 28 H 1.08991 * 109.47213 * 60.28244 * 1 2 3 29 29 H 1.09007 * 109.49538 * 174.89962 * 4 2 1 30 30 H 1.09000 * 109.49508 * 54.80260 * 4 2 1 31 31 H 1.09006 * 109.46061 * 178.61090 * 5 4 2 32 32 H 1.08999 * 109.45936 * 58.65980 * 5 4 2 33 33 H 0.96702 * 117.00140 * 180.02562 * 10 8 6 34 34 H 1.09001 * 109.58796 * 65.15829 * 11 6 5 35 35 H 1.09002 * 109.58170 * 185.57681 * 11 6 5 36 36 H 0.96997 * 120.00601 * 4.98231 * 15 13 12 37 37 H 1.09001 * 109.47578 * 300.00372 * 16 15 13 38 38 H 1.09007 * 109.46952 * 60.00379 * 16 15 13 39 39 H 1.09001 * 109.47420 * 300.00812 * 17 16 15 40 40 H 1.09007 * 109.46559 * 60.00482 * 17 16 15 41 41 H 0.97008 * 119.99556 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 6 1.6414 -2.2026 -1.1727 6 6 2.2800 -2.8465 0.0601 7 1 3.3640 -2.7474 0.0020 8 6 1.9098 -4.3063 0.1139 9 8 1.2096 -4.7841 -0.7471 10 8 2.3580 -5.0757 1.1183 11 6 1.7691 -2.1426 1.3212 12 7 2.0225 -0.7010 1.1937 13 6 2.6944 -0.0344 2.1531 14 8 2.9808 1.1363 1.9931 15 7 3.0488 -0.6656 3.2900 16 6 3.6816 0.0847 4.3777 17 6 3.9796 -0.8604 5.5433 18 6 4.6311 -0.0888 6.6619 19 1 4.8140 0.9699 6.5525 20 6 4.9938 -0.7345 7.8249 21 7 4.7706 -2.0237 7.9582 22 14 5.8007 0.2221 9.2116 23 1 4.8851 1.2980 9.6692 24 1 6.0900 -0.6954 10.3429 25 1 7.0682 0.8243 8.7254 26 1 -0.3634 -1.0276 0.0052 27 1 -0.3633 0.5183 0.8874 28 1 -0.3633 0.5094 -0.8924 29 1 3.1297 -0.6488 -1.2920 30 1 1.6075 -0.2758 -2.1371 31 1 1.9843 -2.7177 -2.0702 32 1 0.5565 -2.2801 -1.1021 33 1 2.0943 -6.0061 1.1099 34 1 0.6987 -2.3174 1.4290 35 1 2.2944 -2.5302 2.1941 36 1 2.8849 -1.6166 3.3882 37 1 4.6119 0.5268 4.0209 38 1 3.0094 0.8744 4.7135 39 1 3.0491 -1.3022 5.8999 40 1 4.6516 -1.6504 5.2078 41 1 5.0261 -2.4781 8.7764 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353005791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:06 Heat of formation + Delta-G solvation = -132.504110 kcal Electronic energy + Delta-G solvation = -23004.383281 eV Core-core repulsion = 19497.825689 eV Total energy + Delta-G solvation = -3506.557592 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06621 -39.96669 -37.76027 -36.37484 -34.93994 -33.30980 -32.92665 -32.33794 -29.41391 -28.21104 -25.17769 -24.78761 -24.12799 -21.91446 -20.98390 -20.49446 -18.89993 -18.32450 -18.07884 -16.73002 -16.56565 -16.16403 -15.74551 -15.25216 -14.93166 -14.52887 -14.23564 -14.08103 -13.96304 -13.60809 -13.28489 -13.01398 -12.71996 -12.40405 -12.34896 -12.22268 -11.81697 -11.61209 -11.36270 -11.10252 -11.08053 -10.98799 -10.85131 -10.64139 -10.58601 -10.30910 -9.89514 -9.53572 -9.26873 -8.80282 -8.46117 -8.22807 -6.08259 -4.10913 1.87180 2.61584 2.90527 3.32137 3.35918 3.39429 3.48733 4.14903 4.24159 4.42695 4.44059 4.60644 4.71867 4.86584 5.08188 5.13895 5.22590 5.27819 5.28862 5.37413 5.44988 5.59892 5.66580 5.72612 5.84604 5.91631 6.16495 6.23497 6.27418 6.40055 6.56727 6.77438 6.97954 7.12832 7.55917 7.60865 7.63846 7.90585 8.23670 8.35011 8.90671 8.96451 9.53758 11.03337 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020233 B = 0.003791 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.560154 B = 7384.651469 C = 8507.309601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.105 0.895 4 C -0.128 4.128 5 C -0.104 4.104 6 C -0.096 4.096 7 H 0.116 0.884 8 C 0.487 3.513 9 O -0.514 6.514 10 O -0.510 6.510 11 C 0.123 3.877 12 N -0.629 5.629 13 C 0.705 3.295 14 O -0.592 6.592 15 N -0.738 5.738 16 C 0.139 3.861 17 C 0.013 3.987 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.412 0.588 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.392 0.608 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 -4.329 -18.225 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 H 0.123 0.877 4 C -0.166 4.166 5 C -0.141 4.141 6 C -0.117 4.117 7 H 0.134 0.866 8 C 0.329 3.671 9 O -0.402 6.402 10 O -0.322 6.322 11 C -0.001 4.001 12 N -0.367 5.367 13 C 0.406 3.594 14 O -0.470 6.470 15 N -0.394 5.394 16 C 0.016 3.984 17 C -0.024 4.024 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.271 0.729 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.228 0.772 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.849 -3.295 -18.378 20.254 hybrid contribution 0.215 -0.888 0.882 1.269 sum -7.634 -4.183 -17.496 19.542 Atomic orbital electron populations 1.22178 0.95279 1.02218 1.02497 1.21035 0.93646 0.97722 0.82932 0.87673 1.21963 1.02021 0.94618 0.98043 1.21468 1.01523 0.95354 0.95804 1.21486 1.04214 0.86897 0.99071 0.86626 1.23314 0.76091 0.89614 0.78110 1.90718 1.35593 1.75098 1.38825 1.84582 1.71445 1.27230 1.48947 1.21426 1.01335 0.81191 0.96184 1.47321 1.60029 1.07471 1.21904 1.15936 0.78426 0.84849 0.80154 1.90879 1.60775 1.15352 1.80024 1.45750 1.65134 1.12657 1.15838 1.21618 0.95917 0.95280 0.85589 1.19319 0.97320 0.94649 0.91132 1.21010 1.39864 0.95448 0.99672 0.92274 1.24985 0.95771 0.94920 0.98540 1.69952 1.47491 1.08592 1.27297 0.86574 0.79960 0.79681 0.81329 1.20121 1.21269 1.20107 0.92332 0.92089 0.91448 0.91037 0.89990 0.90682 0.90416 0.72889 0.90822 0.88728 0.77179 0.92649 0.92804 0.96002 0.95958 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.02 37.16 0.34 -1.16 16 2 C 0.15 1.64 3.21 -67.60 -0.22 1.42 16 3 H 0.11 1.35 7.00 -51.93 -0.36 0.99 16 4 C -0.13 -1.08 5.55 -26.62 -0.15 -1.23 16 5 C -0.10 -0.87 4.25 -26.69 -0.11 -0.99 16 6 C -0.10 -0.88 2.78 -91.65 -0.25 -1.14 16 7 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 8 C 0.49 4.71 7.63 36.01 0.27 4.99 16 9 O -0.51 -6.21 16.74 -18.75 -0.31 -6.52 16 10 O -0.51 -4.17 13.35 -39.25 -0.52 -4.70 16 11 C 0.12 1.27 5.18 -3.71 -0.02 1.25 16 12 N -0.63 -8.08 2.68 -170.91 -0.46 -8.54 16 13 C 0.70 12.26 8.29 -86.92 -0.72 11.54 16 14 O -0.59 -12.47 15.77 5.29 0.08 -12.39 16 15 N -0.74 -13.09 5.47 -65.22 -0.36 -13.44 16 16 C 0.14 2.97 5.62 -4.04 -0.02 2.94 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 22 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H 0.06 0.50 5.72 -51.93 -0.30 0.20 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.08 0.66 6.49 -51.93 -0.34 0.33 16 33 H 0.41 1.69 9.10 45.56 0.41 2.10 16 34 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 35 H 0.09 1.00 5.65 -51.93 -0.29 0.71 16 36 H 0.39 6.10 5.96 -40.82 -0.24 5.86 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -33.85 334.15 -7.53 -41.38 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.27 Total: 3.46 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -1.44 Total: 4.67 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.08 Total: -47.22 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.75 Total: -23.61 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.85 -7.53 -41.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353005791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.121 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds