Wall clock time and date at job start Tue Mar 31 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.58706 * 2 1 4 4 C 1.53190 * 109.58563 * 239.71347 * 2 1 3 5 5 C 1.53034 * 109.31247 * 294.84541 * 4 2 1 6 6 C 1.53042 * 109.54249 * 298.63554 * 5 4 2 7 7 H 1.09001 * 109.49649 * 301.41531 * 6 5 4 8 8 C 1.50701 * 109.49776 * 181.31323 * 6 5 4 9 9 O 1.20821 * 120.00308 * 0.16653 * 8 6 5 10 10 O 1.34226 * 119.99761 * 180.15722 * 8 6 5 11 11 C 1.53194 * 109.31001 * 61.36451 * 6 5 4 12 12 N 1.46919 * 108.77621 * 305.36589 * 11 6 5 13 13 C 1.34772 * 120.63325 * 233.63084 * 12 11 6 14 14 O 1.21583 * 120.00247 * 174.76939 * 13 12 11 15 15 N 1.34778 * 119.99582 * 354.77141 * 13 12 11 16 16 C 1.46505 * 119.99770 * 184.97914 * 15 13 12 17 17 C 1.52997 * 109.47239 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47417 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99999 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00141 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99671 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00203 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47301 * 59.99623 * 22 20 18 24 24 H 1.48492 * 109.47169 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46766 * 300.00003 * 22 20 18 26 26 H 1.09000 * 109.47239 * 180.29045 * 1 2 3 27 27 H 1.09000 * 109.46997 * 300.28573 * 1 2 3 28 28 H 1.08991 * 109.47213 * 60.28244 * 1 2 3 29 29 H 1.09007 * 109.49538 * 174.89962 * 4 2 1 30 30 H 1.09000 * 109.49508 * 54.80260 * 4 2 1 31 31 H 1.09006 * 109.46061 * 178.61090 * 5 4 2 32 32 H 1.08999 * 109.45936 * 58.65980 * 5 4 2 33 33 H 0.96702 * 117.00140 * 180.02562 * 10 8 6 34 34 H 1.09001 * 109.58796 * 65.15829 * 11 6 5 35 35 H 1.09002 * 109.58170 * 185.57681 * 11 6 5 36 36 H 0.96997 * 120.00601 * 4.98231 * 15 13 12 37 37 H 1.09001 * 109.47578 * 300.00372 * 16 15 13 38 38 H 1.09007 * 109.46952 * 60.00379 * 16 15 13 39 39 H 1.09001 * 109.47420 * 300.00812 * 17 16 15 40 40 H 1.09007 * 109.46559 * 60.00482 * 17 16 15 41 41 H 0.97008 * 119.99556 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 6 1.6414 -2.2026 -1.1727 6 6 2.2800 -2.8465 0.0601 7 1 3.3640 -2.7474 0.0020 8 6 1.9098 -4.3063 0.1139 9 8 1.2096 -4.7841 -0.7471 10 8 2.3580 -5.0757 1.1183 11 6 1.7691 -2.1426 1.3212 12 7 2.0225 -0.7010 1.1937 13 6 2.6944 -0.0344 2.1531 14 8 2.9808 1.1363 1.9931 15 7 3.0488 -0.6656 3.2900 16 6 3.6816 0.0847 4.3777 17 6 3.9796 -0.8604 5.5433 18 6 4.6311 -0.0888 6.6619 19 1 4.8140 0.9699 6.5525 20 6 4.9938 -0.7345 7.8249 21 7 4.7706 -2.0237 7.9582 22 14 5.8007 0.2221 9.2116 23 1 4.8851 1.2980 9.6692 24 1 6.0900 -0.6954 10.3429 25 1 7.0682 0.8243 8.7254 26 1 -0.3634 -1.0276 0.0052 27 1 -0.3633 0.5183 0.8874 28 1 -0.3633 0.5094 -0.8924 29 1 3.1297 -0.6488 -1.2920 30 1 1.6075 -0.2758 -2.1371 31 1 1.9843 -2.7177 -2.0702 32 1 0.5565 -2.2801 -1.1021 33 1 2.0943 -6.0061 1.1099 34 1 0.6987 -2.3174 1.4290 35 1 2.2944 -2.5302 2.1941 36 1 2.8849 -1.6166 3.3882 37 1 4.6119 0.5268 4.0209 38 1 3.0094 0.8744 4.7135 39 1 3.0491 -1.3022 5.8999 40 1 4.6516 -1.6504 5.2078 41 1 5.0261 -2.4781 8.7764 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353005791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:05 Heat of formation + Delta-G solvation = -155.879134 kcal Electronic energy + Delta-G solvation = -23005.396898 eV Core-core repulsion = 19497.825689 eV Total energy + Delta-G solvation = -3507.571209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.98888 -41.02360 -38.85608 -37.13327 -36.61182 -34.98436 -33.93694 -33.58692 -31.18524 -29.06182 -26.77593 -25.91682 -25.01622 -23.29796 -22.34293 -21.61710 -20.01495 -19.23723 -19.01624 -18.48110 -17.55765 -17.30291 -16.87910 -16.49626 -16.48341 -15.86180 -15.56169 -15.16592 -15.01131 -14.81236 -14.28097 -14.26237 -13.96089 -13.86871 -13.23348 -13.07966 -13.03733 -12.90910 -12.55729 -12.52128 -12.39305 -12.23182 -12.14654 -11.81109 -11.67069 -11.58360 -11.44342 -11.38049 -11.09675 -10.57877 -10.17430 -9.53568 -8.21775 -6.31931 1.09568 1.43479 1.45882 1.53090 1.59569 2.03921 2.16654 2.42627 2.95936 3.13158 3.46160 3.64056 3.83364 3.93989 4.08815 4.31202 4.35107 4.43099 4.47440 4.53822 4.57281 4.62208 4.66435 4.88099 4.92326 4.97715 5.02510 5.09238 5.15993 5.32224 5.45494 5.50183 5.58618 5.60375 5.61338 5.80815 5.92725 6.19202 6.80742 6.95601 6.97407 7.37217 7.54062 8.89907 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020233 B = 0.003791 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.560154 B = 7384.651469 C = 8507.309601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.082 0.918 4 C -0.118 4.118 5 C -0.099 4.099 6 C -0.093 4.093 7 H 0.118 0.882 8 C 0.496 3.504 9 O -0.538 6.538 10 O -0.512 6.512 11 C 0.120 3.880 12 N -0.619 5.619 13 C 0.703 3.297 14 O -0.632 6.632 15 N -0.735 5.735 16 C 0.160 3.840 17 C 0.025 3.975 18 C -0.547 4.547 19 H 0.059 0.941 20 C 0.009 3.991 21 N -0.926 5.926 22 Si 0.964 3.036 23 H -0.269 1.269 24 H -0.281 1.281 25 H -0.269 1.269 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.430 0.570 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.404 0.596 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.449 -4.687 -19.007 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.100 0.900 4 C -0.157 4.157 5 C -0.136 4.136 6 C -0.113 4.113 7 H 0.136 0.864 8 C 0.338 3.662 9 O -0.428 6.428 10 O -0.326 6.326 11 C -0.003 4.003 12 N -0.356 5.356 13 C 0.404 3.596 14 O -0.514 6.514 15 N -0.392 5.392 16 C 0.035 3.965 17 C -0.013 4.013 18 C -0.585 4.585 19 H 0.077 0.923 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.788 3.212 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.194 1.194 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.292 0.708 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.241 0.759 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.304 -3.706 -19.192 21.237 hybrid contribution 0.322 -0.837 1.089 1.411 sum -7.982 -4.543 -18.103 20.299 Atomic orbital electron populations 1.22131 0.93578 1.02948 1.02801 1.21266 0.94933 0.96779 0.83031 0.89978 1.21909 1.01671 0.94578 0.97493 1.21448 1.01648 0.94961 0.95563 1.21453 1.04430 0.86754 0.98694 0.86404 1.23240 0.75401 0.89686 0.77825 1.90716 1.36736 1.75589 1.39770 1.84551 1.71143 1.28671 1.48233 1.21576 1.02325 0.79502 0.96904 1.47333 1.58459 1.08531 1.21235 1.16032 0.78547 0.84445 0.80533 1.90849 1.62441 1.17231 1.80895 1.45454 1.65233 1.13031 1.15431 1.21094 0.95436 0.94373 0.85565 1.19116 0.95991 0.94468 0.91695 1.21431 1.40372 0.95838 1.00907 0.92294 1.25838 0.96206 0.95862 1.01052 1.70055 1.48306 1.10026 1.28139 0.85521 0.79113 0.78413 0.78135 1.19384 1.20606 1.19379 0.91271 0.93856 0.89154 0.91726 0.87513 0.89981 0.90028 0.70823 0.89319 0.89078 0.75856 0.93775 0.93780 0.97327 0.97333 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.02 71.98 0.65 -1.92 16 2 C 0.14 2.95 3.21 44.97 0.14 3.09 16 3 H 0.08 2.12 7.00 -2.39 -0.02 2.10 16 4 C -0.12 -1.74 5.55 30.67 0.17 -1.57 16 5 C -0.10 -1.41 4.25 30.62 0.13 -1.28 16 6 C -0.09 -1.53 2.78 -11.46 -0.03 -1.56 16 7 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 8 C 0.50 8.65 7.63 71.24 0.54 9.19 16 9 O -0.54 -11.96 16.74 21.98 0.37 -11.59 16 10 O -0.51 -7.44 13.35 -51.38 -0.69 -8.13 16 11 C 0.12 2.31 5.18 86.36 0.45 2.76 16 12 N -0.62 -15.45 2.68 -812.91 -2.18 -17.63 16 13 C 0.70 24.59 8.29 179.06 1.49 26.08 16 14 O -0.63 -27.21 15.77 -3.98 -0.06 -27.27 16 15 N -0.73 -26.28 5.47 -478.53 -2.62 -28.90 16 16 C 0.16 6.97 5.62 86.38 0.49 7.46 16 17 C 0.02 1.25 5.09 29.85 0.15 1.40 16 18 C -0.55 -30.52 9.11 25.60 0.23 -30.29 16 19 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 20 C 0.01 0.52 5.46 84.65 0.46 0.98 16 21 N -0.93 -53.95 13.29 21.45 0.28 -53.67 16 22 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 26 H 0.07 1.00 5.72 -2.39 -0.01 0.98 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.12 8.07 -2.38 -0.02 1.10 16 32 H 0.08 1.14 6.49 -2.39 -0.02 1.13 16 33 H 0.43 2.72 9.10 -74.06 -0.67 2.04 16 34 H 0.09 1.49 7.48 -2.39 -0.02 1.47 16 35 H 0.09 1.83 5.65 -2.39 -0.01 1.81 16 36 H 0.40 12.53 5.96 -92.71 -0.55 11.98 16 37 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 41 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 Total: -1.00 -72.52 334.15 1.84 -70.69 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -0.17 Total: 16.71 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 4.87 Total: 14.34 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -4.51 Total: -100.20 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.38 Total: -46.99 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -72.52 1.84 -70.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353005791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.193 kcal (2) G-P(sol) polarization free energy of solvation -72.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds