Wall clock time and date at job start Tue Mar 31 2020 05:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00230 * 2 1 4 4 H 1.48494 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46611 * 299.99661 * 3 2 1 6 6 H 1.48497 * 109.47008 * 59.99104 * 3 2 1 7 7 C 1.37872 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00472 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.34768 * 119.99938 * 180.02562 * 10 9 7 12 12 O 1.21590 * 120.00238 * 355.01036 * 11 10 9 13 13 N 1.34775 * 120.00375 * 175.01432 * 11 10 9 14 14 C 1.46928 * 120.62778 * 5.60998 * 13 11 10 15 15 C 1.53192 * 108.77808 * 126.36510 * 14 13 11 16 16 C 1.53046 * 109.31083 * 54.63546 * 15 14 13 17 17 C 1.53035 * 109.53650 * 298.63615 * 16 15 14 18 18 C 1.46927 * 120.63633 * 185.32799 * 13 11 10 19 19 H 1.08994 * 109.58480 * 113.84168 * 18 13 11 20 20 C 1.53003 * 109.58235 * 353.41941 * 18 13 11 21 21 C 1.52997 * 109.47012 * 180.02562 * 20 18 13 22 22 C 1.50700 * 109.47487 * 175.09323 * 21 20 18 23 23 O 1.20830 * 119.99438 * 359.97438 * 22 21 20 24 24 O 1.34227 * 120.00078 * 180.02562 * 22 21 20 25 25 H 0.97006 * 119.99870 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46388 * 59.99827 * 9 7 2 27 27 H 1.08998 * 109.47140 * 300.00617 * 9 7 2 28 28 H 0.96998 * 119.99665 * 359.97438 * 10 9 7 29 29 H 1.09000 * 109.58603 * 246.15880 * 14 13 11 30 30 H 1.09003 * 109.58532 * 6.43901 * 14 13 11 31 31 H 1.09001 * 109.49817 * 174.58376 * 15 14 13 32 32 H 1.08992 * 109.50086 * 294.68850 * 15 14 13 33 33 H 1.09003 * 109.46016 * 58.65489 * 16 15 14 34 34 H 1.08993 * 109.46117 * 178.62365 * 16 15 14 35 35 H 1.09003 * 109.49788 * 181.31734 * 17 16 15 36 36 H 1.08998 * 109.50279 * 301.41155 * 17 16 15 37 37 H 1.08998 * 109.46877 * 299.99650 * 20 18 13 38 38 H 1.09000 * 109.47309 * 59.99748 * 20 18 13 39 39 H 1.09008 * 109.47019 * 295.09185 * 21 20 18 40 40 H 1.09001 * 109.47585 * 55.08605 * 21 20 18 41 41 H 0.96706 * 116.99682 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5620 -5.1069 0.0911 13 7 2.6252 -5.9063 -0.1014 14 6 4.0736 -5.6597 -0.0887 15 6 4.7124 -6.5292 0.9988 16 6 4.3258 -7.9922 0.7691 17 6 2.8056 -8.1406 0.8628 18 6 2.1453 -7.2898 -0.2206 19 1 2.4080 -7.6845 -1.2020 20 6 0.6261 -7.3229 -0.0412 21 6 0.1292 -8.7646 -0.1651 22 6 -1.3477 -8.8141 0.1305 23 8 -1.9417 -7.8003 0.4119 24 8 -2.0029 -9.9846 0.0822 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6239 -2.5567 0.8902 28 1 3.1566 -3.4355 0.0002 29 1 4.4969 -5.9187 -1.0593 30 1 4.2633 -4.6075 0.1235 31 1 5.7968 -6.4283 0.9550 32 1 4.3558 -6.2082 1.9774 33 1 4.6610 -8.3053 -0.2198 34 1 4.7989 -8.6161 1.5272 35 1 2.5328 -9.1865 0.7224 36 1 2.4669 -7.8043 1.8428 37 1 0.3681 -6.9334 0.9436 38 1 0.1561 -6.7088 -0.8093 39 1 0.3093 -9.1252 -1.1779 40 1 0.6634 -9.3954 0.5455 41 1 -2.9494 -9.9663 0.2798 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356632047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:35 Heat of formation + Delta-G solvation = -118.364356 kcal Electronic energy + Delta-G solvation = -23152.332949 eV Core-core repulsion = 19646.388503 eV Total energy + Delta-G solvation = -3505.944446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.46822 -39.87007 -37.24715 -36.13278 -34.81079 -33.58132 -32.67667 -31.91152 -29.93041 -27.29251 -25.66812 -24.34878 -22.94020 -21.87785 -20.83672 -20.40846 -19.16292 -18.09271 -17.48875 -16.47342 -16.13730 -15.96838 -15.57569 -15.20370 -14.63309 -14.49387 -14.31191 -13.81836 -13.68190 -13.33080 -13.06294 -12.85768 -12.72252 -12.28067 -11.89157 -11.80828 -11.75630 -11.46757 -11.22244 -11.01760 -10.89242 -10.86954 -10.78287 -10.58548 -10.53832 -10.40832 -10.21505 -9.30066 -8.68356 -8.59744 -8.24669 -7.66310 -6.11306 -4.17782 2.32299 2.99614 3.26265 3.27369 3.33844 3.37053 3.95197 4.34232 4.57525 4.74882 4.80056 4.90204 5.01205 5.03755 5.14185 5.22807 5.24706 5.29747 5.44862 5.48788 5.64069 5.70880 5.76322 5.81485 5.85980 5.97791 5.99683 6.24179 6.51772 6.53544 6.69838 7.04529 7.20410 7.57249 7.62518 7.63807 7.90987 7.97993 8.07283 8.81364 8.96288 9.39183 9.53761 10.98920 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.004352 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.136591 B = 6432.180827 C = 7979.656622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.266 3.734 10 N -0.731 5.731 11 C 0.692 3.308 12 O -0.582 6.582 13 N -0.636 5.636 14 C 0.114 3.886 15 C -0.136 4.136 16 C -0.117 4.117 17 C -0.138 4.138 18 C 0.169 3.831 19 H 0.065 0.935 20 C -0.097 4.097 21 C -0.123 4.123 22 C 0.471 3.529 23 O -0.496 6.496 24 O -0.527 6.527 25 H 0.265 0.735 26 H 0.023 0.977 27 H 0.025 0.975 28 H 0.384 0.616 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.823 -20.211 -0.115 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.385 5.385 11 C 0.394 3.606 12 O -0.461 6.461 13 N -0.375 5.375 14 C -0.010 4.010 15 C -0.174 4.174 16 C -0.154 4.154 17 C -0.176 4.176 18 C 0.065 3.935 19 H 0.083 0.917 20 C -0.134 4.134 21 C -0.161 4.161 22 C 0.312 3.688 23 O -0.382 6.382 24 O -0.340 6.340 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.218 0.782 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 7.005 -19.877 -0.076 21.076 hybrid contribution 0.335 1.017 0.163 1.083 sum 7.339 -18.860 0.086 20.238 Atomic orbital electron populations 1.70000 1.06068 1.27079 1.49069 1.24941 0.94887 0.99348 0.94833 0.86380 0.79797 0.83108 0.77718 1.19688 1.20830 1.20836 1.21258 0.93206 0.90508 1.52921 0.92049 1.18967 0.87809 0.81109 0.97595 1.45971 1.10723 1.04570 1.77222 1.16188 0.84994 0.80986 0.78449 1.90967 1.14372 1.82736 1.57996 1.47313 1.05219 1.05458 1.79545 1.21551 0.80796 1.00106 0.98574 1.21928 1.00272 0.95504 0.99728 1.21482 0.95803 0.96381 1.01748 1.22062 0.95604 0.99765 1.00203 1.20826 0.94184 0.80926 0.97553 0.91700 1.22078 0.92891 0.90976 1.07481 1.21698 0.87812 1.02265 1.04356 1.23615 0.91315 0.80361 0.73509 1.90827 1.69221 1.35271 1.42904 1.84534 1.28915 1.36948 1.83589 0.92557 0.95861 0.95672 0.78177 0.91862 0.90044 0.91005 0.91406 0.91891 0.91963 0.90894 0.91292 0.89233 0.88134 0.88258 0.88191 0.73584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.27 7.27 5.43 -5.19 -0.03 7.25 16 10 N -0.73 -16.04 5.46 -66.41 -0.36 -16.40 16 11 C 0.69 14.45 8.21 -86.93 -0.71 13.73 16 12 O -0.58 -14.23 11.75 5.29 0.06 -14.17 16 13 N -0.64 -9.80 2.98 -171.16 -0.51 -10.31 16 14 C 0.11 1.35 6.39 -3.71 -0.02 1.33 16 15 C -0.14 -1.32 6.08 -26.61 -0.16 -1.48 16 16 C -0.12 -1.00 5.89 -26.69 -0.16 -1.15 16 17 C -0.14 -1.36 4.84 -26.84 -0.13 -1.49 16 18 C 0.17 2.16 3.00 -67.82 -0.20 1.96 16 19 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 20 C -0.10 -1.47 2.48 -26.73 -0.07 -1.53 16 21 C -0.12 -1.35 5.60 -27.88 -0.16 -1.50 16 22 C 0.47 6.24 8.33 36.01 0.30 6.54 16 23 O -0.50 -9.08 16.68 -18.75 -0.31 -9.39 16 24 O -0.53 -5.22 13.42 -39.25 -0.53 -5.74 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.38 7.32 5.81 -40.82 -0.24 7.08 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.01 5.65 -51.93 -0.29 0.71 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.55 6.65 -51.93 -0.35 0.21 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.67 6.85 -51.93 -0.36 1.32 16 38 H 0.10 1.91 6.44 -51.93 -0.33 1.58 16 39 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 40 H 0.10 0.85 6.32 -51.93 -0.33 0.52 16 41 H 0.41 2.48 9.10 45.56 0.41 2.89 16 LS Contribution 329.57 15.07 4.97 4.97 Total: -1.00 -35.68 329.57 -7.97 -43.64 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.24 Total: 7.07 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -1.76 Total: 10.08 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.14 Total: -52.55 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.78 Total: -29.30 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.68 -7.97 -43.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356632047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.721 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds