Wall clock time and date at job start Tue Mar 31 2020 05:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00230 * 2 1 4 4 H 1.48494 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46611 * 299.99661 * 3 2 1 6 6 H 1.48497 * 109.47008 * 59.99104 * 3 2 1 7 7 C 1.37872 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00472 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.34768 * 119.99938 * 180.02562 * 10 9 7 12 12 O 1.21590 * 120.00238 * 355.01036 * 11 10 9 13 13 N 1.34775 * 120.00375 * 175.01432 * 11 10 9 14 14 C 1.46928 * 120.62778 * 5.60998 * 13 11 10 15 15 C 1.53192 * 108.77808 * 126.36510 * 14 13 11 16 16 C 1.53046 * 109.31083 * 54.63546 * 15 14 13 17 17 C 1.53035 * 109.53650 * 298.63615 * 16 15 14 18 18 C 1.46927 * 120.63633 * 185.32799 * 13 11 10 19 19 H 1.08994 * 109.58480 * 113.84168 * 18 13 11 20 20 C 1.53003 * 109.58235 * 353.41941 * 18 13 11 21 21 C 1.52997 * 109.47012 * 180.02562 * 20 18 13 22 22 C 1.50700 * 109.47487 * 175.09323 * 21 20 18 23 23 O 1.20830 * 119.99438 * 359.97438 * 22 21 20 24 24 O 1.34227 * 120.00078 * 180.02562 * 22 21 20 25 25 H 0.97006 * 119.99870 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46388 * 59.99827 * 9 7 2 27 27 H 1.08998 * 109.47140 * 300.00617 * 9 7 2 28 28 H 0.96998 * 119.99665 * 359.97438 * 10 9 7 29 29 H 1.09000 * 109.58603 * 246.15880 * 14 13 11 30 30 H 1.09003 * 109.58532 * 6.43901 * 14 13 11 31 31 H 1.09001 * 109.49817 * 174.58376 * 15 14 13 32 32 H 1.08992 * 109.50086 * 294.68850 * 15 14 13 33 33 H 1.09003 * 109.46016 * 58.65489 * 16 15 14 34 34 H 1.08993 * 109.46117 * 178.62365 * 16 15 14 35 35 H 1.09003 * 109.49788 * 181.31734 * 17 16 15 36 36 H 1.08998 * 109.50279 * 301.41155 * 17 16 15 37 37 H 1.08998 * 109.46877 * 299.99650 * 20 18 13 38 38 H 1.09000 * 109.47309 * 59.99748 * 20 18 13 39 39 H 1.09008 * 109.47019 * 295.09185 * 21 20 18 40 40 H 1.09001 * 109.47585 * 55.08605 * 21 20 18 41 41 H 0.96706 * 116.99682 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5620 -5.1069 0.0911 13 7 2.6252 -5.9063 -0.1014 14 6 4.0736 -5.6597 -0.0887 15 6 4.7124 -6.5292 0.9988 16 6 4.3258 -7.9922 0.7691 17 6 2.8056 -8.1406 0.8628 18 6 2.1453 -7.2898 -0.2206 19 1 2.4080 -7.6845 -1.2020 20 6 0.6261 -7.3229 -0.0412 21 6 0.1292 -8.7646 -0.1651 22 6 -1.3477 -8.8141 0.1305 23 8 -1.9417 -7.8003 0.4119 24 8 -2.0029 -9.9846 0.0822 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6239 -2.5567 0.8902 28 1 3.1566 -3.4355 0.0002 29 1 4.4969 -5.9187 -1.0593 30 1 4.2633 -4.6075 0.1235 31 1 5.7968 -6.4283 0.9550 32 1 4.3558 -6.2082 1.9774 33 1 4.6610 -8.3053 -0.2198 34 1 4.7989 -8.6161 1.5272 35 1 2.5328 -9.1865 0.7224 36 1 2.4669 -7.8043 1.8428 37 1 0.3681 -6.9334 0.9436 38 1 0.1561 -6.7088 -0.8093 39 1 0.3093 -9.1252 -1.1779 40 1 0.6634 -9.3954 0.5455 41 1 -2.9494 -9.9663 0.2798 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356632047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:34 Heat of formation + Delta-G solvation = -145.580936 kcal Electronic energy + Delta-G solvation = -23153.513148 eV Core-core repulsion = 19646.388503 eV Total energy + Delta-G solvation = -3507.124646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.74329 -41.06020 -38.58239 -37.15053 -36.42903 -35.20211 -34.13178 -33.47277 -30.88800 -29.25608 -26.89931 -25.42732 -24.70884 -23.10679 -21.97803 -21.51251 -20.62482 -19.31260 -18.83567 -17.89206 -17.59762 -17.22541 -17.05417 -16.67195 -16.32937 -15.50460 -15.26745 -15.18034 -15.05451 -14.63875 -14.28086 -14.12082 -14.00286 -13.77375 -13.57699 -13.26604 -12.93151 -12.78333 -12.75716 -12.53949 -12.21614 -12.14990 -11.85935 -11.79383 -11.60448 -11.49540 -11.46404 -11.33871 -10.80681 -10.21965 -9.84968 -9.28933 -8.28885 -6.46078 1.27277 1.41922 1.44284 1.57465 1.80785 2.21135 2.29958 2.38536 3.05884 3.22717 3.81896 3.87233 3.97209 4.01792 4.14022 4.28023 4.34093 4.37649 4.57161 4.63143 4.73618 4.84089 4.91658 5.00890 5.05495 5.15195 5.17336 5.26656 5.26820 5.33567 5.47671 5.48717 5.56431 5.65399 5.75781 5.85534 5.91638 6.16949 6.66642 7.04366 7.23538 7.26351 7.80914 8.83908 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.004352 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.136591 B = 6432.180827 C = 7979.656622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.251 1.251 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.288 3.712 10 N -0.728 5.728 11 C 0.684 3.316 12 O -0.627 6.627 13 N -0.627 5.627 14 C 0.104 3.896 15 C -0.132 4.132 16 C -0.112 4.112 17 C -0.132 4.132 18 C 0.163 3.837 19 H 0.097 0.903 20 C -0.087 4.087 21 C -0.113 4.113 22 C 0.474 3.526 23 O -0.561 6.561 24 O -0.511 6.511 25 H 0.268 0.732 26 H -0.018 1.018 27 H -0.021 1.021 28 H 0.399 0.601 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.523 -22.295 -0.675 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.175 1.175 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.101 0.899 9 C 0.165 3.835 10 N -0.385 5.385 11 C 0.386 3.614 12 O -0.509 6.509 13 N -0.365 5.365 14 C -0.018 4.018 15 C -0.170 4.170 16 C -0.149 4.149 17 C -0.170 4.170 18 C 0.060 3.940 19 H 0.114 0.886 20 C -0.125 4.125 21 C -0.151 4.151 22 C 0.319 3.681 23 O -0.452 6.452 24 O -0.325 6.325 25 H 0.077 0.923 26 H 0.000 1.000 27 H -0.003 1.003 28 H 0.237 0.763 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 10.776 -22.066 -0.642 24.565 hybrid contribution -0.888 1.519 0.330 1.790 sum 9.889 -20.547 -0.312 22.805 Atomic orbital electron populations 1.70175 1.08412 1.28489 1.50053 1.26110 0.95768 1.04001 0.93801 0.85067 0.79084 0.77057 0.77713 1.17451 1.20307 1.20460 1.21618 0.94201 0.90479 1.52818 0.89936 1.18333 0.88102 0.83619 0.93484 1.45585 1.10616 1.04159 1.78123 1.16470 0.85141 0.81599 0.78221 1.90982 1.16834 1.83552 1.59578 1.47392 1.06222 1.05212 1.77706 1.21898 0.78382 1.00428 1.01085 1.21927 1.01585 0.96010 0.97500 1.21502 0.94287 0.95475 1.03672 1.22056 0.96694 1.00731 0.97544 1.21178 0.92502 0.79801 1.00491 0.88564 1.21659 0.94851 0.93084 1.02928 1.21683 0.86347 0.99598 1.07425 1.24114 0.92271 0.80027 0.71738 1.90825 1.70676 1.37622 1.46101 1.84487 1.30415 1.34850 1.82698 0.92273 1.00046 1.00298 0.76329 0.89136 0.91060 0.88228 0.93432 0.89767 0.89972 0.87332 0.93565 0.94021 0.93134 0.84710 0.84473 0.71582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.45 13.29 21.45 0.28 -58.17 16 2 C 0.00 0.14 5.46 84.65 0.46 0.61 16 3 Si 0.99 43.46 29.54 68.60 2.03 45.48 16 4 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.55 -31.42 9.28 25.60 0.24 -31.18 16 8 H 0.08 4.23 7.60 -2.91 -0.02 4.21 16 9 C 0.29 16.91 5.43 85.63 0.47 17.38 16 10 N -0.73 -33.77 5.46 -482.30 -2.63 -36.40 16 11 C 0.68 30.37 8.21 179.06 1.47 31.84 16 12 O -0.63 -33.74 11.75 -4.00 -0.05 -33.79 16 13 N -0.63 -19.28 2.98 -813.69 -2.42 -21.70 16 14 C 0.10 2.27 6.39 86.36 0.55 2.82 16 15 C -0.13 -2.14 6.08 30.67 0.19 -1.95 16 16 C -0.11 -1.38 5.89 30.62 0.18 -1.20 16 17 C -0.13 -2.18 4.84 30.53 0.15 -2.03 16 18 C 0.16 3.91 3.00 44.83 0.13 4.04 16 19 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 20 C -0.09 -2.75 2.48 30.59 0.08 -2.68 16 21 C -0.11 -2.28 5.60 29.85 0.17 -2.12 16 22 C 0.47 12.59 8.33 71.24 0.59 13.18 16 23 O -0.56 -22.06 16.68 21.95 0.37 -21.69 16 24 O -0.51 -9.27 13.42 -51.39 -0.69 -9.96 16 25 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 26 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 27 H -0.02 -1.40 8.14 -2.39 -0.02 -1.42 16 28 H 0.40 15.57 5.81 -92.71 -0.54 15.04 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.68 5.65 -2.39 -0.01 1.67 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 1.06 6.65 -2.39 -0.02 1.04 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.04 1.69 6.85 -2.39 -0.02 1.68 16 38 H 0.05 2.09 6.44 -2.39 -0.02 2.07 16 39 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.14 1.79 6.32 -2.39 -0.02 1.78 16 41 H 0.42 4.68 9.10 -74.05 -0.67 4.01 16 Total: -1.00 -87.56 329.57 1.40 -86.15 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -0.16 Total: 21.37 kcal Atomic # 6 Polarization: 24.04 SS G_CDS: 4.67 Total: 28.71 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -4.77 Total: -116.28 kcal Atomic # 8 Polarization: -65.08 SS G_CDS: -0.37 Total: -65.45 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -87.56 1.40 -86.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356632047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.427 kcal (2) G-P(sol) polarization free energy of solvation -87.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds