Wall clock time and date at job start Tue Mar 31 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21281 * 120.00163 * 2 1 4 4 N 1.34785 * 119.99761 * 179.97438 * 2 1 3 5 5 C 1.46492 * 119.99505 * 179.97438 * 4 2 1 6 6 H 1.08999 * 109.47883 * 325.00306 * 5 4 2 7 7 C 1.53003 * 109.47245 * 85.00589 * 5 4 2 8 8 C 1.50698 * 109.47077 * 205.00217 * 5 4 2 9 9 O 1.20827 * 120.00138 * 0.02562 * 8 5 4 10 10 O 1.34237 * 120.00275 * 180.02562 * 8 5 4 11 11 C 1.45201 * 117.00039 * 179.97438 * 10 8 5 12 12 C 1.53081 * 109.44761 * 89.79037 * 11 10 8 13 13 C 1.53190 * 109.29209 * 181.24261 * 12 11 10 14 14 N 1.46921 * 108.89311 * 305.57883 * 13 12 11 15 15 C 1.36940 * 120.63187 * 233.51481 * 14 13 12 16 16 H 1.08001 * 120.00319 * 152.61971 * 15 14 13 17 17 C 1.38813 * 119.99903 * 332.62203 * 15 14 13 18 18 N 1.31624 * 120.00070 * 159.34992 * 17 15 14 19 19 Si 1.86800 * 120.00077 * 339.35529 * 17 15 14 20 20 H 1.48494 * 109.47321 * 92.87851 * 19 17 15 21 21 H 1.48501 * 109.47194 * 212.88430 * 19 17 15 22 22 H 1.48509 * 109.46983 * 332.87654 * 19 17 15 23 23 C 1.46923 * 118.74178 * 53.54201 * 14 13 12 24 24 C 1.53035 * 109.46027 * 210.00034 * 11 10 8 25 25 H 1.08997 * 109.47134 * 240.00009 * 1 2 3 26 26 H 1.09001 * 109.46738 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46788 * 120.00226 * 1 2 3 28 28 H 0.96994 * 119.99872 * 0.02562 * 4 2 1 29 29 H 1.09000 * 109.47627 * 179.97438 * 7 5 4 30 30 H 1.09002 * 109.46810 * 299.99806 * 7 5 4 31 31 H 1.08999 * 109.46910 * 59.99122 * 7 5 4 32 32 H 1.08996 * 109.46004 * 329.97968 * 11 10 8 33 33 H 1.08992 * 109.38800 * 61.36680 * 12 11 10 34 34 H 1.09002 * 109.61927 * 301.25958 * 12 11 10 35 35 H 1.08999 * 109.58729 * 185.71870 * 13 12 11 36 36 H 1.09004 * 109.58886 * 65.43758 * 13 12 11 37 37 H 0.97001 * 119.99914 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.59094 * 66.17180 * 23 14 13 39 39 H 1.09001 * 109.59077 * 186.46452 * 23 14 13 40 40 H 1.09002 * 109.49848 * 58.66798 * 24 11 10 41 41 H 1.08999 * 109.49849 * 298.56607 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0090 -0.3258 -0.5901 7 6 4.1564 -1.0407 1.4367 8 6 4.1480 -2.4553 -0.5999 9 8 3.3627 -3.2877 -0.9876 10 8 5.4677 -2.6779 -0.7035 11 6 5.8792 -3.9404 -1.2908 12 6 6.0185 -3.7761 -2.8064 13 6 6.4224 -5.1177 -3.4259 14 7 7.6351 -5.6056 -2.7550 15 6 8.7432 -5.9514 -3.4815 16 1 9.7246 -5.8805 -3.0363 17 6 8.6051 -6.3930 -4.7902 18 7 9.6297 -6.3389 -5.6147 19 14 6.9650 -7.0640 -5.3814 20 1 6.1738 -5.9675 -5.9951 21 1 7.2002 -8.1288 -6.3895 22 1 6.2173 -7.6294 -4.2296 23 6 7.6361 -5.7160 -1.2900 24 6 7.2220 -4.3670 -0.6936 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6959 -2.0073 0.0005 29 1 5.2464 -1.0411 1.4364 30 1 3.7932 -0.1090 1.8706 31 1 3.7932 -1.8821 2.0268 32 1 5.1287 -4.7017 -1.0778 33 1 6.7846 -3.0311 -3.0207 34 1 5.0671 -3.4522 -3.2284 35 1 6.6217 -4.9840 -4.4891 36 1 5.6161 -5.8391 -3.2932 37 1 9.5330 -6.6471 -6.5293 38 1 6.9280 -6.4849 -0.9809 39 1 8.6357 -5.9794 -0.9440 40 1 7.1256 -4.4616 0.3880 41 1 7.9787 -3.6181 -0.9277 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357599063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:29 Heat of formation + Delta-G solvation = -127.101580 kcal Electronic energy + Delta-G solvation = -22975.045618 eV Core-core repulsion = 19468.722298 eV Total energy + Delta-G solvation = -3506.323321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.04910 -40.65540 -39.36117 -37.57569 -36.23523 -34.66777 -32.86361 -32.20787 -32.09429 -29.81397 -27.31577 -25.86273 -24.54451 -23.83000 -22.12422 -21.48959 -21.23596 -19.07038 -18.98137 -18.36195 -17.68904 -17.28889 -17.07781 -16.29721 -16.26950 -15.99614 -15.44716 -15.12672 -15.08150 -14.75398 -14.47150 -14.28712 -13.97815 -13.91622 -13.54702 -13.49816 -13.27051 -13.02607 -12.93176 -12.71995 -12.60179 -12.36774 -12.19825 -12.09898 -11.71059 -11.62942 -11.48156 -11.16539 -11.09012 -10.75618 -10.40110 -9.03663 -8.19824 -5.52952 0.95203 1.21651 1.27194 1.38587 1.46977 1.57746 2.23243 2.38090 2.98760 3.21309 3.37262 3.65276 3.72102 3.81178 3.91300 4.02028 4.03853 4.18891 4.34741 4.51135 4.54621 4.57527 4.65977 4.67807 4.68416 4.74305 4.79842 4.87656 5.01232 5.06178 5.07154 5.12824 5.20939 5.25989 5.47183 5.82968 6.10103 6.38719 6.50882 6.85412 7.10471 7.56377 7.96328 8.99686 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030831 B = 0.003613 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.951329 B = 7748.406946 C = 8212.662935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.513 3.487 3 O -0.589 6.589 4 N -0.714 5.714 5 C 0.153 3.847 6 H 0.118 0.882 7 C -0.150 4.150 8 C 0.461 3.539 9 O -0.525 6.525 10 O -0.344 6.344 11 C 0.104 3.896 12 C -0.141 4.141 13 C 0.127 3.873 14 N -0.620 5.620 15 C -0.250 4.250 16 H 0.060 0.940 17 C -0.033 4.033 18 N -0.954 5.954 19 Si 0.940 3.060 20 H -0.278 1.278 21 H -0.308 1.308 22 H -0.260 1.260 23 C 0.145 3.855 24 C -0.118 4.118 25 H 0.115 0.885 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.419 0.581 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.512 9.847 15.952 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.303 3.697 3 O -0.469 6.469 4 N -0.370 5.370 5 C 0.046 3.954 6 H 0.136 0.864 7 C -0.208 4.208 8 C 0.304 3.696 9 O -0.414 6.414 10 O -0.259 6.259 11 C 0.050 3.950 12 C -0.180 4.180 13 C 0.001 3.999 14 N -0.345 5.345 15 C -0.379 4.379 16 H 0.078 0.922 17 C -0.228 4.228 18 N -0.600 5.600 19 Si 0.769 3.231 20 H -0.205 1.205 21 H -0.237 1.237 22 H -0.184 1.184 23 C 0.020 3.980 24 C -0.157 4.157 25 H 0.134 0.866 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.257 0.743 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.216 10.253 15.696 26.141 hybrid contribution -0.424 -0.978 -1.144 1.564 sum -18.641 9.275 14.552 25.402 Atomic orbital electron populations 1.21944 0.87432 1.06455 1.06568 1.21639 0.92385 0.82081 0.73639 1.90726 1.71976 1.32754 1.51475 1.45962 1.04979 1.10551 1.75483 1.20380 0.82607 0.92489 0.99919 0.86412 1.22075 1.03185 1.03792 0.91774 1.23985 0.81390 0.89016 0.75208 1.90647 1.56969 1.47106 1.46644 1.86551 1.24731 1.41125 1.73498 1.22717 0.97624 0.82640 0.92063 1.22333 1.01463 0.99093 0.95156 1.21295 0.88667 0.93392 0.96514 1.44558 1.11847 1.75138 1.02970 1.18898 0.86468 1.37190 0.95346 0.92244 1.25882 0.99805 1.00147 0.96930 1.69958 1.33274 1.51083 1.05686 0.86010 0.81335 0.78006 0.77726 1.20499 1.23708 1.18430 1.21133 1.00842 0.94373 0.81606 1.22061 0.94008 0.98453 1.01168 0.86637 0.88651 0.87480 0.74298 0.89251 0.90518 0.90738 0.89989 0.91435 0.91382 0.92684 0.94661 0.92877 0.93991 0.90715 0.88067 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.32 71.24 0.74 -0.61 16 2 C 0.51 8.99 7.90 87.66 0.69 9.68 16 3 O -0.59 -15.56 16.75 -3.03 -0.05 -15.61 16 4 N -0.71 -11.78 4.95 -446.09 -2.21 -13.99 16 5 C 0.15 2.95 3.09 44.25 0.14 3.09 16 6 H 0.12 2.51 7.58 -2.39 -0.02 2.50 16 7 C -0.15 -2.28 9.42 71.98 0.68 -1.60 16 8 C 0.46 11.22 7.29 71.24 0.52 11.74 16 9 O -0.52 -14.79 15.06 21.96 0.33 -14.46 16 10 O -0.34 -9.13 9.78 -51.48 -0.50 -9.64 16 11 C 0.10 3.15 2.41 30.63 0.07 3.22 16 12 C -0.14 -5.00 5.73 30.68 0.18 -4.82 16 13 C 0.13 5.40 4.20 86.36 0.36 5.76 16 14 N -0.62 -28.53 2.77 -699.09 -1.94 -30.47 16 15 C -0.25 -13.92 10.03 84.03 0.84 -13.07 16 16 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 17 C -0.03 -1.89 5.23 84.86 0.44 -1.45 16 18 N -0.95 -59.72 13.97 21.65 0.30 -59.42 16 19 Si 0.94 46.40 24.34 68.60 1.67 48.07 16 20 H -0.28 -13.12 6.62 99.48 0.66 -12.46 16 21 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 22 H -0.26 -12.23 6.64 99.48 0.66 -11.57 16 23 C 0.15 5.18 6.52 86.37 0.56 5.75 16 24 C -0.12 -3.43 5.75 30.67 0.18 -3.26 16 25 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.09 0.82 8.12 -2.39 -0.02 0.80 16 27 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.42 5.71 7.79 -92.71 -0.72 4.99 16 29 H 0.09 1.28 8.11 -2.39 -0.02 1.26 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 2.52 7.16 -2.39 -0.02 2.50 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.61 4.50 -2.39 -0.01 2.59 16 36 H 0.04 1.47 7.07 -2.38 -0.02 1.45 16 37 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 40 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -72.42 333.77 3.22 -69.21 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.21 Total: 11.89 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 5.40 Total: 14.42 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -3.84 Total: -103.87 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.22 Total: -39.71 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.67 Total: 48.07 kcal Total: -72.42 3.22 -69.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357599063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.896 kcal (2) G-P(sol) polarization free energy of solvation -72.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds