Wall clock time and date at job start Tue Mar 31 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47165 * 2 1 4 4 C 1.50693 * 109.47164 * 120.00741 * 2 1 3 5 5 H 1.08000 * 120.00569 * 118.04702 * 4 2 1 6 6 C 1.37883 * 119.99892 * 298.04102 * 4 2 1 7 7 N 1.31517 * 119.99812 * 2.89962 * 6 4 2 8 8 Si 1.86795 * 120.00033 * 182.89134 * 6 4 2 9 9 H 1.48503 * 109.47152 * 84.99409 * 8 6 4 10 10 H 1.48497 * 109.47596 * 324.99705 * 8 6 4 11 11 H 1.48499 * 109.47345 * 204.99136 * 8 6 4 12 12 C 1.53009 * 109.46769 * 240.00310 * 2 1 3 13 13 N 1.46504 * 109.47047 * 60.00145 * 12 2 1 14 14 C 1.34771 * 119.99846 * 179.97438 * 13 12 2 15 15 O 1.21282 * 119.99959 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00022 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.87194 * 303.99863 * 16 14 13 18 18 C 1.54099 * 109.87361 * 64.99894 * 16 14 13 19 19 C 1.54819 * 104.18425 * 121.45463 * 18 16 14 20 20 C 1.54998 * 102.09268 * 20.88003 * 19 18 16 21 21 H 1.09001 * 110.61978 * 81.63436 * 20 19 18 22 22 C 1.50699 * 110.61934 * 204.47518 * 20 19 18 23 23 N 1.34776 * 120.00195 * 295.00142 * 22 20 19 24 24 O 1.21278 * 120.00238 * 114.99809 * 22 20 19 25 25 O 1.43743 * 109.87930 * 182.83214 * 16 14 13 26 26 H 1.09003 * 109.47174 * 299.99819 * 1 2 3 27 27 H 1.08999 * 109.47466 * 59.99508 * 1 2 3 28 28 H 1.08997 * 109.47625 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46489 * 174.05881 * 3 2 1 30 30 H 1.08992 * 109.47480 * 294.05831 * 3 2 1 31 31 H 1.08993 * 109.46657 * 54.06367 * 3 2 1 32 32 H 0.96997 * 119.99974 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46688 * 179.97438 * 12 2 1 34 34 H 1.08997 * 109.46815 * 300.00211 * 12 2 1 35 35 H 0.96994 * 119.99711 * 359.97438 * 13 12 2 36 36 H 1.08995 * 110.49312 * 240.12307 * 18 16 14 37 37 H 1.08999 * 110.48990 * 2.78407 * 18 16 14 38 38 H 1.08995 * 110.90734 * 139.07568 * 19 18 16 39 39 H 1.08998 * 110.90996 * 262.64899 * 19 18 16 40 40 H 0.97006 * 119.99395 * 359.97438 * 23 22 20 41 41 H 0.96995 * 120.00565 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6269 -1.6067 1.1315 6 6 1.7328 -0.2165 2.4823 7 7 0.9616 0.8418 2.6044 8 14 2.4223 -1.0504 4.0049 9 1 3.7850 -0.5286 4.2810 10 1 2.4903 -2.5165 3.7785 11 1 1.5401 -0.7692 5.1658 12 6 2.0399 -0.7212 -1.2494 13 7 1.5515 -0.0305 -2.4455 14 6 1.8775 -0.4906 -3.6696 15 8 2.5747 -1.4767 -3.7809 16 6 1.3747 0.2196 -4.9000 17 1 0.2870 0.2849 -4.8716 18 6 1.9827 1.6336 -4.9740 19 6 2.7320 1.6540 -6.3286 20 6 2.0391 0.5021 -7.1003 21 1 1.1019 0.8437 -7.5397 22 6 2.9528 -0.0484 -8.1649 23 7 3.3217 0.7274 -9.2034 24 8 3.3561 -1.1895 -8.0871 25 8 1.7942 -0.4883 -6.0787 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1248 1.4442 0.1064 30 1 1.7662 1.9247 -0.9383 31 1 1.5925 1.9860 0.8320 32 1 0.7507 1.1891 3.4851 33 1 3.1299 -0.7208 -1.2496 34 1 1.6765 -1.7488 -1.2494 35 1 0.9937 0.7579 -2.3564 36 1 1.1964 2.3882 -4.9618 37 1 2.6789 1.7931 -4.1506 38 1 2.5874 2.6062 -6.8388 39 1 3.7930 1.4465 -6.1894 40 1 2.9988 1.6400 -9.2657 41 1 3.9095 0.3730 -9.8888 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460810292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:13 Heat of formation + Delta-G solvation = -125.652416 kcal Electronic energy + Delta-G solvation = -22957.446355 eV Core-core repulsion = 19451.185875 eV Total energy + Delta-G solvation = -3506.260480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66134 -39.29459 -37.95458 -36.24069 -34.08543 -33.39058 -32.26136 -31.04929 -29.91628 -25.95891 -25.74908 -25.25570 -23.97929 -22.30228 -20.81114 -20.11484 -18.82700 -18.10972 -17.58693 -16.69827 -16.56948 -15.81839 -15.71534 -14.92392 -14.79775 -14.63470 -14.30593 -14.24565 -13.74827 -13.33484 -12.93429 -12.77940 -12.35684 -12.20066 -11.98941 -11.80828 -11.41573 -11.23673 -11.18295 -10.86188 -10.69848 -10.44779 -10.38906 -10.21394 -10.00476 -9.93731 -9.64127 -9.45289 -9.11677 -8.78744 -8.46512 -8.31388 -6.03263 -4.12308 2.34519 2.72693 3.00611 3.29029 3.35379 3.39006 3.48367 3.95057 4.17897 4.39820 4.46140 4.54164 4.71621 4.85610 4.92071 5.22213 5.24172 5.30369 5.37850 5.59027 5.74251 6.19794 6.32872 6.37052 6.49025 6.55067 6.78119 6.79103 6.91778 6.99195 7.00567 7.02181 7.34080 7.54258 7.69255 7.98508 7.99062 8.02875 8.13992 8.37525 8.70437 8.88409 9.53424 10.98731 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041159 B = 0.003252 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.123436 B = 8607.407152 C = 8859.391414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.287 1.287 12 C 0.133 3.867 13 N -0.715 5.715 14 C 0.502 3.498 15 O -0.525 6.525 16 C 0.056 3.944 17 H 0.098 0.902 18 C -0.146 4.146 19 C -0.141 4.141 20 C 0.054 3.946 21 H 0.100 0.900 22 C 0.521 3.479 23 N -0.854 5.854 24 O -0.512 6.512 25 O -0.316 6.316 26 H 0.085 0.915 27 H 0.006 0.994 28 H 0.027 0.973 29 H 0.029 0.971 30 H 0.006 0.994 31 H 0.082 0.918 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.397 0.603 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.401 0.599 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 9.251 -19.399 21.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 C -0.186 4.186 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.213 1.213 12 C 0.011 3.989 13 N -0.368 5.368 14 C 0.285 3.715 15 O -0.401 6.401 16 C -0.005 4.005 17 H 0.115 0.885 18 C -0.184 4.184 19 C -0.179 4.179 20 C -0.008 4.008 21 H 0.118 0.882 22 C 0.304 3.696 23 N -0.421 5.421 24 O -0.385 6.385 25 O -0.233 6.233 26 H 0.104 0.896 27 H 0.025 0.975 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.025 0.975 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.232 0.768 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.229 0.771 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -0.382 7.599 -19.090 20.551 hybrid contribution 0.083 0.531 0.607 0.811 sum -0.299 8.130 -18.484 20.195 Atomic orbital electron populations 1.21842 0.97760 0.99241 0.99990 1.18354 0.92786 0.92747 0.90532 1.21813 0.99383 0.98483 0.98945 1.20985 1.32941 1.10743 0.89914 0.92411 1.24872 0.94748 0.94988 0.98825 1.69815 1.36189 1.23233 1.23266 0.86586 0.78896 0.80004 0.82390 1.20639 1.19934 1.21315 1.21734 0.98210 0.95869 0.83135 1.46226 1.52969 1.31991 1.05601 1.20246 0.81587 0.85212 0.84419 1.90730 1.37180 1.25694 1.86495 1.22758 0.99811 0.91509 0.86459 0.88483 1.22960 1.01126 0.95608 0.98706 1.23116 1.01402 0.97972 0.95440 1.23027 0.97946 0.89421 0.90395 0.88236 1.20196 0.81146 0.85938 0.82285 1.43720 1.54182 1.17286 1.26890 1.90829 1.53903 1.17964 1.75793 1.89168 1.88003 1.27210 1.18871 0.89634 0.97533 0.95384 0.95214 0.97546 0.89885 0.93018 0.92654 0.92624 0.76777 0.88974 0.89046 0.88957 0.89623 0.77125 0.76375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.10 37.16 0.30 -2.59 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.81 8.04 37.16 0.30 -2.51 16 4 C -0.51 -13.28 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 6 C 0.07 1.76 5.14 -17.82 -0.09 1.66 16 7 N -0.89 -23.41 9.43 55.43 0.52 -22.89 16 8 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.13 2.84 4.50 -4.04 -0.02 2.82 16 13 N -0.71 -12.54 4.88 -60.29 -0.29 -12.84 16 14 C 0.50 9.11 6.95 -10.99 -0.08 9.03 16 15 O -0.53 -12.25 16.53 -14.02 -0.23 -12.48 16 16 C 0.06 0.75 3.84 -27.31 -0.10 0.64 16 17 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 18 C -0.15 -1.36 6.61 -25.20 -0.17 -1.53 16 19 C -0.14 -1.12 6.57 -24.72 -0.16 -1.28 16 20 C 0.05 0.55 3.76 -26.83 -0.10 0.45 16 21 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 22 C 0.52 5.99 7.48 -10.99 -0.08 5.91 16 23 N -0.85 -4.99 8.86 31.22 0.28 -4.71 16 24 O -0.51 -9.02 17.40 -13.51 -0.24 -9.25 16 25 O -0.32 -4.98 10.01 -64.30 -0.64 -5.62 16 26 H 0.08 2.09 6.12 -51.93 -0.32 1.78 16 27 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.01 0.10 6.71 -51.93 -0.35 -0.24 16 31 H 0.08 2.00 6.22 -51.93 -0.32 1.68 16 32 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.40 6.00 6.16 -40.82 -0.25 5.75 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.97 7.69 -51.93 -0.40 0.57 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.81 8.05 -51.93 -0.42 0.40 16 40 H 0.40 0.85 8.83 -40.82 -0.36 0.49 16 41 H 0.40 2.03 8.93 -40.82 -0.36 1.67 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -35.62 334.24 -7.21 -42.83 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.06 Total: 3.95 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -0.56 Total: 0.25 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.51 Total: -40.44 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -1.11 Total: -27.36 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.62 -7.21 -42.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460810292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.827 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds