Wall clock time and date at job start Tue Mar 31 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47165 * 2 1 4 4 C 1.50693 * 109.47164 * 120.00741 * 2 1 3 5 5 H 1.08000 * 120.00569 * 118.04702 * 4 2 1 6 6 C 1.37883 * 119.99892 * 298.04102 * 4 2 1 7 7 N 1.31517 * 119.99812 * 2.89962 * 6 4 2 8 8 Si 1.86795 * 120.00033 * 182.89134 * 6 4 2 9 9 H 1.48503 * 109.47152 * 84.99409 * 8 6 4 10 10 H 1.48497 * 109.47596 * 324.99705 * 8 6 4 11 11 H 1.48499 * 109.47345 * 204.99136 * 8 6 4 12 12 C 1.53009 * 109.46769 * 240.00310 * 2 1 3 13 13 N 1.46504 * 109.47047 * 60.00145 * 12 2 1 14 14 C 1.34771 * 119.99846 * 179.97438 * 13 12 2 15 15 O 1.21282 * 119.99959 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00022 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.87194 * 303.99863 * 16 14 13 18 18 C 1.54099 * 109.87361 * 64.99894 * 16 14 13 19 19 C 1.54819 * 104.18425 * 121.45463 * 18 16 14 20 20 C 1.54998 * 102.09268 * 20.88003 * 19 18 16 21 21 H 1.09001 * 110.61978 * 81.63436 * 20 19 18 22 22 C 1.50699 * 110.61934 * 204.47518 * 20 19 18 23 23 N 1.34776 * 120.00195 * 295.00142 * 22 20 19 24 24 O 1.21278 * 120.00238 * 114.99809 * 22 20 19 25 25 O 1.43743 * 109.87930 * 182.83214 * 16 14 13 26 26 H 1.09003 * 109.47174 * 299.99819 * 1 2 3 27 27 H 1.08999 * 109.47466 * 59.99508 * 1 2 3 28 28 H 1.08997 * 109.47625 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46489 * 174.05881 * 3 2 1 30 30 H 1.08992 * 109.47480 * 294.05831 * 3 2 1 31 31 H 1.08993 * 109.46657 * 54.06367 * 3 2 1 32 32 H 0.96997 * 119.99974 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46688 * 179.97438 * 12 2 1 34 34 H 1.08997 * 109.46815 * 300.00211 * 12 2 1 35 35 H 0.96994 * 119.99711 * 359.97438 * 13 12 2 36 36 H 1.08995 * 110.49312 * 240.12307 * 18 16 14 37 37 H 1.08999 * 110.48990 * 2.78407 * 18 16 14 38 38 H 1.08995 * 110.90734 * 139.07568 * 19 18 16 39 39 H 1.08998 * 110.90996 * 262.64899 * 19 18 16 40 40 H 0.97006 * 119.99395 * 359.97438 * 23 22 20 41 41 H 0.96995 * 120.00565 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6269 -1.6067 1.1315 6 6 1.7328 -0.2165 2.4823 7 7 0.9616 0.8418 2.6044 8 14 2.4223 -1.0504 4.0049 9 1 3.7850 -0.5286 4.2810 10 1 2.4903 -2.5165 3.7785 11 1 1.5401 -0.7692 5.1658 12 6 2.0399 -0.7212 -1.2494 13 7 1.5515 -0.0305 -2.4455 14 6 1.8775 -0.4906 -3.6696 15 8 2.5747 -1.4767 -3.7809 16 6 1.3747 0.2196 -4.9000 17 1 0.2870 0.2849 -4.8716 18 6 1.9827 1.6336 -4.9740 19 6 2.7320 1.6540 -6.3286 20 6 2.0391 0.5021 -7.1003 21 1 1.1019 0.8437 -7.5397 22 6 2.9528 -0.0484 -8.1649 23 7 3.3217 0.7274 -9.2034 24 8 3.3561 -1.1895 -8.0871 25 8 1.7942 -0.4883 -6.0787 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1248 1.4442 0.1064 30 1 1.7662 1.9247 -0.9383 31 1 1.5925 1.9860 0.8320 32 1 0.7507 1.1891 3.4851 33 1 3.1299 -0.7208 -1.2496 34 1 1.6765 -1.7488 -1.2494 35 1 0.9937 0.7579 -2.3564 36 1 1.1964 2.3882 -4.9618 37 1 2.6789 1.7931 -4.1506 38 1 2.5874 2.6062 -6.8388 39 1 3.7930 1.4465 -6.1894 40 1 2.9988 1.6400 -9.2657 41 1 3.9095 0.3730 -9.8888 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460810292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:13 Heat of formation + Delta-G solvation = -153.979430 kcal Electronic energy + Delta-G solvation = -22958.674707 eV Core-core repulsion = 19451.185875 eV Total energy + Delta-G solvation = -3507.488832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.65903 -40.51808 -39.11319 -37.97603 -35.09390 -34.86183 -33.29321 -32.62560 -30.95176 -27.54875 -27.53772 -27.01239 -25.21071 -23.13443 -21.58762 -21.47779 -20.61811 -19.08166 -18.42966 -17.90757 -17.57481 -17.46346 -16.96176 -16.52442 -16.21262 -15.66799 -15.59505 -15.41250 -14.81415 -14.66093 -14.52287 -14.42894 -13.98753 -13.26271 -13.22086 -13.07990 -12.77164 -12.70996 -12.61505 -12.56439 -12.22557 -12.15085 -11.94809 -11.47561 -11.42459 -11.25958 -10.89856 -10.72619 -10.70672 -10.46821 -10.40119 -9.98230 -8.03440 -6.17899 1.41919 1.44614 1.51357 1.52366 1.60791 1.85707 2.38147 2.49243 3.08564 3.20555 3.42607 3.76281 3.79691 3.90040 4.06858 4.15674 4.38675 4.44468 4.49835 4.63057 4.72553 4.84594 4.96138 4.99434 5.06805 5.07552 5.11822 5.20329 5.35331 5.56339 5.63544 5.68102 5.69448 5.88936 6.16755 6.21782 6.43568 6.45102 6.65852 6.85559 7.30677 7.32731 7.49434 8.95842 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041159 B = 0.003252 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.123436 B = 8607.407152 C = 8859.391414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.053 3.947 3 C -0.118 4.118 4 C -0.534 4.534 5 H 0.040 0.960 6 C 0.032 3.968 7 N -0.896 5.896 8 Si 0.942 3.058 9 H -0.278 1.278 10 H -0.279 1.279 11 H -0.281 1.281 12 C 0.148 3.852 13 N -0.701 5.701 14 C 0.495 3.505 15 O -0.588 6.588 16 C 0.060 3.940 17 H 0.133 0.867 18 C -0.141 4.141 19 C -0.133 4.133 20 C 0.047 3.953 21 H 0.146 0.854 22 C 0.514 3.486 23 N -0.823 5.823 24 O -0.590 6.590 25 O -0.368 6.368 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.261 0.739 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.413 0.587 36 H 0.141 0.859 37 H 0.074 0.926 38 H 0.147 0.853 39 H 0.060 0.940 40 H 0.423 0.577 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 12.377 -21.053 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.053 3.947 3 C -0.175 4.175 4 C -0.572 4.572 5 H 0.058 0.942 6 C -0.168 4.168 7 N -0.535 5.535 8 Si 0.769 3.231 9 H -0.204 1.204 10 H -0.205 1.205 11 H -0.206 1.206 12 C 0.024 3.976 13 N -0.355 5.355 14 C 0.282 3.718 15 O -0.468 6.468 16 C -0.001 4.001 17 H 0.151 0.849 18 C -0.179 4.179 19 C -0.170 4.170 20 C -0.013 4.013 21 H 0.164 0.836 22 C 0.299 3.701 23 N -0.390 5.390 24 O -0.469 6.469 25 O -0.286 6.286 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.251 0.749 36 H 0.159 0.841 37 H 0.093 0.907 38 H 0.165 0.835 39 H 0.079 0.921 40 H 0.256 0.744 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.738 10.839 -20.784 23.505 hybrid contribution 0.513 -0.420 1.049 1.242 sum -1.225 10.419 -19.734 22.350 Atomic orbital electron populations 1.21687 0.96882 0.98640 1.00676 1.18346 0.93395 0.93215 0.89787 1.21646 0.98222 0.97554 1.00120 1.21276 1.33334 1.10767 0.91860 0.94198 1.25396 0.95081 0.95616 1.00736 1.69900 1.36315 1.23575 1.23680 0.85821 0.78443 0.78835 0.79981 1.20419 1.20466 1.20599 1.21271 0.96882 0.95035 0.84449 1.45971 1.52821 1.32064 1.04594 1.21363 0.80157 0.84439 0.85836 1.90701 1.40028 1.28658 1.87420 1.22921 1.01564 0.92424 0.83200 0.84936 1.23076 1.02182 0.93866 0.98744 1.23182 0.99521 0.99428 0.94908 1.23460 0.99813 0.88786 0.89230 0.83641 1.20701 0.80793 0.85274 0.83350 1.43480 1.52621 1.17753 1.25097 1.90800 1.57031 1.21337 1.77756 1.89129 1.88493 1.30411 1.20580 0.91765 0.93875 0.96605 0.96555 0.93700 0.91881 0.92944 0.94699 0.94917 0.74869 0.84133 0.90680 0.83520 0.92094 0.74417 0.75699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.10 71.98 0.58 -4.67 16 2 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 3 C -0.12 -5.03 8.04 71.98 0.58 -4.45 16 4 C -0.53 -28.57 8.01 25.60 0.21 -28.36 16 5 H 0.04 2.21 7.75 -2.91 -0.02 2.19 16 6 C 0.03 1.68 5.14 84.66 0.44 2.12 16 7 N -0.90 -47.21 9.43 21.45 0.20 -47.01 16 8 Si 0.94 42.90 29.54 68.60 2.03 44.92 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.15 6.44 4.50 86.38 0.39 6.83 16 13 N -0.70 -23.89 4.88 -463.04 -2.26 -26.15 16 14 C 0.50 17.87 6.95 87.66 0.61 18.48 16 15 O -0.59 -28.66 16.53 15.68 0.26 -28.40 16 16 C 0.06 1.44 3.84 30.22 0.12 1.55 16 17 H 0.13 2.23 8.14 -2.39 -0.02 2.22 16 18 C -0.14 -2.01 6.61 31.59 0.21 -1.80 16 19 C -0.13 -1.56 6.57 31.90 0.21 -1.35 16 20 C 0.05 0.82 3.76 30.53 0.11 0.94 16 21 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 22 C 0.51 11.22 7.48 87.66 0.66 11.88 16 23 N -0.82 -7.44 8.86 -173.54 -1.54 -8.98 16 24 O -0.59 -21.58 17.40 15.21 0.26 -21.32 16 25 O -0.37 -11.27 10.01 -121.18 -1.21 -12.49 16 26 H 0.06 3.09 6.12 -2.39 -0.01 3.08 16 27 H 0.04 1.51 6.86 -2.39 -0.02 1.49 16 28 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.04 1.52 6.71 -2.39 -0.02 1.50 16 31 H 0.06 2.97 6.22 -2.39 -0.01 2.96 16 32 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 33 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.41 11.23 6.16 -92.71 -0.57 10.66 16 36 H 0.14 0.71 8.14 -2.39 -0.02 0.70 16 37 H 0.07 1.36 7.69 -2.39 -0.02 1.34 16 38 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.06 1.04 8.05 -2.39 -0.02 1.02 16 40 H 0.42 -0.05 8.83 -92.70 -0.82 -0.86 16 41 H 0.41 3.32 8.93 -92.71 -0.83 2.49 16 Total: -1.00 -85.18 334.24 0.68 -84.50 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -1.14 Total: 11.34 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 4.08 Total: 3.58 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -3.59 Total: -82.14 kcal Atomic # 8 Polarization: -61.52 SS G_CDS: -0.69 Total: -62.21 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -85.18 0.68 -84.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460810292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.478 kcal (2) G-P(sol) polarization free energy of solvation -85.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds