Wall clock time and date at job start Tue Mar 31 2020 05:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00221 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00561 * 2 1 3 13 13 N 1.46499 * 109.47198 * 59.99818 * 12 2 1 14 14 C 1.34777 * 120.00065 * 180.02562 * 13 12 2 15 15 O 1.21593 * 119.99923 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00128 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99858 * 179.97438 * 16 14 13 18 18 C 1.52997 * 110.32683 * 302.24329 * 17 16 14 19 19 C 1.54490 * 110.36721 * 180.02562 * 17 16 14 20 20 C 1.54563 * 102.14795 * 256.51101 * 19 17 16 21 21 O 1.45830 * 104.44567 * 333.15431 * 20 19 17 22 22 C 1.34064 * 109.90602 * 30.59883 * 21 20 19 23 23 O 1.20831 * 125.09278 * 159.18903 * 22 21 20 24 24 H 1.09004 * 109.46783 * 299.99970 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99629 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47069 * 300.00573 * 3 2 1 29 29 H 1.09004 * 109.46658 * 59.99952 * 3 2 1 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47211 * 180.02562 * 12 2 1 32 32 H 1.09007 * 109.46376 * 299.99965 * 12 2 1 33 33 H 0.97000 * 119.99795 * 0.02562 * 13 12 2 34 34 H 0.97001 * 119.99727 * 0.02562 * 16 14 13 35 35 H 1.08999 * 109.47336 * 59.30518 * 18 17 16 36 36 H 1.09008 * 109.46709 * 179.30127 * 18 17 16 37 37 H 1.08997 * 109.47722 * 299.29652 * 18 17 16 38 38 H 1.09011 * 110.86699 * 14.67885 * 19 17 16 39 39 H 1.09001 * 110.86595 * 138.13922 * 19 17 16 40 40 H 1.08998 * 110.44115 * 91.89154 * 20 19 17 41 41 H 1.09000 * 110.44448 * 214.28484 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0078 9 1 3.7959 -1.1286 4.0136 10 1 1.8119 -0.4308 5.2203 11 1 1.8152 -2.5278 4.0020 12 6 2.0400 -0.7211 -1.2493 13 7 1.5517 -0.0305 -2.4454 14 6 1.8769 -0.4911 -3.6696 15 8 2.5759 -1.4797 -3.7812 16 7 1.4272 0.1440 -4.7700 17 6 1.7811 -0.3565 -6.1006 18 6 3.3017 -0.4044 -6.2633 19 6 1.1516 0.5339 -7.1950 20 6 -0.0365 -0.3308 -7.6742 21 8 0.3757 -1.7017 -7.3959 22 6 1.1811 -1.7275 -6.3244 23 8 1.3959 -2.7000 -5.6402 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7006 1.1553 3.4844 31 1 3.1300 -0.7215 -1.2491 32 1 1.6766 -1.7488 -1.2493 33 1 0.9943 0.7584 -2.3564 34 1 0.8698 0.9328 -4.6809 35 1 3.7282 -1.0572 -5.5017 36 1 3.5493 -0.7900 -7.2524 37 1 3.7110 0.5996 -6.1519 38 1 0.8010 1.4766 -6.7745 39 1 1.8586 0.7114 -8.0054 40 1 -0.9380 -0.0833 -7.1138 41 1 -0.2029 -0.1908 -8.7423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520981832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:24 Heat of formation + Delta-G solvation = -106.387228 kcal Electronic energy + Delta-G solvation = -23482.119868 eV Core-core repulsion = 19976.694789 eV Total energy + Delta-G solvation = -3505.425079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49107 -39.33516 -37.39959 -36.62340 -35.26431 -33.30194 -31.81475 -30.55774 -29.47244 -25.79672 -25.70902 -25.41301 -24.65796 -22.87261 -21.37507 -19.98178 -18.76437 -18.21153 -17.55233 -16.87690 -16.27871 -15.78741 -15.21286 -14.89537 -14.67032 -14.55007 -14.24589 -13.82929 -13.54992 -13.04727 -12.85799 -12.70715 -12.50734 -12.30735 -12.17444 -12.10036 -11.70819 -11.36551 -11.17095 -10.83063 -10.79951 -10.70512 -10.41369 -10.32543 -10.17526 -9.61347 -9.56939 -9.28199 -8.97971 -8.77747 -8.39578 -8.19774 -6.00035 -4.09726 1.95140 3.01179 3.08770 3.32514 3.36222 3.40864 3.49771 3.80608 3.90879 4.21251 4.39918 4.46140 4.66255 4.95300 5.03364 5.15634 5.26821 5.32618 5.45029 5.61755 6.18320 6.23931 6.37873 6.40070 6.52316 6.63675 6.81557 6.83595 6.91406 7.05451 7.12124 7.23438 7.40864 7.54760 7.57540 7.71848 8.03020 8.14192 8.39365 8.45933 8.89916 9.05571 9.55922 11.01397 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035414 B = 0.003654 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.449249 B = 7660.492923 C = 7821.545488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.731 5.731 14 C 0.692 3.308 15 O -0.566 6.566 16 N -0.740 5.740 17 C 0.143 3.857 18 C -0.156 4.156 19 C -0.160 4.160 20 C 0.054 3.946 21 O -0.352 6.352 22 C 0.465 3.535 23 O -0.403 6.403 24 H 0.085 0.915 25 H 0.004 0.996 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.005 0.995 29 H 0.084 0.916 30 H 0.260 0.740 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.392 0.608 34 H 0.397 0.603 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 5.746 -19.965 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.386 5.386 14 C 0.391 3.609 15 O -0.442 6.442 16 N -0.401 5.401 17 C 0.053 3.947 18 C -0.214 4.214 19 C -0.198 4.198 20 C -0.021 4.021 21 O -0.269 6.269 22 C 0.300 3.700 23 O -0.280 6.280 24 H 0.104 0.896 25 H 0.023 0.977 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.024 0.976 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.227 0.773 34 H 0.232 0.768 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.582 4.227 -19.643 20.155 hybrid contribution -0.287 0.523 0.928 1.103 sum -1.869 4.750 -18.715 19.399 Atomic orbital electron populations 1.21816 0.97807 0.99168 0.99907 1.18367 0.92779 0.92775 0.90574 1.21807 0.98555 0.98338 0.99902 1.20954 1.31385 1.12159 0.89868 0.92445 1.24868 0.94853 0.94934 0.98817 1.69791 1.36669 1.22844 1.23275 0.86630 0.79223 0.79851 0.82139 1.20274 1.21364 1.20264 1.21593 0.97877 0.95484 0.82205 1.45493 1.55683 1.32959 1.04442 1.16129 0.81075 0.83105 0.80565 1.90950 1.41597 1.26307 1.85357 1.45098 1.58268 1.33543 1.03218 1.21244 0.98004 0.91888 0.83599 1.22144 0.91405 1.04186 1.03708 1.23285 0.98510 0.99291 0.98711 1.24077 0.97239 0.77419 1.03329 1.87073 1.62754 1.31170 1.45892 1.23435 0.77587 0.91039 0.77973 1.90830 1.57126 1.38576 1.41434 0.89646 0.97654 0.95463 0.95460 0.97619 0.89712 0.93002 0.92900 0.92895 0.77350 0.76755 0.88490 0.91627 0.91095 0.87829 0.87636 0.89637 0.86950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.07 37.16 0.30 -2.64 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.51 -13.39 8.01 -34.44 -0.28 -13.67 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.68 9.35 55.43 0.52 -23.17 16 8 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 13 N -0.73 -13.18 4.96 -65.22 -0.32 -13.50 16 14 C 0.69 12.35 7.98 -86.92 -0.69 11.65 16 15 O -0.57 -12.44 12.26 -16.38 -0.20 -12.64 16 16 N -0.74 -9.26 5.15 -52.47 -0.27 -9.53 16 17 C 0.14 1.61 0.97 -131.88 -0.13 1.48 16 18 C -0.16 -1.81 8.34 37.16 0.31 -1.50 16 19 C -0.16 -0.91 6.50 -25.13 -0.16 -1.07 16 20 C 0.05 0.34 7.90 37.98 0.30 0.64 16 21 O -0.35 -4.25 11.05 -38.47 -0.43 -4.68 16 22 C 0.47 7.01 7.31 36.31 0.27 7.28 16 23 O -0.40 -8.20 15.79 -25.84 -0.41 -8.61 16 24 H 0.08 2.14 6.06 -51.93 -0.31 1.82 16 25 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 29 H 0.08 2.10 6.08 -51.93 -0.32 1.78 16 30 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.39 6.21 6.18 -40.82 -0.25 5.96 16 34 H 0.40 3.55 8.21 -40.82 -0.34 3.22 16 35 H 0.10 1.54 6.06 -51.93 -0.31 1.23 16 36 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.36 7.64 -51.92 -0.40 -0.04 16 39 H 0.11 0.41 7.81 -51.93 -0.41 0.01 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 325.71 15.07 4.91 4.91 Total: -1.00 -33.46 325.71 -7.17 -40.63 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.97 Total: 4.89 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 0.03 Total: 5.78 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.08 Total: -46.19 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -1.03 Total: -25.93 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.46 -7.17 -40.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520981832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.756 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds