Wall clock time and date at job start Tue Mar 31 2020 05:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00221 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00561 * 2 1 3 13 13 N 1.46499 * 109.47198 * 59.99818 * 12 2 1 14 14 C 1.34777 * 120.00065 * 180.02562 * 13 12 2 15 15 O 1.21593 * 119.99923 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00128 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99858 * 179.97438 * 16 14 13 18 18 C 1.52997 * 110.32683 * 302.24329 * 17 16 14 19 19 C 1.54490 * 110.36721 * 180.02562 * 17 16 14 20 20 C 1.54563 * 102.14795 * 256.51101 * 19 17 16 21 21 O 1.45830 * 104.44567 * 333.15431 * 20 19 17 22 22 C 1.34064 * 109.90602 * 30.59883 * 21 20 19 23 23 O 1.20831 * 125.09278 * 159.18903 * 22 21 20 24 24 H 1.09004 * 109.46783 * 299.99970 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99629 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47069 * 300.00573 * 3 2 1 29 29 H 1.09004 * 109.46658 * 59.99952 * 3 2 1 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47211 * 180.02562 * 12 2 1 32 32 H 1.09007 * 109.46376 * 299.99965 * 12 2 1 33 33 H 0.97000 * 119.99795 * 0.02562 * 13 12 2 34 34 H 0.97001 * 119.99727 * 0.02562 * 16 14 13 35 35 H 1.08999 * 109.47336 * 59.30518 * 18 17 16 36 36 H 1.09008 * 109.46709 * 179.30127 * 18 17 16 37 37 H 1.08997 * 109.47722 * 299.29652 * 18 17 16 38 38 H 1.09011 * 110.86699 * 14.67885 * 19 17 16 39 39 H 1.09001 * 110.86595 * 138.13922 * 19 17 16 40 40 H 1.08998 * 110.44115 * 91.89154 * 20 19 17 41 41 H 1.09000 * 110.44448 * 214.28484 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0078 9 1 3.7959 -1.1286 4.0136 10 1 1.8119 -0.4308 5.2203 11 1 1.8152 -2.5278 4.0020 12 6 2.0400 -0.7211 -1.2493 13 7 1.5517 -0.0305 -2.4454 14 6 1.8769 -0.4911 -3.6696 15 8 2.5759 -1.4797 -3.7812 16 7 1.4272 0.1440 -4.7700 17 6 1.7811 -0.3565 -6.1006 18 6 3.3017 -0.4044 -6.2633 19 6 1.1516 0.5339 -7.1950 20 6 -0.0365 -0.3308 -7.6742 21 8 0.3757 -1.7017 -7.3959 22 6 1.1811 -1.7275 -6.3244 23 8 1.3959 -2.7000 -5.6402 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7006 1.1553 3.4844 31 1 3.1300 -0.7215 -1.2491 32 1 1.6766 -1.7488 -1.2493 33 1 0.9943 0.7584 -2.3564 34 1 0.8698 0.9328 -4.6809 35 1 3.7282 -1.0572 -5.5017 36 1 3.5493 -0.7900 -7.2524 37 1 3.7110 0.5996 -6.1519 38 1 0.8010 1.4766 -6.7745 39 1 1.8586 0.7114 -8.0054 40 1 -0.9380 -0.0833 -7.1138 41 1 -0.2029 -0.1908 -8.7423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520981832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:23 Heat of formation + Delta-G solvation = -130.206845 kcal Electronic energy + Delta-G solvation = -23483.152764 eV Core-core repulsion = 19976.694789 eV Total energy + Delta-G solvation = -3506.457975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.46901 -40.69623 -38.56214 -38.28695 -36.45204 -35.00575 -33.20821 -31.98995 -30.29092 -27.55344 -27.46215 -26.83444 -26.16217 -23.57923 -22.67097 -21.09899 -20.55806 -19.56304 -18.55501 -17.92900 -17.74491 -17.23104 -16.68282 -16.42471 -16.15275 -15.61642 -15.27651 -15.12215 -14.80323 -14.70974 -14.46816 -14.00171 -13.61234 -13.41748 -13.32762 -13.14113 -13.08409 -12.72381 -12.66672 -12.61523 -12.60099 -12.24111 -12.12980 -11.51942 -11.48253 -11.47025 -11.21473 -10.94907 -10.70584 -10.39199 -10.21980 -9.73164 -8.02175 -6.17480 0.86221 1.43986 1.44873 1.51731 1.81817 2.12788 2.31215 2.46406 2.93646 3.19590 3.21305 3.39602 3.67882 3.97694 4.27703 4.42838 4.53419 4.58297 4.63955 4.68753 4.72121 4.84090 4.96877 5.00368 5.06677 5.10876 5.20817 5.23483 5.37861 5.40165 5.65774 5.67263 5.68314 5.74073 6.03589 6.16425 6.22665 6.44553 6.47077 6.85902 7.15757 7.49937 7.68390 8.96563 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035414 B = 0.003654 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.449249 B = 7660.492923 C = 7821.545488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.052 3.948 3 C -0.116 4.116 4 C -0.531 4.531 5 H 0.041 0.959 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.171 3.829 13 N -0.724 5.724 14 C 0.687 3.313 15 O -0.610 6.610 16 N -0.718 5.718 17 C 0.137 3.863 18 C -0.155 4.155 19 C -0.140 4.140 20 C 0.044 3.956 21 O -0.368 6.368 22 C 0.459 3.541 23 O -0.476 6.476 24 H 0.064 0.936 25 H 0.038 0.962 26 H 0.012 0.988 27 H 0.017 0.983 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.261 0.739 31 H 0.035 0.965 32 H 0.025 0.975 33 H 0.406 0.594 34 H 0.419 0.581 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.099 0.901 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 8.415 -22.195 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.051 3.949 3 C -0.174 4.174 4 C -0.570 4.570 5 H 0.059 0.941 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.205 1.205 12 C 0.046 3.954 13 N -0.380 5.380 14 C 0.387 3.613 15 O -0.488 6.488 16 N -0.380 5.380 17 C 0.048 3.952 18 C -0.213 4.213 19 C -0.178 4.178 20 C -0.029 4.029 21 O -0.285 6.285 22 C 0.297 3.703 23 O -0.358 6.358 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.036 0.964 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.243 0.757 34 H 0.258 0.742 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.577 6.983 -21.935 23.163 hybrid contribution -0.032 -0.299 1.493 1.523 sum -2.609 6.684 -20.442 21.664 Atomic orbital electron populations 1.21652 0.97132 0.98371 1.00456 1.18366 0.93237 0.93296 0.90006 1.21624 0.97872 0.97443 1.00458 1.21240 1.31787 1.12250 0.91728 0.94083 1.25409 0.95100 0.95613 1.00801 1.69884 1.36794 1.23224 1.23674 0.85847 0.78660 0.78771 0.79698 1.20245 1.20542 1.20548 1.21069 0.96624 0.94321 0.83396 1.45152 1.56000 1.33183 1.03695 1.16348 0.80744 0.82790 0.81419 1.90950 1.43456 1.28380 1.86064 1.44860 1.57392 1.33394 1.02355 1.21537 0.98077 0.91314 0.84298 1.22112 0.91528 1.04455 1.03168 1.23408 0.98206 0.99065 0.97073 1.24642 0.97800 0.74426 1.06051 1.87035 1.61911 1.35216 1.44340 1.24165 0.77059 0.91551 0.77479 1.90787 1.59535 1.41186 1.44274 0.91729 0.94294 0.96894 0.96366 0.94132 0.91913 0.92965 0.94668 0.95607 0.75747 0.74173 0.93494 0.89605 0.88709 0.84342 0.84780 0.88265 0.83214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.07 71.98 0.58 -4.75 16 2 C 0.05 2.43 0.50 -52.93 -0.03 2.41 16 3 C -0.12 -5.11 8.08 71.98 0.58 -4.52 16 4 C -0.53 -28.83 8.01 25.60 0.21 -28.62 16 5 H 0.04 2.30 7.74 -2.91 -0.02 2.27 16 6 C 0.03 1.64 5.15 84.65 0.44 2.07 16 7 N -0.90 -47.92 9.35 21.45 0.20 -47.72 16 8 Si 0.94 43.31 29.54 68.60 2.03 45.33 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 C 0.17 7.63 4.50 86.38 0.39 8.02 16 13 N -0.72 -25.57 4.96 -478.51 -2.37 -27.94 16 14 C 0.69 24.37 7.98 179.05 1.43 25.79 16 15 O -0.61 -27.93 12.26 16.71 0.20 -27.72 16 16 N -0.72 -16.30 5.15 -438.19 -2.26 -18.55 16 17 C 0.14 2.77 0.97 3.56 0.00 2.78 16 18 C -0.15 -3.34 8.34 71.98 0.60 -2.74 16 19 C -0.14 -0.84 6.50 31.63 0.21 -0.63 16 20 C 0.04 0.34 7.90 72.51 0.57 0.92 16 21 O -0.37 -8.28 11.05 -50.16 -0.55 -8.84 16 22 C 0.46 13.75 7.31 71.43 0.52 14.27 16 23 O -0.48 -20.44 15.79 28.72 0.45 -19.99 16 24 H 0.06 3.21 6.06 -2.38 -0.01 3.19 16 25 H 0.04 1.44 6.86 -2.38 -0.02 1.42 16 26 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 29 H 0.06 3.06 6.08 -2.38 -0.01 3.05 16 30 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 31 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.03 1.27 8.14 -2.38 -0.02 1.26 16 33 H 0.41 11.83 6.18 -92.71 -0.57 11.26 16 34 H 0.42 5.75 8.21 -92.71 -0.76 4.99 16 35 H 0.05 1.53 6.06 -2.39 -0.01 1.52 16 36 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.14 -0.03 7.64 -2.38 -0.02 -0.05 16 39 H 0.13 0.17 7.81 -2.39 -0.02 0.15 16 40 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -79.47 325.71 2.92 -76.54 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -0.27 Total: 13.90 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 5.50 Total: 14.99 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -4.43 Total: -94.22 kcal Atomic # 8 Polarization: -56.65 SS G_CDS: 0.10 Total: -56.55 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -79.47 2.92 -76.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520981832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.663 kcal (2) G-P(sol) polarization free energy of solvation -79.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds