Wall clock time and date at job start Tue Mar 31 2020 05:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47454 * 2 1 4 4 C 1.52999 * 109.47026 * 120.00302 * 2 1 3 5 5 H 1.09004 * 109.46732 * 299.99837 * 4 2 1 6 6 C 1.50690 * 109.47192 * 179.97438 * 4 2 1 7 7 O 1.20829 * 120.00006 * 239.99919 * 6 4 2 8 8 O 1.34233 * 120.00220 * 59.99647 * 6 4 2 9 9 C 1.50697 * 109.47370 * 59.99477 * 4 2 1 10 10 O 1.21291 * 120.00071 * 0.02562 * 9 4 2 11 11 N 1.34772 * 120.00458 * 180.02562 * 9 4 2 12 12 C 1.46964 * 120.59818 * 180.02562 * 11 9 4 13 13 C 1.53374 * 108.63126 * 124.74941 * 12 11 9 14 14 N 1.46964 * 108.63419 * 49.42879 * 13 12 11 15 15 C 1.36941 * 120.59580 * 124.74840 * 14 13 12 16 16 H 1.08008 * 119.99717 * 332.32528 * 15 14 13 17 17 C 1.38810 * 120.00416 * 152.31924 * 15 14 13 18 18 N 1.31616 * 119.99999 * 159.33211 * 17 15 14 19 19 Si 1.86801 * 119.99878 * 339.33799 * 17 15 14 20 20 H 1.48504 * 109.47162 * 93.68423 * 19 17 15 21 21 H 1.48493 * 109.47071 * 213.68495 * 19 17 15 22 22 H 1.48503 * 109.47223 * 333.68658 * 19 17 15 23 23 C 1.46967 * 118.81324 * 304.77029 * 14 13 12 24 24 C 1.46964 * 120.59097 * 359.97438 * 11 9 4 25 25 H 1.09000 * 109.46705 * 59.99465 * 1 2 3 26 26 H 1.09000 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46844 * 300.00542 * 1 2 3 28 28 H 1.09001 * 109.46497 * 239.99868 * 2 1 3 29 29 H 1.08990 * 109.47246 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47182 * 300.00530 * 3 2 1 31 31 H 1.09004 * 109.47037 * 59.99714 * 3 2 1 32 32 H 0.96699 * 117.00408 * 179.97438 * 8 6 4 33 33 H 1.09001 * 109.60787 * 5.01104 * 12 11 9 34 34 H 1.08991 * 109.61156 * 244.49453 * 12 11 9 35 35 H 1.09007 * 109.60393 * 169.16918 * 13 12 11 36 36 H 1.08993 * 109.61250 * 289.50848 * 13 12 11 37 37 H 0.97001 * 119.99940 * 180.02562 * 18 17 15 38 38 H 1.08994 * 109.61015 * 174.97296 * 23 14 13 39 39 H 1.08999 * 109.60285 * 295.48137 * 23 14 13 40 40 H 1.08999 * 109.61535 * 115.50108 * 24 11 9 41 41 H 1.09007 * 109.60978 * 354.98875 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5469 -0.7219 1.2489 7 8 4.1507 -1.7685 1.2489 8 8 4.2186 0.4403 1.2486 9 6 1.5376 -2.1421 1.2492 10 8 0.8406 -2.5389 0.3394 11 7 1.8627 -2.9719 2.2602 12 6 1.3804 -4.3600 2.2732 13 6 2.5880 -5.2972 2.3987 14 7 3.4316 -4.8301 3.5078 15 6 3.7620 -5.6732 4.5351 16 1 3.1032 -6.4876 4.7985 17 6 4.9435 -5.4812 5.2380 18 7 5.0836 -5.9936 6.4422 19 14 6.3346 -4.4954 4.4747 20 1 6.2308 -3.0778 4.9048 21 1 7.6376 -5.0530 4.9180 22 1 6.2413 -4.5717 2.9946 23 6 3.9139 -3.4419 3.4950 24 6 2.7068 -2.5050 3.3690 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 5.1842 0.3894 1.2488 33 1 0.8485 -4.5711 1.3455 34 1 0.7131 -4.5075 3.1222 35 1 2.2443 -6.3114 2.6025 36 1 3.1593 -5.2841 1.4706 37 1 5.9091 -5.8591 6.9334 38 1 4.4458 -3.2308 4.4226 39 1 4.5813 -3.2945 2.6459 40 1 2.1342 -2.5200 4.2963 41 1 3.0509 -1.4910 3.1650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588803267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:38 Heat of formation + Delta-G solvation = -85.170066 kcal Electronic energy + Delta-G solvation = -24575.049575 eV Core-core repulsion = 21070.544542 eV Total energy + Delta-G solvation = -3504.505034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.26864 -39.30950 -37.45729 -36.27789 -35.56624 -33.99386 -31.66175 -30.81836 -29.36505 -27.25704 -26.98363 -23.76835 -23.31308 -22.56340 -21.34703 -20.08067 -18.74177 -18.30615 -17.50222 -17.07970 -16.24914 -15.96152 -15.81746 -14.96110 -14.59322 -14.22068 -14.16467 -13.93642 -13.68815 -13.45424 -13.12866 -12.74118 -12.63437 -12.31888 -12.18907 -12.10520 -12.03100 -11.65342 -11.33388 -11.07981 -10.94195 -10.89809 -10.84170 -10.51728 -10.35678 -10.28511 -9.99992 -9.54001 -9.50130 -8.84714 -8.31054 -6.95327 -5.99008 -3.35142 2.03627 2.33816 3.13661 3.20227 3.27597 3.46529 3.54382 4.28519 4.45976 4.49894 4.73108 4.85928 5.04049 5.15151 5.16596 5.30264 5.43161 5.45748 5.55425 5.61679 5.75180 5.76803 5.87059 5.89607 6.03707 6.04328 6.08797 6.16729 6.20069 6.29523 6.38818 6.44625 6.65921 6.83770 6.88118 7.64975 7.77676 7.90732 8.27569 8.29236 8.88906 9.67496 10.05606 11.16718 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024471 B = 0.006094 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.938591 B = 4593.324148 C = 5405.770246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.069 4.069 3 C -0.159 4.159 4 C -0.099 4.099 5 H 0.129 0.871 6 C 0.479 3.521 7 O -0.483 6.483 8 O -0.508 6.508 9 C 0.529 3.471 10 O -0.538 6.538 11 N -0.582 5.582 12 C 0.096 3.904 13 C 0.136 3.864 14 N -0.605 5.605 15 C -0.261 4.261 16 H 0.088 0.912 17 C 0.025 3.975 18 N -0.907 5.907 19 Si 0.880 3.120 20 H -0.290 1.290 21 H -0.302 1.302 22 H -0.268 1.268 23 C 0.114 3.886 24 C 0.096 3.904 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.408 0.592 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 15.470 -10.523 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.088 4.088 3 C -0.216 4.216 4 C -0.121 4.121 5 H 0.147 0.853 6 C 0.320 3.680 7 O -0.368 6.368 8 O -0.321 6.321 9 C 0.315 3.685 10 O -0.417 6.417 11 N -0.313 5.313 12 C -0.028 4.028 13 C 0.009 3.991 14 N -0.329 5.329 15 C -0.389 4.389 16 H 0.105 0.895 17 C -0.174 4.174 18 N -0.549 5.549 19 Si 0.710 3.290 20 H -0.218 1.218 21 H -0.231 1.231 22 H -0.193 1.193 23 C -0.012 4.012 24 C -0.029 4.029 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.268 0.732 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.490 14.886 -10.826 19.517 hybrid contribution 1.683 0.620 -0.060 1.794 sum -4.807 15.506 -10.886 19.547 Atomic orbital electron populations 1.22068 0.93441 1.04564 1.01308 1.20855 0.97453 0.95692 0.94829 1.22130 1.02924 0.94622 1.01893 1.21415 0.88951 0.97424 1.04318 0.85333 1.22833 0.90746 0.81545 0.72894 1.90891 1.70095 1.32535 1.43304 1.84595 1.26664 1.35242 1.85616 1.19588 0.80781 0.85919 0.82173 1.90606 1.39432 1.76077 1.35600 1.47894 1.49018 1.12232 1.22116 1.22273 0.98006 0.80241 1.02271 1.21295 0.90641 0.96182 0.90952 1.44281 1.59127 1.06646 1.22800 1.18946 1.02753 1.10899 1.06297 0.89487 1.25278 0.97425 0.98366 0.96356 1.69832 1.26921 1.48082 1.10115 0.86985 0.82721 0.78620 0.80633 1.21821 1.23068 1.19276 1.21781 0.93826 0.84632 1.00961 1.22379 0.94146 0.97556 0.88830 0.92490 0.89467 0.93137 0.90142 0.90349 0.92365 0.92443 0.73210 0.89480 0.91290 0.90641 0.95268 0.92731 0.90565 0.92877 0.90966 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.87 37.16 0.33 -1.34 16 2 C -0.07 -0.76 2.14 -90.62 -0.19 -0.96 16 3 C -0.16 -1.38 8.68 37.16 0.32 -1.05 16 4 C -0.10 -1.25 1.48 -92.93 -0.14 -1.38 16 5 H 0.13 1.34 7.91 -51.93 -0.41 0.93 16 6 C 0.48 6.30 5.73 36.00 0.21 6.51 16 7 O -0.48 -8.34 12.76 -18.75 -0.24 -8.58 16 8 O -0.51 -4.72 10.34 -39.27 -0.41 -5.12 16 9 C 0.53 8.61 6.30 -10.99 -0.07 8.54 16 10 O -0.54 -9.66 13.06 5.55 0.07 -9.59 16 11 N -0.58 -10.22 2.74 -172.52 -0.47 -10.69 16 12 C 0.10 1.70 6.59 -3.60 -0.02 1.67 16 13 C 0.14 2.79 6.67 -3.60 -0.02 2.76 16 14 N -0.60 -14.54 2.74 -172.07 -0.47 -15.02 16 15 C -0.26 -7.25 10.03 -15.06 -0.15 -7.40 16 16 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 17 C 0.02 0.72 5.23 -17.43 -0.09 0.62 16 18 N -0.91 -27.56 13.97 55.49 0.78 -26.79 16 19 Si 0.88 22.56 24.38 -169.99 -4.14 18.41 16 20 H -0.29 -7.08 6.64 56.52 0.38 -6.71 16 21 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 22 H -0.27 -6.98 6.64 56.52 0.38 -6.61 16 23 C 0.11 2.53 4.12 -3.62 -0.01 2.52 16 24 C 0.10 1.70 5.48 -3.63 -0.02 1.68 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.09 1.15 5.51 -51.93 -0.29 0.87 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 29 H 0.08 0.69 5.32 -51.93 -0.28 0.41 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.41 2.38 9.10 45.56 0.41 2.79 16 33 H 0.09 1.48 6.99 -51.93 -0.36 1.11 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.47 7.93 -51.93 -0.41 1.06 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.08 1.82 4.41 -51.93 -0.23 1.59 16 39 H 0.05 1.25 5.07 -51.93 -0.26 0.99 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.06 0.91 4.51 -51.93 -0.23 0.67 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -33.79 309.90 -5.13 -38.92 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.05 Total: 1.61 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 0.13 Total: 12.18 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.17 Total: -52.49 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.57 Total: -23.30 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.14 Total: 18.41 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.79 -5.13 -38.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588803267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.253 kcal (2) G-P(sol) polarization free energy of solvation -33.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds