Wall clock time and date at job start Tue Mar 31 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47454 * 2 1 4 4 C 1.52999 * 109.47026 * 120.00302 * 2 1 3 5 5 H 1.09004 * 109.46732 * 299.99837 * 4 2 1 6 6 C 1.50690 * 109.47192 * 179.97438 * 4 2 1 7 7 O 1.20829 * 120.00006 * 239.99919 * 6 4 2 8 8 O 1.34233 * 120.00220 * 59.99647 * 6 4 2 9 9 C 1.50697 * 109.47370 * 59.99477 * 4 2 1 10 10 O 1.21291 * 120.00071 * 0.02562 * 9 4 2 11 11 N 1.34772 * 120.00458 * 180.02562 * 9 4 2 12 12 C 1.46964 * 120.59818 * 180.02562 * 11 9 4 13 13 C 1.53374 * 108.63126 * 124.74941 * 12 11 9 14 14 N 1.46964 * 108.63419 * 49.42879 * 13 12 11 15 15 C 1.36941 * 120.59580 * 124.74840 * 14 13 12 16 16 H 1.08008 * 119.99717 * 332.32528 * 15 14 13 17 17 C 1.38810 * 120.00416 * 152.31924 * 15 14 13 18 18 N 1.31616 * 119.99999 * 159.33211 * 17 15 14 19 19 Si 1.86801 * 119.99878 * 339.33799 * 17 15 14 20 20 H 1.48504 * 109.47162 * 93.68423 * 19 17 15 21 21 H 1.48493 * 109.47071 * 213.68495 * 19 17 15 22 22 H 1.48503 * 109.47223 * 333.68658 * 19 17 15 23 23 C 1.46967 * 118.81324 * 304.77029 * 14 13 12 24 24 C 1.46964 * 120.59097 * 359.97438 * 11 9 4 25 25 H 1.09000 * 109.46705 * 59.99465 * 1 2 3 26 26 H 1.09000 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46844 * 300.00542 * 1 2 3 28 28 H 1.09001 * 109.46497 * 239.99868 * 2 1 3 29 29 H 1.08990 * 109.47246 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47182 * 300.00530 * 3 2 1 31 31 H 1.09004 * 109.47037 * 59.99714 * 3 2 1 32 32 H 0.96699 * 117.00408 * 179.97438 * 8 6 4 33 33 H 1.09001 * 109.60787 * 5.01104 * 12 11 9 34 34 H 1.08991 * 109.61156 * 244.49453 * 12 11 9 35 35 H 1.09007 * 109.60393 * 169.16918 * 13 12 11 36 36 H 1.08993 * 109.61250 * 289.50848 * 13 12 11 37 37 H 0.97001 * 119.99940 * 180.02562 * 18 17 15 38 38 H 1.08994 * 109.61015 * 174.97296 * 23 14 13 39 39 H 1.08999 * 109.60285 * 295.48137 * 23 14 13 40 40 H 1.08999 * 109.61535 * 115.50108 * 24 11 9 41 41 H 1.09007 * 109.60978 * 354.98875 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5469 -0.7219 1.2489 7 8 4.1507 -1.7685 1.2489 8 8 4.2186 0.4403 1.2486 9 6 1.5376 -2.1421 1.2492 10 8 0.8406 -2.5389 0.3394 11 7 1.8627 -2.9719 2.2602 12 6 1.3804 -4.3600 2.2732 13 6 2.5880 -5.2972 2.3987 14 7 3.4316 -4.8301 3.5078 15 6 3.7620 -5.6732 4.5351 16 1 3.1032 -6.4876 4.7985 17 6 4.9435 -5.4812 5.2380 18 7 5.0836 -5.9936 6.4422 19 14 6.3346 -4.4954 4.4747 20 1 6.2308 -3.0778 4.9048 21 1 7.6376 -5.0530 4.9180 22 1 6.2413 -4.5717 2.9946 23 6 3.9139 -3.4419 3.4950 24 6 2.7068 -2.5050 3.3690 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 5.1842 0.3894 1.2488 33 1 0.8485 -4.5711 1.3455 34 1 0.7131 -4.5075 3.1222 35 1 2.2443 -6.3114 2.6025 36 1 3.1593 -5.2841 1.4706 37 1 5.9091 -5.8591 6.9334 38 1 4.4458 -3.2308 4.4226 39 1 4.5813 -3.2945 2.6459 40 1 2.1342 -2.5200 4.2963 41 1 3.0509 -1.4910 3.1650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588803267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:37 Heat of formation + Delta-G solvation = -109.792271 kcal Electronic energy + Delta-G solvation = -24576.117274 eV Core-core repulsion = 21070.544542 eV Total energy + Delta-G solvation = -3505.572733 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.38740 -40.49964 -38.95996 -37.27753 -36.55798 -35.68461 -33.61092 -32.42888 -30.51530 -28.66911 -27.97869 -25.47462 -24.91856 -23.74594 -22.60951 -21.32226 -20.13090 -19.30382 -18.98753 -18.13992 -17.88623 -17.34962 -17.10226 -16.64301 -16.09629 -15.78336 -15.44991 -15.26651 -14.83189 -14.74492 -14.48817 -14.26802 -13.98489 -13.80379 -13.59679 -13.27898 -12.92872 -12.89298 -12.70778 -12.49975 -12.31470 -12.23647 -12.04515 -11.81099 -11.75694 -11.66888 -11.59366 -11.51897 -10.89995 -10.76707 -9.89905 -8.88808 -8.20492 -5.53022 1.02897 1.20619 1.22899 1.37866 1.48809 1.86242 2.17081 2.36738 3.00318 3.16122 3.24303 3.52728 3.84195 4.00443 4.06270 4.16201 4.24756 4.33385 4.36037 4.36286 4.50995 4.55621 4.61194 4.63442 4.76000 4.88877 4.92791 5.07125 5.11158 5.14559 5.27261 5.35936 5.48843 5.59410 5.62191 5.81032 6.08159 6.33829 6.83852 6.90485 6.99341 7.55216 7.97340 8.99045 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024471 B = 0.006094 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.938591 B = 4593.324148 C = 5405.770246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.066 4.066 3 C -0.152 4.152 4 C -0.098 4.098 5 H 0.159 0.841 6 C 0.488 3.512 7 O -0.529 6.529 8 O -0.489 6.489 9 C 0.527 3.473 10 O -0.557 6.557 11 N -0.591 5.591 12 C 0.105 3.895 13 C 0.134 3.866 14 N -0.618 5.618 15 C -0.250 4.250 16 H 0.060 0.940 17 C -0.026 4.026 18 N -0.950 5.950 19 Si 0.941 3.059 20 H -0.269 1.269 21 H -0.308 1.308 22 H -0.277 1.277 23 C 0.112 3.888 24 C 0.108 3.892 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.427 0.573 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.371 18.613 -11.448 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.085 4.085 3 C -0.209 4.209 4 C -0.120 4.120 5 H 0.176 0.824 6 C 0.330 3.670 7 O -0.419 6.419 8 O -0.303 6.303 9 C 0.315 3.685 10 O -0.437 6.437 11 N -0.322 5.322 12 C -0.019 4.019 13 C 0.009 3.991 14 N -0.342 5.342 15 C -0.379 4.379 16 H 0.078 0.922 17 C -0.221 4.221 18 N -0.596 5.596 19 Si 0.770 3.230 20 H -0.195 1.195 21 H -0.237 1.237 22 H -0.202 1.202 23 C -0.014 4.014 24 C -0.016 4.016 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.289 0.711 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.891 18.098 -11.789 22.672 hybrid contribution 1.737 -0.357 0.127 1.778 sum -5.154 17.742 -11.662 21.848 Atomic orbital electron populations 1.22011 0.93137 1.03094 1.02818 1.20864 0.97633 0.96841 0.93127 1.22085 1.02835 0.92808 1.03172 1.21491 0.88934 0.95069 1.06521 0.82361 1.22848 0.90894 0.81594 0.71642 1.90894 1.70979 1.34275 1.45755 1.84550 1.28268 1.32974 1.84527 1.20200 0.80055 0.87203 0.81090 1.90610 1.40149 1.76925 1.35985 1.47957 1.49344 1.12225 1.22667 1.22066 0.96523 0.80277 1.02983 1.21388 0.91100 0.97316 0.89325 1.44403 1.59584 1.07355 1.22908 1.18905 1.02031 1.10411 1.06550 0.92200 1.25800 0.99416 1.00289 0.96634 1.69937 1.27523 1.50678 1.11465 0.86003 0.79497 0.78570 0.78909 1.19510 1.23708 1.20231 1.21739 0.95613 0.84434 0.99580 1.22176 0.92326 0.97769 0.89378 0.91188 0.92308 0.91486 0.92084 0.90381 0.91246 0.91074 0.71055 0.88635 0.90604 0.90391 0.96164 0.92770 0.92220 0.93808 0.90373 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.87 71.98 0.64 -2.21 16 2 C -0.07 -1.25 2.14 -10.79 -0.02 -1.27 16 3 C -0.15 -2.02 8.68 71.98 0.62 -1.39 16 4 C -0.10 -2.17 1.48 -12.29 -0.02 -2.19 16 5 H 0.16 2.57 7.91 -2.39 -0.02 2.55 16 6 C 0.49 11.35 5.73 71.23 0.41 11.76 16 7 O -0.53 -17.30 12.76 21.95 0.28 -17.02 16 8 O -0.49 -7.15 10.34 -51.45 -0.53 -7.68 16 9 C 0.53 16.12 6.30 87.66 0.55 16.67 16 10 O -0.56 -19.35 13.06 -3.06 -0.04 -19.39 16 11 N -0.59 -19.75 2.74 -818.12 -2.24 -22.00 16 12 C 0.11 3.64 6.59 86.42 0.57 4.21 16 13 C 0.13 5.52 6.67 86.42 0.58 6.10 16 14 N -0.62 -29.74 2.74 -698.30 -1.91 -31.65 16 15 C -0.25 -14.12 10.03 84.03 0.84 -13.28 16 16 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 17 C -0.03 -1.51 5.23 84.86 0.44 -1.07 16 18 N -0.95 -58.94 13.97 21.65 0.30 -58.64 16 19 Si 0.94 47.18 24.38 68.60 1.67 48.86 16 20 H -0.27 -12.39 6.64 99.48 0.66 -11.73 16 21 H -0.31 -15.61 7.11 99.48 0.71 -14.91 16 22 H -0.28 -14.15 6.64 99.48 0.66 -13.49 16 23 C 0.11 4.84 4.12 86.40 0.36 5.20 16 24 C 0.11 3.61 5.48 86.40 0.47 4.09 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.46 5.51 -2.39 -0.01 1.44 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 29 H 0.08 1.05 5.32 -2.39 -0.01 1.04 16 30 H 0.07 0.79 8.14 -2.38 -0.02 0.78 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.43 3.33 9.10 -74.06 -0.67 2.66 16 33 H 0.10 3.15 6.99 -2.39 -0.02 3.14 16 34 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.08 3.09 7.93 -2.38 -0.02 3.07 16 36 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.06 2.77 4.41 -2.39 -0.01 2.76 16 39 H 0.04 2.02 5.07 -2.39 -0.01 2.01 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.52 16 41 H 0.09 2.43 4.51 -2.38 -0.01 2.42 16 Total: -1.00 -74.01 309.90 3.26 -70.74 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.29 Total: 10.15 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: 5.44 Total: 26.62 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -3.85 Total: -112.28 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.29 Total: -44.09 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.67 Total: 48.86 kcal Total: -74.01 3.26 -70.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588803267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.050 kcal (2) G-P(sol) polarization free energy of solvation -74.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds