Wall clock time and date at job start Tue Mar 31 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47322 * 2 1 4 4 C 1.52997 * 109.47352 * 120.00648 * 2 1 3 5 5 H 1.09009 * 109.47030 * 299.99443 * 4 2 1 6 6 C 1.50693 * 109.47326 * 59.99425 * 4 2 1 7 7 O 1.20831 * 120.00176 * 119.99911 * 6 4 2 8 8 O 1.34231 * 120.00284 * 300.00094 * 6 4 2 9 9 C 1.50696 * 109.47213 * 179.97438 * 4 2 1 10 10 O 1.21282 * 120.00165 * 359.97438 * 9 4 2 11 11 N 1.34777 * 120.00223 * 180.02562 * 9 4 2 12 12 C 1.46965 * 120.59591 * 179.97438 * 11 9 4 13 13 C 1.53368 * 108.63461 * 235.19896 * 12 11 9 14 14 N 1.46961 * 108.63758 * 310.57791 * 13 12 11 15 15 C 1.36940 * 120.59509 * 235.20411 * 14 13 12 16 16 H 1.07997 * 120.00120 * 28.28429 * 15 14 13 17 17 C 1.38816 * 119.99751 * 208.56808 * 15 14 13 18 18 N 1.31617 * 120.00015 * 17.29706 * 17 15 14 19 19 Si 1.86798 * 119.99365 * 197.30020 * 17 15 14 20 20 H 1.48501 * 109.47383 * 90.00060 * 19 17 15 21 21 H 1.48507 * 109.46798 * 209.99869 * 19 17 15 22 22 H 1.48496 * 109.47460 * 329.99621 * 19 17 15 23 23 C 1.46968 * 118.81094 * 55.47569 * 14 13 12 24 24 C 1.46970 * 120.59286 * 359.96887 * 11 9 4 25 25 H 1.09009 * 109.46598 * 299.99644 * 1 2 3 26 26 H 1.08994 * 109.47122 * 59.98983 * 1 2 3 27 27 H 1.08994 * 109.47165 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46695 * 240.00678 * 2 1 3 29 29 H 1.08997 * 109.47083 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47134 * 300.00672 * 3 2 1 31 31 H 1.09001 * 109.46682 * 60.00670 * 3 2 1 32 32 H 0.96697 * 117.00300 * 179.97438 * 8 6 4 33 33 H 1.09003 * 109.61044 * 115.45453 * 12 11 9 34 34 H 1.09000 * 109.60833 * 354.94638 * 12 11 9 35 35 H 1.08997 * 109.61062 * 190.82960 * 13 12 11 36 36 H 1.09006 * 109.60554 * 70.32000 * 13 12 11 37 37 H 0.97000 * 119.99467 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.61036 * 64.27036 * 23 14 13 39 39 H 1.09008 * 109.60681 * 184.77771 * 23 14 13 40 40 H 1.08993 * 109.61048 * 244.54057 * 24 11 9 41 41 H 1.08998 * 109.60475 * 5.05597 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5377 -2.1421 1.2491 7 8 2.3228 -3.0606 1.2490 8 8 0.2180 -2.3874 1.2492 9 6 3.5470 -0.7219 1.2488 10 8 4.1534 -0.1974 0.3388 11 7 4.2210 -1.3061 2.2592 12 6 5.6906 -1.3148 2.2717 13 6 6.1710 -2.7658 2.3973 14 7 5.4495 -3.4052 3.5065 15 6 6.1342 -3.9988 4.5331 16 1 7.1180 -3.6438 4.8025 17 6 5.5662 -5.0606 5.2238 18 7 4.5516 -5.7172 4.7026 19 14 6.2420 -5.5572 6.8929 20 1 5.5301 -4.8069 7.9585 21 1 6.0405 -7.0147 7.0947 22 1 7.6926 -5.2452 6.9525 23 6 3.9799 -3.4015 3.4910 24 6 3.4994 -1.9459 3.3682 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8898 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 -0.0562 -3.3146 1.2488 33 1 6.0526 -0.7348 3.1207 34 1 6.0668 -0.8837 1.3440 35 1 7.2418 -2.7803 2.6007 36 1 5.9650 -3.3008 1.4701 37 1 4.1550 -6.4593 5.1851 38 1 3.6215 -3.9807 2.6401 39 1 3.6033 -3.8359 4.4172 40 1 3.7052 -1.4111 4.2954 41 1 2.4287 -1.9317 3.1645 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588803268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:41 Heat of formation + Delta-G solvation = -91.145553 kcal Electronic energy + Delta-G solvation = -24435.955531 eV Core-core repulsion = 20931.191380 eV Total energy + Delta-G solvation = -3504.764150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.07188 -39.10861 -37.15603 -36.06612 -35.41381 -33.84914 -31.48161 -30.18135 -29.16616 -27.15605 -26.70737 -23.79588 -22.85791 -22.43888 -21.08981 -19.89399 -18.54977 -18.10172 -17.38055 -16.89020 -16.09132 -15.77169 -15.51675 -14.68164 -14.47591 -14.01619 -13.77446 -13.67019 -13.42283 -13.25815 -13.13114 -12.85856 -12.49494 -12.20314 -12.04752 -11.79677 -11.43077 -11.25662 -11.19191 -10.83437 -10.81878 -10.74333 -10.67525 -10.46492 -10.31436 -10.13844 -9.98387 -9.77477 -9.35638 -8.53606 -8.21998 -6.65057 -5.81196 -3.25622 2.24696 2.50878 3.32341 3.34972 3.38345 3.42627 3.44046 4.43846 4.47649 4.61530 4.85932 5.18207 5.26715 5.29173 5.30836 5.37107 5.54716 5.64092 5.77126 5.84759 5.89022 5.93598 6.00434 6.12180 6.15053 6.19619 6.28384 6.37899 6.45994 6.51597 6.54150 6.85221 6.96345 7.34545 7.60631 7.74738 7.86803 8.03458 8.40217 8.45394 9.16757 9.79457 10.37688 11.26009 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027281 B = 0.005205 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.098697 B = 5377.803476 C = 6050.013943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.069 4.069 3 C -0.156 4.156 4 C -0.097 4.097 5 H 0.126 0.874 6 C 0.476 3.524 7 O -0.473 6.473 8 O -0.511 6.511 9 C 0.527 3.473 10 O -0.544 6.544 11 N -0.579 5.579 12 C 0.096 3.904 13 C 0.132 3.868 14 N -0.591 5.591 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.900 5.900 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.159 3.841 24 C 0.085 3.915 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.408 0.592 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.254 0.746 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.609 10.899 -6.100 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.088 4.088 3 C -0.213 4.213 4 C -0.119 4.119 5 H 0.144 0.856 6 C 0.316 3.684 7 O -0.358 6.358 8 O -0.324 6.324 9 C 0.313 3.687 10 O -0.424 6.424 11 N -0.309 5.309 12 C -0.027 4.027 13 C 0.005 3.995 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.544 5.544 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.033 3.967 24 C -0.039 4.039 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.268 0.732 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.978 11.137 -6.472 15.701 hybrid contribution -0.039 -1.042 1.077 1.500 sum -9.017 10.095 -5.395 14.571 Atomic orbital electron populations 1.22127 0.93952 1.03713 1.01741 1.20844 0.95970 0.97019 0.95006 1.22063 1.04277 0.93848 1.01160 1.21371 0.94727 0.91812 1.03985 0.85618 1.22782 0.80518 0.91769 0.73372 1.90942 1.56115 1.46109 1.42584 1.84572 1.25846 1.36196 1.85824 1.19599 0.87903 0.78867 0.82292 1.90587 1.69206 1.46779 1.35805 1.47939 1.07596 1.53175 1.22240 1.22248 0.78615 1.00191 1.01682 1.21273 0.96106 0.90246 0.91854 1.44009 1.01103 1.64856 1.21402 1.19234 1.01827 1.09847 1.07554 0.91478 1.25083 0.99106 0.95545 0.99875 1.70045 1.26465 1.21114 1.36826 0.86270 0.78704 0.77372 0.84297 1.21433 1.21766 1.20390 1.21327 0.83795 0.88790 1.02802 1.22742 0.94314 0.99040 0.87818 0.92521 0.92495 0.90278 0.90191 0.89479 0.92603 0.93233 0.73234 0.91846 0.89910 0.91631 0.95727 0.93595 0.93426 0.88866 0.92055 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.67 37.16 0.32 -1.19 16 2 C -0.07 -0.83 2.14 -90.62 -0.19 -1.02 16 3 C -0.16 -1.80 8.87 37.16 0.33 -1.47 16 4 C -0.10 -1.33 1.48 -92.93 -0.14 -1.46 16 5 H 0.13 1.46 7.91 -51.92 -0.41 1.05 16 6 C 0.48 6.84 5.72 36.00 0.21 7.05 16 7 O -0.47 -8.89 12.75 -18.75 -0.24 -9.13 16 8 O -0.51 -5.33 10.34 -39.26 -0.41 -5.73 16 9 C 0.53 9.22 6.30 -10.99 -0.07 9.16 16 10 O -0.54 -10.42 13.07 5.56 0.07 -10.34 16 11 N -0.58 -10.89 2.74 -172.24 -0.47 -11.37 16 12 C 0.10 1.83 6.59 -3.60 -0.02 1.81 16 13 C 0.13 2.90 6.67 -3.60 -0.02 2.88 16 14 N -0.59 -14.96 2.96 -171.79 -0.51 -15.46 16 15 C -0.26 -6.95 9.57 -15.06 -0.14 -7.09 16 16 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 17 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 18 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 19 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.16 3.81 5.28 -3.39 -0.02 3.79 16 24 C 0.09 1.62 5.50 -3.39 -0.02 1.60 16 25 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.77 5.33 -51.93 -0.28 0.49 16 28 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 29 H 0.09 1.23 5.51 -51.93 -0.29 0.94 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.41 2.88 9.10 45.56 0.41 3.29 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.51 6.99 -51.93 -0.36 1.15 16 35 H 0.07 1.36 7.93 -51.93 -0.41 0.94 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.05 1.26 6.04 -51.93 -0.31 0.94 16 39 H 0.09 2.46 5.99 -51.92 -0.31 2.15 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 0.93 4.50 -51.93 -0.23 0.70 16 LS Contribution 316.27 15.07 4.77 4.77 Total: -1.00 -32.70 316.27 -6.17 -38.88 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.12 Total: 3.34 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 0.14 Total: 14.05 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.36 Total: -52.20 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.57 Total: -25.21 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.70 -6.17 -38.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588803268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.269 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds