Wall clock time and date at job start Tue Mar 31 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47322 * 2 1 4 4 C 1.52997 * 109.47352 * 120.00648 * 2 1 3 5 5 H 1.09009 * 109.47030 * 299.99443 * 4 2 1 6 6 C 1.50693 * 109.47326 * 59.99425 * 4 2 1 7 7 O 1.20831 * 120.00176 * 119.99911 * 6 4 2 8 8 O 1.34231 * 120.00284 * 300.00094 * 6 4 2 9 9 C 1.50696 * 109.47213 * 179.97438 * 4 2 1 10 10 O 1.21282 * 120.00165 * 359.97438 * 9 4 2 11 11 N 1.34777 * 120.00223 * 180.02562 * 9 4 2 12 12 C 1.46965 * 120.59591 * 179.97438 * 11 9 4 13 13 C 1.53368 * 108.63461 * 235.19896 * 12 11 9 14 14 N 1.46961 * 108.63758 * 310.57791 * 13 12 11 15 15 C 1.36940 * 120.59509 * 235.20411 * 14 13 12 16 16 H 1.07997 * 120.00120 * 28.28429 * 15 14 13 17 17 C 1.38816 * 119.99751 * 208.56808 * 15 14 13 18 18 N 1.31617 * 120.00015 * 17.29706 * 17 15 14 19 19 Si 1.86798 * 119.99365 * 197.30020 * 17 15 14 20 20 H 1.48501 * 109.47383 * 90.00060 * 19 17 15 21 21 H 1.48507 * 109.46798 * 209.99869 * 19 17 15 22 22 H 1.48496 * 109.47460 * 329.99621 * 19 17 15 23 23 C 1.46968 * 118.81094 * 55.47569 * 14 13 12 24 24 C 1.46970 * 120.59286 * 359.96887 * 11 9 4 25 25 H 1.09009 * 109.46598 * 299.99644 * 1 2 3 26 26 H 1.08994 * 109.47122 * 59.98983 * 1 2 3 27 27 H 1.08994 * 109.47165 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46695 * 240.00678 * 2 1 3 29 29 H 1.08997 * 109.47083 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47134 * 300.00672 * 3 2 1 31 31 H 1.09001 * 109.46682 * 60.00670 * 3 2 1 32 32 H 0.96697 * 117.00300 * 179.97438 * 8 6 4 33 33 H 1.09003 * 109.61044 * 115.45453 * 12 11 9 34 34 H 1.09000 * 109.60833 * 354.94638 * 12 11 9 35 35 H 1.08997 * 109.61062 * 190.82960 * 13 12 11 36 36 H 1.09006 * 109.60554 * 70.32000 * 13 12 11 37 37 H 0.97000 * 119.99467 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.61036 * 64.27036 * 23 14 13 39 39 H 1.09008 * 109.60681 * 184.77771 * 23 14 13 40 40 H 1.08993 * 109.61048 * 244.54057 * 24 11 9 41 41 H 1.08998 * 109.60475 * 5.05597 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5377 -2.1421 1.2491 7 8 2.3228 -3.0606 1.2490 8 8 0.2180 -2.3874 1.2492 9 6 3.5470 -0.7219 1.2488 10 8 4.1534 -0.1974 0.3388 11 7 4.2210 -1.3061 2.2592 12 6 5.6906 -1.3148 2.2717 13 6 6.1710 -2.7658 2.3973 14 7 5.4495 -3.4052 3.5065 15 6 6.1342 -3.9988 4.5331 16 1 7.1180 -3.6438 4.8025 17 6 5.5662 -5.0606 5.2238 18 7 4.5516 -5.7172 4.7026 19 14 6.2420 -5.5572 6.8929 20 1 5.5301 -4.8069 7.9585 21 1 6.0405 -7.0147 7.0947 22 1 7.6926 -5.2452 6.9525 23 6 3.9799 -3.4015 3.4910 24 6 3.4994 -1.9459 3.3682 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8898 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 -0.0562 -3.3146 1.2488 33 1 6.0526 -0.7348 3.1207 34 1 6.0668 -0.8837 1.3440 35 1 7.2418 -2.7803 2.6007 36 1 5.9650 -3.3008 1.4701 37 1 4.1550 -6.4593 5.1851 38 1 3.6215 -3.9807 2.6401 39 1 3.6033 -3.8359 4.4172 40 1 3.7052 -1.4111 4.2954 41 1 2.4287 -1.9317 3.1645 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588803268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:41 Heat of formation + Delta-G solvation = -113.530867 kcal Electronic energy + Delta-G solvation = -24436.926231 eV Core-core repulsion = 20931.191380 eV Total energy + Delta-G solvation = -3505.734851 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.31116 -40.41422 -38.73150 -37.20675 -36.51247 -35.60768 -33.31860 -31.91778 -30.41829 -28.47900 -27.95815 -25.58782 -24.53014 -23.67502 -22.42267 -21.25829 -20.03981 -19.21924 -18.92139 -18.01011 -17.77792 -17.12946 -16.95932 -16.51380 -15.85496 -15.42737 -15.29591 -15.24991 -14.91481 -14.74246 -14.41678 -14.09828 -13.69836 -13.37937 -13.26642 -13.20871 -12.89305 -12.70616 -12.55386 -12.47882 -12.25543 -12.22949 -11.97736 -11.88256 -11.73772 -11.65451 -11.61792 -11.46881 -10.76893 -10.56503 -9.81807 -8.64772 -7.87713 -5.36923 1.10909 1.25189 1.48603 1.49006 1.58538 1.95423 2.22430 2.50976 3.20662 3.26134 3.55264 3.58738 3.88065 4.15550 4.23346 4.23993 4.31929 4.37927 4.39107 4.54373 4.59590 4.64147 4.74176 4.80431 4.90068 5.05414 5.08099 5.15738 5.21111 5.28893 5.43847 5.47783 5.56814 5.62036 5.66443 5.82833 6.35108 6.41446 6.96983 7.04492 7.11093 7.79094 8.34153 9.17210 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027281 B = 0.005205 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.098697 B = 5377.803476 C = 6050.013943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.066 4.066 3 C -0.153 4.153 4 C -0.095 4.095 5 H 0.156 0.844 6 C 0.484 3.516 7 O -0.525 6.525 8 O -0.491 6.491 9 C 0.524 3.476 10 O -0.562 6.562 11 N -0.589 5.589 12 C 0.106 3.894 13 C 0.132 3.868 14 N -0.608 5.608 15 C -0.267 4.267 16 H 0.071 0.929 17 C -0.048 4.048 18 N -0.934 5.934 19 Si 0.972 3.028 20 H -0.281 1.281 21 H -0.297 1.297 22 H -0.269 1.269 23 C 0.168 3.832 24 C 0.103 3.897 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.426 0.574 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.000 1.000 37 H 0.251 0.749 38 H 0.017 0.983 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.880 12.727 -5.496 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C -0.210 4.210 4 C -0.117 4.117 5 H 0.174 0.826 6 C 0.326 3.674 7 O -0.413 6.413 8 O -0.305 6.305 9 C 0.311 3.689 10 O -0.442 6.442 11 N -0.319 5.319 12 C -0.017 4.017 13 C 0.006 3.994 14 N -0.332 5.332 15 C -0.397 4.397 16 H 0.089 0.911 17 C -0.243 4.243 18 N -0.580 5.580 19 Si 0.799 3.201 20 H -0.207 1.207 21 H -0.224 1.224 22 H -0.194 1.194 23 C 0.042 3.958 24 C -0.021 4.021 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.288 0.712 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.018 0.982 37 H 0.060 0.940 38 H 0.035 0.965 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.280 12.999 -5.890 17.588 hybrid contribution 0.328 -1.622 0.771 1.825 sum -9.952 11.377 -5.119 15.959 Atomic orbital electron populations 1.22080 0.91563 1.04020 1.03176 1.20865 0.97771 0.96777 0.93084 1.22002 1.02346 0.93783 1.02829 1.21450 0.91860 0.92047 1.06333 0.82631 1.22878 0.81160 0.91412 0.71946 1.90959 1.57581 1.47574 1.45232 1.84528 1.23406 1.37837 1.84738 1.20223 0.89609 0.77807 0.81214 1.90588 1.70223 1.47330 1.36096 1.47998 1.07452 1.53718 1.22765 1.22055 0.79286 0.97831 1.02578 1.21338 0.96576 0.91715 0.89807 1.44286 1.01829 1.65096 1.21953 1.19579 1.02165 1.09890 1.08080 0.91131 1.25859 0.99630 0.95665 1.03178 1.70214 1.27934 1.21657 1.38153 0.85209 0.78472 0.76397 0.79972 1.20728 1.22383 1.19385 1.21057 0.83232 0.91548 0.99945 1.22434 0.95531 0.95642 0.88525 0.91044 0.91148 0.90492 0.92276 0.92356 0.91102 0.91447 0.71204 0.90433 0.89262 0.90762 0.98229 0.94012 0.96538 0.91649 0.91050 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.67 71.98 0.62 -1.72 16 2 C -0.07 -1.42 2.14 -10.79 -0.02 -1.45 16 3 C -0.15 -3.13 8.87 71.98 0.64 -2.49 16 4 C -0.10 -2.40 1.48 -12.29 -0.02 -2.42 16 5 H 0.16 3.02 7.91 -2.38 -0.02 3.00 16 6 C 0.48 13.21 5.72 71.23 0.41 13.62 16 7 O -0.52 -19.88 12.75 21.95 0.28 -19.60 16 8 O -0.49 -8.98 10.34 -51.42 -0.53 -9.52 16 9 C 0.52 17.78 6.30 87.66 0.55 18.34 16 10 O -0.56 -21.24 13.07 -3.04 -0.04 -21.28 16 11 N -0.59 -21.71 2.74 -817.24 -2.24 -23.95 16 12 C 0.11 3.99 6.59 86.41 0.57 4.56 16 13 C 0.13 5.90 6.67 86.41 0.58 6.48 16 14 N -0.61 -31.34 2.96 -697.41 -2.06 -33.41 16 15 C -0.27 -14.69 9.57 84.03 0.80 -13.89 16 16 H 0.07 3.75 7.89 -2.91 -0.02 3.72 16 17 C -0.05 -2.64 4.91 84.86 0.42 -2.23 16 18 N -0.93 -55.29 11.19 21.65 0.24 -55.05 16 19 Si 0.97 44.27 29.59 68.60 2.03 46.30 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.17 8.25 5.28 86.55 0.46 8.71 16 24 C 0.10 3.84 5.50 86.55 0.48 4.32 16 25 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.08 1.23 5.33 -2.39 -0.01 1.22 16 28 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 29 H 0.06 1.56 5.51 -2.39 -0.01 1.55 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.43 5.06 9.10 -74.06 -0.67 4.39 16 33 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.09 3.23 6.99 -2.39 -0.02 3.21 16 35 H 0.07 3.10 7.93 -2.39 -0.02 3.08 16 36 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 37 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.02 0.91 6.04 -2.39 -0.01 0.90 16 39 H 0.07 3.55 5.99 -2.38 -0.01 3.53 16 40 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.08 2.57 4.50 -2.39 -0.01 2.56 16 Total: -1.00 -72.44 316.27 3.54 -68.90 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.38 Total: 15.78 kcal Atomic # 6 Polarization: 26.34 SS G_CDS: 5.48 Total: 31.82 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -4.06 Total: -112.41 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -0.29 Total: -50.39 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -72.44 3.54 -68.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588803268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.631 kcal (2) G-P(sol) polarization free energy of solvation -72.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds