Wall clock time and date at job start Tue Mar 31 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47307 * 2 1 4 4 C 1.52999 * 109.47628 * 240.00164 * 2 1 3 5 5 C 1.50693 * 109.47419 * 175.00216 * 4 2 1 6 6 O 1.20827 * 120.00244 * 359.97438 * 5 4 2 7 7 O 1.34228 * 120.00078 * 180.02562 * 5 4 2 8 8 N 1.46499 * 109.47092 * 119.99803 * 2 1 3 9 9 C 1.34777 * 120.00078 * 275.00173 * 8 2 1 10 10 O 1.21587 * 119.99964 * 354.91850 * 9 8 2 11 11 N 1.34777 * 120.00100 * 175.19331 * 9 8 2 12 12 C 1.46928 * 120.62795 * 4.46463 * 11 9 8 13 13 C 1.52765 * 109.00222 * 233.58172 * 12 11 9 14 14 C 1.53038 * 109.38436 * 305.58764 * 13 12 11 15 15 C 1.50702 * 109.44636 * 181.25738 * 14 13 12 16 16 H 1.08003 * 120.00127 * 239.93865 * 15 14 13 17 17 C 1.37879 * 120.00469 * 59.94069 * 15 14 13 18 18 N 1.31517 * 119.99557 * 359.97438 * 17 15 14 19 19 Si 1.86789 * 120.00274 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47341 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47316 * 120.00040 * 19 17 15 22 22 H 1.48503 * 109.47190 * 239.99888 * 19 17 15 23 23 C 1.53041 * 109.53841 * 61.24437 * 14 13 12 24 24 C 1.46926 * 120.62828 * 184.74374 * 11 9 8 25 25 H 1.09005 * 109.46602 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47285 * 299.99891 * 1 2 3 27 27 H 1.09003 * 109.47317 * 60.00547 * 1 2 3 28 28 H 1.09008 * 109.46750 * 295.00203 * 4 2 1 29 29 H 1.08992 * 109.47219 * 54.99242 * 4 2 1 30 30 H 0.96707 * 117.00118 * 179.97438 * 7 5 4 31 31 H 0.96996 * 120.00117 * 95.00207 * 8 2 1 32 32 H 1.08997 * 109.58471 * 353.41521 * 12 11 9 33 33 H 1.08998 * 109.58643 * 113.84895 * 12 11 9 34 34 H 1.09000 * 109.55786 * 185.55205 * 13 12 11 35 35 H 1.08995 * 109.38847 * 65.51830 * 13 12 11 36 36 H 1.09003 * 109.45930 * 301.22103 * 14 13 12 37 37 H 0.96995 * 119.99970 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.49467 * 178.68135 * 23 14 13 39 39 H 1.08998 * 109.52578 * 58.60174 * 23 14 13 40 40 H 1.09005 * 109.58165 * 246.15518 * 24 11 9 41 41 H 1.08991 * 109.59135 * 6.43547 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 8 4.1427 -0.0226 -0.4477 7 8 4.2122 -1.1773 -2.3305 8 7 2.0183 -0.6906 1.1962 9 6 2.1470 -0.0182 2.3571 10 8 1.9467 1.1806 2.3908 11 7 2.5030 -0.6737 3.4797 12 6 2.8489 -2.1010 3.4352 13 6 1.9970 -2.8513 4.4575 14 6 2.1688 -2.2051 5.8341 15 6 1.3531 -2.9631 6.8495 16 1 0.5735 -2.4587 7.4012 17 6 1.6020 -4.3004 7.0745 18 7 2.5511 -4.9147 6.4024 19 14 0.5905 -5.2400 8.3326 20 1 -0.4069 -4.3274 8.9472 21 1 -0.1126 -6.3637 7.6631 22 1 1.4870 -5.7758 9.3883 23 6 1.6930 -0.7515 5.7801 24 6 2.5468 0.0240 4.7720 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.7517 -1.7715 -1.2056 29 1 1.6055 -0.2618 -2.1369 30 1 5.1746 -1.0823 -2.3283 31 1 2.2490 -1.6317 1.1527 32 1 2.6511 -2.4940 2.4380 33 1 3.9036 -2.2291 3.6783 34 1 2.3142 -3.8932 4.5025 35 1 0.9493 -2.8025 4.1609 36 1 3.2205 -2.2326 6.1194 37 1 2.7260 -5.8556 6.5604 38 1 1.7938 -0.2989 6.7665 39 1 0.6481 -0.7215 5.4712 40 1 3.5765 0.0726 5.1262 41 1 2.1523 1.0333 4.6559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588996609.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:13 Heat of formation + Delta-G solvation = -128.029330 kcal Electronic energy + Delta-G solvation = -23356.871890 eV Core-core repulsion = 19850.508339 eV Total energy + Delta-G solvation = -3506.363551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.61565 -39.73580 -37.24779 -36.34731 -35.47647 -33.49586 -31.98293 -30.52569 -29.88712 -28.54787 -26.09033 -23.44735 -22.64851 -22.21037 -20.86382 -20.09052 -18.86932 -18.21525 -17.58907 -16.72908 -16.54409 -16.23112 -15.65491 -14.91251 -14.61765 -14.40779 -14.02683 -13.52995 -13.13372 -13.09797 -12.72943 -12.68746 -12.59778 -12.53506 -12.20298 -11.98314 -11.66423 -11.50479 -11.30908 -11.10655 -10.95981 -10.69463 -10.59543 -10.34120 -10.13314 -9.67609 -9.50081 -9.13510 -8.92374 -8.85141 -8.37025 -7.82315 -6.02794 -4.08652 2.04929 2.79973 3.06966 3.27010 3.35593 3.39969 3.69318 4.26501 4.36511 4.41280 4.81400 4.93592 5.19565 5.26638 5.30269 5.38425 5.55566 5.65396 5.79935 5.94644 6.01512 6.13577 6.17486 6.23448 6.31891 6.32915 6.53086 6.72194 6.76256 6.91939 7.03346 7.17378 7.26377 7.51786 7.68450 7.71639 7.94178 8.04747 8.39774 8.42778 8.95249 9.06639 9.56422 11.02708 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.003977 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.053062 B = 7038.995280 C = 7378.653794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.097 0.903 4 C -0.123 4.123 5 C 0.469 3.531 6 O -0.494 6.494 7 O -0.523 6.523 8 N -0.742 5.742 9 C 0.714 3.286 10 O -0.604 6.604 11 N -0.619 5.619 12 C 0.113 3.887 13 C -0.123 4.123 14 C 0.049 3.951 15 C -0.510 4.510 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.123 4.123 24 C 0.131 3.869 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.410 0.590 31 H 0.393 0.607 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.038 0.962 36 H 0.027 0.973 37 H 0.259 0.741 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 4.849 -16.999 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.064 3.936 3 H 0.115 0.885 4 C -0.161 4.161 5 C 0.310 3.690 6 O -0.380 6.380 7 O -0.335 6.335 8 N -0.400 5.400 9 C 0.416 3.584 10 O -0.484 6.484 11 N -0.355 5.355 12 C -0.010 4.010 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.548 4.548 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.162 4.162 24 C 0.008 3.992 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.138 0.862 30 H 0.268 0.732 31 H 0.229 0.771 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.285 5.677 -16.716 17.656 hybrid contribution 0.289 -1.215 0.598 1.385 sum 0.005 4.462 -16.118 16.724 Atomic orbital electron populations 1.22208 0.94469 1.02524 1.02969 1.20524 0.93713 0.97756 0.81572 0.88506 1.21776 0.87887 1.05086 1.01337 1.23469 0.91753 0.75309 0.78448 1.90835 1.70171 1.38866 1.38119 1.84521 1.27150 1.73055 1.48813 1.45195 1.72508 1.13380 1.08872 1.15712 0.77625 0.84800 0.80299 1.90830 1.59615 1.12813 1.85166 1.47367 1.70620 1.10928 1.06593 1.21758 1.00052 0.79790 0.99358 1.21937 0.96962 1.02311 0.94985 1.18625 0.96878 0.88993 0.92497 1.21268 1.18028 0.94669 1.20812 0.92648 1.24960 0.95205 0.97721 0.96115 1.69851 1.31322 1.10701 1.41318 0.86566 0.80251 0.79875 0.81487 1.19827 1.21108 1.21070 1.22020 0.98659 0.98724 0.96775 1.21544 0.99919 0.96087 0.81666 0.92164 0.91189 0.91633 0.87103 0.86193 0.73169 0.77071 0.92812 0.92190 0.87903 0.94333 0.95466 0.93091 0.92182 0.93032 0.92611 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.48 37.16 0.35 -1.30 16 2 C 0.17 1.99 2.18 -67.93 -0.15 1.84 16 3 H 0.10 1.38 7.32 -51.93 -0.38 1.00 16 4 C -0.12 -0.97 5.35 -27.89 -0.15 -1.12 16 5 C 0.47 4.84 8.19 36.00 0.29 5.13 16 6 O -0.49 -7.33 16.11 -18.75 -0.30 -7.63 16 7 O -0.52 -4.05 13.42 -39.25 -0.53 -4.57 16 8 N -0.74 -10.87 4.13 -58.68 -0.24 -11.11 16 9 C 0.71 13.54 8.26 -86.92 -0.72 12.82 16 10 O -0.60 -13.18 15.41 5.29 0.08 -13.10 16 11 N -0.62 -11.87 2.98 -178.76 -0.53 -12.40 16 12 C 0.11 2.09 6.40 -3.93 -0.03 2.07 16 13 C -0.12 -2.73 5.14 -26.83 -0.14 -2.86 16 14 C 0.05 1.17 2.07 -91.73 -0.19 0.98 16 15 C -0.51 -13.63 8.56 -34.44 -0.29 -13.93 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -24.47 11.30 55.43 0.63 -23.84 16 19 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.12 -2.59 5.30 -26.61 -0.14 -2.73 16 24 C 0.13 2.54 6.42 -3.71 -0.02 2.52 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.11 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.41 1.76 9.10 45.56 0.41 2.17 16 31 H 0.39 5.18 6.06 -40.82 -0.25 4.93 16 32 H 0.05 0.84 5.57 -51.93 -0.29 0.55 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 2.52 6.03 -51.93 -0.31 2.20 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.53 7.03 -51.93 -0.37 1.16 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -33.57 333.60 -7.54 -41.11 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.37 Total: 5.75 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -1.27 Total: 4.95 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.15 Total: -47.36 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.75 Total: -25.31 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.57 -7.54 -41.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588996609.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.919 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds