Wall clock time and date at job start Tue Mar 31 2020 06:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47307 * 2 1 4 4 C 1.52999 * 109.47628 * 240.00164 * 2 1 3 5 5 C 1.50693 * 109.47419 * 175.00216 * 4 2 1 6 6 O 1.20827 * 120.00244 * 359.97438 * 5 4 2 7 7 O 1.34228 * 120.00078 * 180.02562 * 5 4 2 8 8 N 1.46499 * 109.47092 * 119.99803 * 2 1 3 9 9 C 1.34777 * 120.00078 * 275.00173 * 8 2 1 10 10 O 1.21587 * 119.99964 * 354.91850 * 9 8 2 11 11 N 1.34777 * 120.00100 * 175.19331 * 9 8 2 12 12 C 1.46928 * 120.62795 * 4.46463 * 11 9 8 13 13 C 1.52765 * 109.00222 * 233.58172 * 12 11 9 14 14 C 1.53038 * 109.38436 * 305.58764 * 13 12 11 15 15 C 1.50702 * 109.44636 * 181.25738 * 14 13 12 16 16 H 1.08003 * 120.00127 * 239.93865 * 15 14 13 17 17 C 1.37879 * 120.00469 * 59.94069 * 15 14 13 18 18 N 1.31517 * 119.99557 * 359.97438 * 17 15 14 19 19 Si 1.86789 * 120.00274 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47341 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47316 * 120.00040 * 19 17 15 22 22 H 1.48503 * 109.47190 * 239.99888 * 19 17 15 23 23 C 1.53041 * 109.53841 * 61.24437 * 14 13 12 24 24 C 1.46926 * 120.62828 * 184.74374 * 11 9 8 25 25 H 1.09005 * 109.46602 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47285 * 299.99891 * 1 2 3 27 27 H 1.09003 * 109.47317 * 60.00547 * 1 2 3 28 28 H 1.09008 * 109.46750 * 295.00203 * 4 2 1 29 29 H 1.08992 * 109.47219 * 54.99242 * 4 2 1 30 30 H 0.96707 * 117.00118 * 179.97438 * 7 5 4 31 31 H 0.96996 * 120.00117 * 95.00207 * 8 2 1 32 32 H 1.08997 * 109.58471 * 353.41521 * 12 11 9 33 33 H 1.08998 * 109.58643 * 113.84895 * 12 11 9 34 34 H 1.09000 * 109.55786 * 185.55205 * 13 12 11 35 35 H 1.08995 * 109.38847 * 65.51830 * 13 12 11 36 36 H 1.09003 * 109.45930 * 301.22103 * 14 13 12 37 37 H 0.96995 * 119.99970 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.49467 * 178.68135 * 23 14 13 39 39 H 1.08998 * 109.52578 * 58.60174 * 23 14 13 40 40 H 1.09005 * 109.58165 * 246.15518 * 24 11 9 41 41 H 1.08991 * 109.59135 * 6.43547 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 8 4.1427 -0.0226 -0.4477 7 8 4.2122 -1.1773 -2.3305 8 7 2.0183 -0.6906 1.1962 9 6 2.1470 -0.0182 2.3571 10 8 1.9467 1.1806 2.3908 11 7 2.5030 -0.6737 3.4797 12 6 2.8489 -2.1010 3.4352 13 6 1.9970 -2.8513 4.4575 14 6 2.1688 -2.2051 5.8341 15 6 1.3531 -2.9631 6.8495 16 1 0.5735 -2.4587 7.4012 17 6 1.6020 -4.3004 7.0745 18 7 2.5511 -4.9147 6.4024 19 14 0.5905 -5.2400 8.3326 20 1 -0.4069 -4.3274 8.9472 21 1 -0.1126 -6.3637 7.6631 22 1 1.4870 -5.7758 9.3883 23 6 1.6930 -0.7515 5.7801 24 6 2.5468 0.0240 4.7720 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.7517 -1.7715 -1.2056 29 1 1.6055 -0.2618 -2.1369 30 1 5.1746 -1.0823 -2.3283 31 1 2.2490 -1.6317 1.1527 32 1 2.6511 -2.4940 2.4380 33 1 3.9036 -2.2291 3.6783 34 1 2.3142 -3.8932 4.5025 35 1 0.9493 -2.8025 4.1609 36 1 3.2205 -2.2326 6.1194 37 1 2.7260 -5.8556 6.5604 38 1 1.7938 -0.2989 6.7665 39 1 0.6481 -0.7215 5.4712 40 1 3.5765 0.0726 5.1262 41 1 2.1523 1.0333 4.6559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588996609.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:12 Heat of formation + Delta-G solvation = -151.129705 kcal Electronic energy + Delta-G solvation = -23357.873598 eV Core-core repulsion = 19850.508339 eV Total energy + Delta-G solvation = -3507.365258 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.64570 -40.96306 -38.71024 -37.30788 -36.56873 -35.32975 -33.50088 -32.10191 -31.43168 -29.32813 -27.93443 -24.97745 -24.05821 -23.54959 -22.00979 -21.40521 -20.43128 -19.12730 -18.94039 -18.25942 -17.63690 -17.47385 -16.71964 -16.53572 -16.29920 -15.76711 -15.29071 -14.91126 -14.67995 -14.51756 -14.29119 -14.07053 -13.71670 -13.51187 -13.22514 -13.15225 -13.12432 -12.83560 -12.78920 -12.45895 -12.42120 -12.15050 -12.00681 -11.95521 -11.55220 -11.46917 -11.17834 -10.99582 -10.77538 -10.39852 -10.15337 -9.37432 -8.07032 -6.20269 1.29327 1.41095 1.44441 1.54620 1.75351 2.16282 2.22975 2.45260 2.94668 3.19549 3.57570 4.08068 4.12629 4.20952 4.24432 4.35100 4.46254 4.53022 4.58565 4.62025 4.66758 4.71282 4.86470 4.88446 4.96516 5.04752 5.21369 5.25042 5.35649 5.43968 5.51508 5.63502 5.67283 5.69775 5.99110 6.07668 6.14257 6.40132 6.89136 7.00870 7.05501 7.47518 7.62285 8.96718 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.003977 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.053062 B = 7038.995280 C = 7378.653794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.113 4.113 5 C 0.473 3.527 6 O -0.549 6.549 7 O -0.514 6.514 8 N -0.729 5.729 9 C 0.708 3.292 10 O -0.637 6.637 11 N -0.625 5.625 12 C 0.124 3.876 13 C -0.111 4.111 14 C 0.045 3.955 15 C -0.533 4.533 16 H 0.047 0.953 17 C 0.018 3.982 18 N -0.913 5.913 19 Si 0.950 3.050 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.282 1.282 23 C -0.111 4.111 24 C 0.136 3.864 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.097 0.903 28 H 0.139 0.861 29 H 0.158 0.842 30 H 0.424 0.576 31 H 0.401 0.599 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.030 0.970 36 H 0.001 0.999 37 H 0.261 0.739 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 3.969 -18.938 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 H 0.085 0.915 4 C -0.151 4.151 5 C 0.317 3.683 6 O -0.439 6.439 7 O -0.327 6.327 8 N -0.387 5.387 9 C 0.410 3.590 10 O -0.520 6.520 11 N -0.361 5.361 12 C 0.001 3.999 13 C -0.150 4.150 14 C 0.026 3.974 15 C -0.571 4.571 16 H 0.066 0.934 17 C -0.180 4.180 18 N -0.552 5.552 19 Si 0.776 3.224 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.208 1.208 23 C -0.150 4.150 24 C 0.012 3.988 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.116 0.884 28 H 0.157 0.843 29 H 0.176 0.824 30 H 0.286 0.714 31 H 0.239 0.761 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.019 0.981 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.037 4.767 -18.715 19.340 hybrid contribution 0.558 -0.939 1.142 1.580 sum -0.479 3.827 -17.573 17.992 Atomic orbital electron populations 1.22143 0.92984 1.03457 1.02825 1.20730 0.94802 0.96608 0.81959 0.91541 1.21823 0.86236 1.06555 1.00465 1.23921 0.92696 0.73948 0.77751 1.90833 1.71399 1.41437 1.40256 1.84489 1.28565 1.72111 1.47541 1.45213 1.71366 1.13660 1.08446 1.15929 0.77423 0.84573 0.81123 1.90800 1.61029 1.14362 1.85783 1.47378 1.70935 1.11039 1.06717 1.21619 0.99034 0.79165 1.00035 1.21687 0.97018 1.01290 0.95008 1.18604 0.94923 0.90710 0.93118 1.21568 1.18367 0.95405 1.21764 0.93436 1.25628 0.96179 0.98475 0.97763 1.69957 1.32154 1.10961 1.42166 0.85634 0.78861 0.78584 0.79318 1.19703 1.20469 1.20767 1.21854 0.98267 0.97205 0.97638 1.21423 0.99852 0.95782 0.81702 0.90608 0.94685 0.88450 0.84271 0.82413 0.71444 0.76110 0.89471 0.92402 0.90119 0.95093 0.98071 0.92924 0.91762 0.93838 0.92010 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.48 71.98 0.68 -2.11 16 2 C 0.16 3.53 2.18 44.99 0.10 3.63 16 3 H 0.07 1.88 7.32 -2.39 -0.02 1.86 16 4 C -0.11 -1.38 5.35 29.85 0.16 -1.22 16 5 C 0.47 8.67 8.19 71.23 0.58 9.25 16 6 O -0.55 -15.91 16.11 21.96 0.35 -15.56 16 7 O -0.51 -6.47 13.42 -51.39 -0.69 -7.16 16 8 N -0.73 -20.42 4.13 -457.82 -1.89 -22.31 16 9 C 0.71 26.69 8.26 179.05 1.48 28.16 16 10 O -0.64 -28.18 15.41 -3.99 -0.06 -28.24 16 11 N -0.62 -23.83 2.98 -837.74 -2.50 -26.32 16 12 C 0.12 4.50 6.40 86.22 0.55 5.06 16 13 C -0.11 -4.95 5.14 30.53 0.16 -4.79 16 14 C 0.04 2.20 2.07 -11.51 -0.02 2.18 16 15 C -0.53 -28.90 8.56 25.60 0.22 -28.68 16 16 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 17 C 0.02 0.99 5.30 84.65 0.45 1.44 16 18 N -0.91 -50.32 11.30 21.45 0.24 -50.08 16 19 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 C -0.11 -4.74 5.30 30.67 0.16 -4.58 16 24 C 0.14 5.32 6.42 86.36 0.55 5.87 16 25 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.14 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.42 2.69 9.10 -74.05 -0.67 2.01 16 31 H 0.40 9.66 6.06 -92.71 -0.56 9.10 16 32 H 0.09 2.55 5.57 -2.39 -0.01 2.54 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 3.98 6.03 -2.39 -0.01 3.97 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 36 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 38 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 41 H 0.08 3.08 7.03 -2.39 -0.02 3.06 16 Total: -1.00 -74.56 333.60 2.37 -72.18 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -0.18 Total: 18.51 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 5.07 Total: 14.21 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -4.14 Total: -98.71 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.40 Total: -50.96 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -74.56 2.37 -72.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588996609.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.945 kcal (2) G-P(sol) polarization free energy of solvation -74.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds