Wall clock time and date at job start Tue Mar 31 2020 06:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47436 * 2 1 4 4 C 1.53002 * 109.46916 * 240.00420 * 2 1 3 5 5 C 1.50706 * 109.47070 * 175.00079 * 4 2 1 6 6 O 1.20828 * 119.99731 * 359.97438 * 5 4 2 7 7 O 1.34227 * 119.99880 * 180.02562 * 5 4 2 8 8 N 1.46497 * 109.47218 * 120.00374 * 2 1 3 9 9 C 1.34778 * 119.99831 * 274.99769 * 8 2 1 10 10 O 1.21587 * 120.00218 * 5.07137 * 9 8 2 11 11 N 1.34773 * 119.99745 * 185.06706 * 9 8 2 12 12 C 1.46925 * 120.63303 * 354.96817 * 11 9 8 13 13 C 1.53186 * 108.77865 * 126.36724 * 12 11 9 14 14 C 1.53048 * 109.31406 * 54.63658 * 13 12 11 15 15 C 1.53042 * 109.53376 * 298.63799 * 14 13 12 16 16 H 1.09001 * 109.49590 * 301.40822 * 15 14 13 17 17 C 1.50700 * 109.52262 * 181.33308 * 15 14 13 18 18 H 1.08003 * 120.00158 * 0.13892 * 17 15 14 19 19 C 1.37876 * 120.00068 * 180.14552 * 17 15 14 20 20 N 1.31510 * 119.99953 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99856 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47508 * 59.99840 * 21 19 17 23 23 H 1.48508 * 109.47038 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46940 * 299.99325 * 21 19 17 25 25 C 1.46931 * 120.63076 * 174.94115 * 11 9 8 26 26 H 1.09008 * 109.47162 * 59.99662 * 1 2 3 27 27 H 1.08997 * 109.47317 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46901 * 299.99994 * 1 2 3 29 29 H 1.08998 * 109.46998 * 295.00005 * 4 2 1 30 30 H 1.09000 * 109.47664 * 55.00100 * 4 2 1 31 31 H 0.96700 * 116.99994 * 179.97438 * 7 5 4 32 32 H 0.96997 * 119.99981 * 95.00321 * 8 2 1 33 33 H 1.09007 * 109.58700 * 246.15433 * 12 11 9 34 34 H 1.08997 * 109.58832 * 6.57713 * 12 11 9 35 35 H 1.09000 * 109.50138 * 174.58387 * 13 12 11 36 36 H 1.08996 * 109.50107 * 294.68580 * 13 12 11 37 37 H 1.08996 * 109.45989 * 178.61460 * 14 13 12 38 38 H 1.09004 * 109.44691 * 58.64342 * 14 13 12 39 39 H 0.97003 * 120.00137 * 180.02562 * 20 19 17 40 40 H 1.08992 * 109.58358 * 353.42347 * 25 11 9 41 41 H 1.08998 * 109.58176 * 113.84592 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 8 4.1427 -0.0226 -0.4478 7 8 4.2120 -1.1772 -2.3308 8 7 2.0183 -0.6907 1.1961 9 6 2.1471 -0.0183 2.3571 10 8 1.7719 1.1355 2.4363 11 7 2.6917 -0.6251 3.4303 12 6 3.0485 -2.0496 3.3840 13 6 4.5155 -2.2041 3.7970 14 6 4.7289 -1.5468 5.1626 15 6 4.4086 -0.0533 5.0672 16 1 5.0486 0.4088 4.3156 17 6 4.6501 0.5999 6.4037 18 1 4.9997 0.0097 7.2379 19 6 4.4247 1.9509 6.5615 20 7 3.9994 2.6697 5.5456 21 14 4.7248 2.7606 8.2179 22 1 6.1484 2.5870 8.6031 23 1 4.4108 4.2091 8.1249 24 1 3.8543 2.1297 9.2422 25 6 2.9404 0.1256 4.6686 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7515 -1.7714 -1.2057 30 1 1.6054 -0.2616 -2.1371 31 1 5.1744 -1.0822 -2.3286 32 1 2.2491 -1.6318 1.1525 33 1 2.4142 -2.6077 4.0728 34 1 2.9124 -2.4277 2.3708 35 1 4.7662 -3.2630 3.8599 36 1 5.1545 -1.7218 3.0574 37 1 5.7665 -1.6768 5.4700 38 1 4.0714 -2.0130 5.8965 39 1 3.8412 3.6203 5.6565 40 1 2.7329 1.1827 4.5029 41 1 2.2973 -0.2552 5.4620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588997175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:20 Heat of formation + Delta-G solvation = -125.122626 kcal Electronic energy + Delta-G solvation = -23703.289055 eV Core-core repulsion = 20197.051548 eV Total energy + Delta-G solvation = -3506.237507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47953 -39.50764 -37.14306 -36.21520 -35.26821 -33.36340 -31.87263 -30.87981 -29.54464 -28.44652 -25.00283 -24.48075 -22.70994 -21.75157 -20.78679 -19.97035 -18.75401 -18.08285 -17.44386 -16.62479 -16.41781 -16.08375 -15.47610 -14.72810 -14.42340 -14.06015 -13.92622 -13.63582 -13.33946 -13.13571 -12.67191 -12.57889 -12.44307 -12.37181 -12.03156 -11.83667 -11.78944 -11.54735 -11.08359 -10.91011 -10.80977 -10.56674 -10.46030 -10.31686 -10.14852 -9.79515 -9.32214 -9.02055 -8.87342 -8.66543 -8.33907 -7.52988 -5.90345 -3.99716 2.16840 2.89691 3.27253 3.38183 3.43009 3.44456 4.00507 4.42724 4.47194 4.52859 4.88507 5.03347 5.27104 5.34007 5.39046 5.40764 5.48708 5.58539 5.68096 5.70403 6.01618 6.06925 6.23837 6.28636 6.38769 6.43017 6.66748 6.75404 6.88831 6.92713 7.07128 7.15371 7.44587 7.60511 7.82677 7.83795 8.02971 8.15851 8.49409 8.71212 9.03754 9.39708 9.65343 11.14601 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.004661 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.472446 B = 6005.771725 C = 6301.116000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.171 3.829 3 H 0.096 0.904 4 C -0.120 4.120 5 C 0.464 3.536 6 O -0.486 6.486 7 O -0.525 6.525 8 N -0.747 5.747 9 C 0.709 3.291 10 O -0.584 6.584 11 N -0.623 5.623 12 C 0.118 3.882 13 C -0.133 4.133 14 C -0.109 4.109 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.878 5.878 21 Si 0.892 3.108 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.131 3.869 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.409 0.591 32 H 0.386 0.614 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.264 0.736 40 H 0.122 0.878 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 -11.551 -15.204 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.065 3.935 3 H 0.114 0.886 4 C -0.159 4.159 5 C 0.305 3.695 6 O -0.371 6.371 7 O -0.338 6.338 8 N -0.406 5.406 9 C 0.411 3.589 10 O -0.461 6.461 11 N -0.359 5.359 12 C -0.006 4.006 13 C -0.172 4.172 14 C -0.146 4.146 15 C 0.020 3.980 16 H 0.046 0.954 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.516 5.516 21 Si 0.720 3.280 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.203 1.203 25 C 0.010 3.990 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.268 0.732 32 H 0.222 0.778 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.140 0.860 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.068 -10.332 -14.917 18.840 hybrid contribution 1.025 -0.073 0.783 1.292 sum -4.043 -10.404 -14.134 18.010 Atomic orbital electron populations 1.22194 0.94683 1.02028 1.03107 1.20490 0.93621 0.97791 0.81592 0.88618 1.21766 0.87929 1.04733 1.01434 1.23490 0.91763 0.75660 0.78603 1.90894 1.70036 1.38275 1.37859 1.84505 1.27138 1.73217 1.48968 1.45250 1.73282 1.12991 1.09093 1.15815 0.78662 0.84509 0.79957 1.90897 1.55524 1.16289 1.83372 1.47737 1.64036 1.09772 1.14381 1.21445 0.96481 0.83286 0.99407 1.21945 0.95758 0.99572 0.99914 1.21604 1.00228 0.98940 0.93867 1.18981 0.92369 0.89648 0.96990 0.95357 1.21035 1.45687 0.93299 0.96043 0.92499 1.25056 0.94966 0.97459 0.96533 1.69895 1.44568 1.07212 1.29876 0.86667 0.78588 0.78369 0.84403 1.20357 1.21293 1.20274 1.22147 0.97907 0.98952 0.80002 0.91831 0.92596 0.90917 0.87437 0.86360 0.73216 0.77842 0.92274 0.92482 0.92547 0.92175 0.93171 0.93260 0.92638 0.85973 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.48 37.16 0.35 -1.40 16 2 C 0.17 2.21 2.10 -67.93 -0.14 2.07 16 3 H 0.10 1.58 7.47 -51.93 -0.39 1.19 16 4 C -0.12 -1.04 5.35 -27.88 -0.15 -1.19 16 5 C 0.46 5.32 8.19 36.01 0.29 5.61 16 6 O -0.49 -8.14 16.11 -18.75 -0.30 -8.45 16 7 O -0.53 -4.51 13.42 -39.25 -0.53 -5.03 16 8 N -0.75 -11.64 4.13 -58.68 -0.24 -11.89 16 9 C 0.71 15.22 8.26 -86.92 -0.72 14.51 16 10 O -0.58 -15.16 15.45 5.29 0.08 -15.08 16 11 N -0.62 -13.29 2.97 -178.51 -0.53 -13.82 16 12 C 0.12 1.94 6.43 -3.71 -0.02 1.92 16 13 C -0.13 -2.28 6.08 -26.61 -0.16 -2.45 16 14 C -0.11 -2.26 5.11 -26.68 -0.14 -2.40 16 15 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 16 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 17 C -0.52 -14.61 8.57 -34.44 -0.29 -14.91 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 20 N -0.88 -26.59 11.39 55.43 0.63 -25.96 16 21 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.13 3.33 5.39 -3.71 -0.02 3.31 16 26 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 29 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.41 2.18 9.10 45.56 0.41 2.60 16 32 H 0.39 4.98 6.06 -40.82 -0.25 4.73 16 33 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 34 H 0.06 0.75 5.57 -51.93 -0.29 0.46 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.12 3.65 5.15 -51.93 -0.27 3.38 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -36.60 333.90 -7.57 -44.17 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.39 Total: 6.63 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.30 Total: 7.59 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.14 Total: -51.66 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.75 Total: -28.56 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.60 -7.57 -44.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588997175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.951 kcal (2) G-P(sol) polarization free energy of solvation -36.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds