Wall clock time and date at job start Tue Mar 31 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47436 * 2 1 4 4 C 1.53002 * 109.46916 * 240.00420 * 2 1 3 5 5 C 1.50706 * 109.47070 * 175.00079 * 4 2 1 6 6 O 1.20828 * 119.99731 * 359.97438 * 5 4 2 7 7 O 1.34227 * 119.99880 * 180.02562 * 5 4 2 8 8 N 1.46497 * 109.47218 * 120.00374 * 2 1 3 9 9 C 1.34778 * 119.99831 * 274.99769 * 8 2 1 10 10 O 1.21587 * 120.00218 * 5.07137 * 9 8 2 11 11 N 1.34773 * 119.99745 * 185.06706 * 9 8 2 12 12 C 1.46925 * 120.63303 * 354.96817 * 11 9 8 13 13 C 1.53186 * 108.77865 * 126.36724 * 12 11 9 14 14 C 1.53048 * 109.31406 * 54.63658 * 13 12 11 15 15 C 1.53042 * 109.53376 * 298.63799 * 14 13 12 16 16 H 1.09001 * 109.49590 * 301.40822 * 15 14 13 17 17 C 1.50700 * 109.52262 * 181.33308 * 15 14 13 18 18 H 1.08003 * 120.00158 * 0.13892 * 17 15 14 19 19 C 1.37876 * 120.00068 * 180.14552 * 17 15 14 20 20 N 1.31510 * 119.99953 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99856 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47508 * 59.99840 * 21 19 17 23 23 H 1.48508 * 109.47038 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46940 * 299.99325 * 21 19 17 25 25 C 1.46931 * 120.63076 * 174.94115 * 11 9 8 26 26 H 1.09008 * 109.47162 * 59.99662 * 1 2 3 27 27 H 1.08997 * 109.47317 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46901 * 299.99994 * 1 2 3 29 29 H 1.08998 * 109.46998 * 295.00005 * 4 2 1 30 30 H 1.09000 * 109.47664 * 55.00100 * 4 2 1 31 31 H 0.96700 * 116.99994 * 179.97438 * 7 5 4 32 32 H 0.96997 * 119.99981 * 95.00321 * 8 2 1 33 33 H 1.09007 * 109.58700 * 246.15433 * 12 11 9 34 34 H 1.08997 * 109.58832 * 6.57713 * 12 11 9 35 35 H 1.09000 * 109.50138 * 174.58387 * 13 12 11 36 36 H 1.08996 * 109.50107 * 294.68580 * 13 12 11 37 37 H 1.08996 * 109.45989 * 178.61460 * 14 13 12 38 38 H 1.09004 * 109.44691 * 58.64342 * 14 13 12 39 39 H 0.97003 * 120.00137 * 180.02562 * 20 19 17 40 40 H 1.08992 * 109.58358 * 353.42347 * 25 11 9 41 41 H 1.08998 * 109.58176 * 113.84592 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 8 4.1427 -0.0226 -0.4478 7 8 4.2120 -1.1772 -2.3308 8 7 2.0183 -0.6907 1.1961 9 6 2.1471 -0.0183 2.3571 10 8 1.7719 1.1355 2.4363 11 7 2.6917 -0.6251 3.4303 12 6 3.0485 -2.0496 3.3840 13 6 4.5155 -2.2041 3.7970 14 6 4.7289 -1.5468 5.1626 15 6 4.4086 -0.0533 5.0672 16 1 5.0486 0.4088 4.3156 17 6 4.6501 0.5999 6.4037 18 1 4.9997 0.0097 7.2379 19 6 4.4247 1.9509 6.5615 20 7 3.9994 2.6697 5.5456 21 14 4.7248 2.7606 8.2179 22 1 6.1484 2.5870 8.6031 23 1 4.4108 4.2091 8.1249 24 1 3.8543 2.1297 9.2422 25 6 2.9404 0.1256 4.6686 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7515 -1.7714 -1.2057 30 1 1.6054 -0.2616 -2.1371 31 1 5.1744 -1.0822 -2.3286 32 1 2.2491 -1.6318 1.1525 33 1 2.4142 -2.6077 4.0728 34 1 2.9124 -2.4277 2.3708 35 1 4.7662 -3.2630 3.8599 36 1 5.1545 -1.7218 3.0574 37 1 5.7665 -1.6768 5.4700 38 1 4.0714 -2.0130 5.8965 39 1 3.8412 3.6203 5.6565 40 1 2.7329 1.1827 4.5029 41 1 2.2973 -0.2552 5.4620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588997175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:19 Heat of formation + Delta-G solvation = -153.010914 kcal Electronic energy + Delta-G solvation = -23704.498382 eV Core-core repulsion = 20197.051548 eV Total energy + Delta-G solvation = -3507.446834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59388 -40.91346 -38.66430 -37.26783 -36.53047 -35.32511 -33.62954 -32.25123 -31.32575 -29.31209 -27.04033 -26.11228 -23.76834 -23.43270 -21.98174 -21.42542 -20.39900 -19.07378 -18.92693 -18.20435 -17.57696 -17.48198 -16.69967 -16.58366 -16.16102 -15.49804 -15.32722 -15.19252 -14.63850 -14.57157 -14.24537 -14.10796 -13.62220 -13.59514 -13.28721 -13.19900 -12.87128 -12.84175 -12.66811 -12.46617 -12.28495 -12.25508 -12.00805 -11.84093 -11.63648 -11.55374 -11.18649 -10.95997 -10.82254 -10.51564 -10.10799 -9.22313 -8.09428 -6.28158 1.30359 1.39909 1.42589 1.50979 1.82135 2.16665 2.37619 2.42123 3.06452 3.20334 3.58105 4.01496 4.11407 4.16484 4.24967 4.26744 4.52678 4.58914 4.63567 4.67645 4.72492 4.79679 4.83119 4.88438 5.06097 5.08157 5.25812 5.27287 5.33417 5.38064 5.55732 5.66520 5.67791 5.70718 5.89052 5.99050 6.19266 6.36363 6.85420 7.05735 7.19640 7.42107 7.76775 8.93777 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.004661 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.472446 B = 6005.771725 C = 6301.116000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.163 3.837 3 H 0.048 0.952 4 C -0.108 4.108 5 C 0.470 3.530 6 O -0.552 6.552 7 O -0.512 6.512 8 N -0.725 5.725 9 C 0.699 3.301 10 O -0.642 6.642 11 N -0.631 5.631 12 C 0.113 3.887 13 C -0.125 4.125 14 C -0.103 4.103 15 C 0.038 3.962 16 H -0.023 1.023 17 C -0.537 4.537 18 H 0.064 0.936 19 C 0.007 3.993 20 N -0.917 5.917 21 Si 0.962 3.038 22 H -0.267 1.267 23 H -0.289 1.289 24 H -0.264 1.264 25 C 0.145 3.855 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.029 0.971 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.423 0.577 32 H 0.403 0.597 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.040 0.960 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.259 0.741 40 H 0.072 0.928 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.056 -15.028 -16.440 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.058 3.942 3 H 0.067 0.933 4 C -0.145 4.145 5 C 0.314 3.686 6 O -0.442 6.442 7 O -0.325 6.325 8 N -0.384 5.384 9 C 0.400 3.600 10 O -0.524 6.524 11 N -0.367 5.367 12 C -0.010 4.010 13 C -0.163 4.163 14 C -0.141 4.141 15 C 0.019 3.981 16 H -0.005 1.005 17 C -0.576 4.576 18 H 0.083 0.917 19 C -0.192 4.192 20 N -0.556 5.556 21 Si 0.786 3.214 22 H -0.192 1.192 23 H -0.215 1.215 24 H -0.189 1.189 25 C 0.022 3.978 26 H 0.112 0.888 27 H 0.104 0.896 28 H 0.049 0.951 29 H 0.167 0.833 30 H 0.174 0.826 31 H 0.284 0.716 32 H 0.241 0.759 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.619 -13.911 -16.220 22.095 hybrid contribution 1.239 0.980 1.054 1.899 sum -4.380 -12.931 -15.166 20.406 Atomic orbital electron populations 1.22107 0.92666 1.03753 1.02520 1.20692 0.95171 0.96010 0.82366 0.93349 1.21814 0.85836 1.06830 1.00043 1.24040 0.92875 0.73992 0.77737 1.90903 1.71505 1.41328 1.40483 1.84473 1.28496 1.72104 1.47464 1.45056 1.71948 1.13501 1.07865 1.16139 0.78427 0.84086 0.81320 1.90849 1.57896 1.19120 1.84492 1.47653 1.64144 1.11730 1.13135 1.21820 0.96341 0.80277 1.02529 1.21896 0.95899 1.01798 0.96742 1.21493 1.00455 0.95337 0.96811 1.18905 0.91571 0.93021 0.94597 1.00476 1.21500 1.45116 0.93835 0.97138 0.91744 1.25971 0.94671 0.98302 1.00295 1.70128 1.46005 1.07069 1.32380 0.85561 0.79013 0.76985 0.79810 1.19238 1.21532 1.18882 1.21526 0.97523 0.96911 0.81864 0.88831 0.89571 0.95147 0.83290 0.82564 0.71557 0.75877 0.89919 0.88558 0.87611 0.94098 0.93109 0.92046 0.93224 0.90963 0.94753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.48 71.98 0.68 -2.35 16 2 C 0.16 4.07 2.10 44.99 0.09 4.17 16 3 H 0.05 1.69 7.47 -2.39 -0.02 1.67 16 4 C -0.11 -1.47 5.35 29.85 0.16 -1.31 16 5 C 0.47 9.84 8.19 71.24 0.58 10.42 16 6 O -0.55 -18.81 16.11 21.96 0.35 -18.45 16 7 O -0.51 -7.27 13.42 -51.39 -0.69 -7.96 16 8 N -0.72 -22.11 4.13 -457.82 -1.89 -24.00 16 9 C 0.70 31.21 8.26 179.06 1.48 32.69 16 10 O -0.64 -36.00 15.45 -3.99 -0.06 -36.06 16 11 N -0.63 -27.49 2.97 -836.94 -2.49 -29.98 16 12 C 0.11 3.41 6.43 86.36 0.56 3.97 16 13 C -0.13 -3.99 6.08 30.67 0.19 -3.81 16 14 C -0.10 -4.22 5.11 30.62 0.16 -4.07 16 15 C 0.04 2.08 2.25 -11.46 -0.03 2.05 16 16 H -0.02 -1.45 8.14 -2.39 -0.02 -1.47 16 17 C -0.54 -31.03 8.57 25.60 0.22 -30.81 16 18 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 19 C 0.01 0.40 5.30 84.66 0.45 0.85 16 20 N -0.92 -59.03 11.39 21.45 0.24 -58.79 16 21 Si 0.96 45.98 29.54 68.60 2.03 48.00 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 25 C 0.14 7.79 5.39 86.36 0.47 8.25 16 26 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.03 0.87 8.09 -2.39 -0.02 0.85 16 29 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.42 3.61 9.10 -74.06 -0.67 2.94 16 32 H 0.40 9.24 6.06 -92.71 -0.56 8.68 16 33 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.10 2.15 5.57 -2.39 -0.01 2.14 16 35 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 40 H 0.07 4.66 5.15 -2.39 -0.01 4.65 16 41 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -90.63 333.90 2.31 -88.32 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -0.18 Total: 18.86 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 5.00 Total: 20.06 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -4.14 Total: -112.77 kcal Atomic # 8 Polarization: -62.08 SS G_CDS: -0.40 Total: -62.48 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -90.63 2.31 -88.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588997175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.695 kcal (2) G-P(sol) polarization free energy of solvation -90.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds