Wall clock time and date at job start Tue Mar 31 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47060 * 2 1 4 4 C 1.53001 * 109.47197 * 120.00408 * 2 1 3 5 5 C 1.50702 * 109.47052 * 185.00122 * 4 2 1 6 6 O 1.20829 * 120.00021 * 359.97438 * 5 4 2 7 7 O 1.34228 * 119.99782 * 179.97438 * 5 4 2 8 8 N 1.46503 * 109.47140 * 240.00134 * 2 1 3 9 9 C 1.34780 * 119.99947 * 84.99763 * 8 2 1 10 10 O 1.21582 * 120.00110 * 354.90481 * 9 8 2 11 11 N 1.34777 * 119.99628 * 174.89866 * 9 8 2 12 12 C 1.46923 * 120.63427 * 5.05234 * 11 9 8 13 13 C 1.53189 * 108.77700 * 233.58276 * 12 11 9 14 14 C 1.53035 * 109.31346 * 305.36876 * 13 12 11 15 15 C 1.53036 * 109.54008 * 61.36417 * 14 13 12 16 16 H 1.08997 * 109.50260 * 58.58668 * 15 14 13 17 17 C 1.50705 * 109.49586 * 178.68520 * 15 14 13 18 18 H 1.07993 * 120.00163 * 35.06467 * 17 15 14 19 19 C 1.37881 * 119.99726 * 215.06290 * 17 15 14 20 20 N 1.31518 * 119.99935 * 174.97714 * 19 17 15 21 21 Si 1.86792 * 119.99990 * 354.98380 * 19 17 15 22 22 H 1.48498 * 109.47354 * 94.94569 * 21 19 17 23 23 H 1.48501 * 109.47303 * 214.94379 * 21 19 17 24 24 H 1.48505 * 109.47435 * 334.94437 * 21 19 17 25 25 C 1.46925 * 120.62774 * 184.77323 * 11 9 8 26 26 H 1.09001 * 109.47060 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47005 * 300.00164 * 1 2 3 28 28 H 1.08999 * 109.46842 * 60.00144 * 1 2 3 29 29 H 1.08997 * 109.46598 * 304.99924 * 4 2 1 30 30 H 1.08995 * 109.47220 * 64.99800 * 4 2 1 31 31 H 0.96702 * 116.99786 * 179.97438 * 7 5 4 32 32 H 0.96998 * 120.00128 * 265.00147 * 8 2 1 33 33 H 1.09004 * 109.58634 * 353.37662 * 12 11 9 34 34 H 1.09004 * 109.58729 * 113.65354 * 12 11 9 35 35 H 1.09007 * 109.49454 * 65.31943 * 13 12 11 36 36 H 1.09005 * 109.49916 * 185.41181 * 13 12 11 37 37 H 1.09003 * 109.45599 * 181.38751 * 14 13 12 38 38 H 1.09002 * 109.45918 * 301.35294 * 14 13 12 39 39 H 0.97000 * 119.99810 * 180.02562 * 20 19 17 40 40 H 1.09003 * 109.58746 * 246.20511 * 25 11 9 41 41 H 1.09003 * 109.58774 * 6.62678 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 8 4.1428 -0.0233 0.4473 7 8 4.2122 -1.1775 2.3306 8 7 2.0183 -0.6906 -1.1962 9 6 2.1470 -0.0182 -2.3572 10 8 1.7714 1.1354 -2.4365 11 7 2.6922 -0.6247 -3.4302 12 6 3.0495 -2.0491 -3.3840 13 6 4.5164 -2.2032 -3.7977 14 6 4.7290 -1.5459 -5.1632 15 6 4.4084 -0.0525 -5.0678 16 1 5.0485 0.4098 -4.3165 17 6 4.6490 0.5999 -6.4049 18 1 4.4398 0.0584 -7.3155 19 6 5.1363 1.8884 -6.4655 20 7 5.4396 2.4227 -7.6283 21 14 5.3657 2.8749 -4.8960 22 1 6.7691 2.7429 -4.4290 23 1 5.0649 4.3047 -5.1616 24 1 4.4454 2.3616 -3.8496 25 6 2.9350 0.1246 -4.6705 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -0.2618 2.1369 30 1 1.7517 -1.7715 1.2055 31 1 5.1745 -1.0831 2.3280 32 1 2.2490 -1.6317 -1.1527 33 1 2.9138 -2.4271 -2.3707 34 1 2.4134 -2.6078 -4.0706 35 1 5.1555 -1.7207 -3.0581 36 1 4.7674 -3.2621 -3.8605 37 1 5.7665 -1.6757 -5.4711 38 1 4.0714 -2.0121 -5.8970 39 1 5.7827 3.3289 -7.6709 40 1 2.2915 -0.2600 -5.4618 41 1 2.7239 1.1813 -4.5063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588997176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:23 Heat of formation + Delta-G solvation = -125.708890 kcal Electronic energy + Delta-G solvation = -23758.053473 eV Core-core repulsion = 20251.790543 eV Total energy + Delta-G solvation = -3506.262929 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63590 -39.76388 -37.36129 -36.37276 -35.47589 -33.40443 -32.00148 -31.13540 -30.19171 -28.59130 -25.15744 -24.70808 -22.83707 -21.82095 -20.92620 -20.07981 -18.90250 -18.21552 -17.73602 -16.78434 -16.65948 -16.58090 -15.67320 -14.97576 -14.43891 -14.23568 -14.02459 -13.77143 -13.55281 -13.27489 -12.81470 -12.72804 -12.69462 -12.49607 -12.28425 -12.13423 -12.03125 -11.67379 -11.27176 -11.16163 -10.96215 -10.70293 -10.54768 -10.49275 -9.97022 -9.65066 -9.61784 -9.27695 -9.02530 -8.90721 -8.54668 -7.83725 -6.05259 -4.05450 2.03678 2.77436 3.02775 3.38965 3.49095 3.64878 3.71931 4.19988 4.32156 4.51266 4.74980 4.89679 5.13060 5.17753 5.26052 5.27026 5.33826 5.42574 5.54663 5.56791 5.85326 5.90598 6.05690 6.14053 6.22329 6.30583 6.34775 6.49355 6.68241 6.70633 6.75614 6.83375 7.03516 7.31380 7.40430 7.51462 7.70463 7.82399 8.39238 8.55120 8.99516 9.09328 9.59140 11.07070 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.005254 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.279471 B = 5327.574195 C = 5443.193357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 H 0.095 0.905 4 C -0.121 4.121 5 C 0.466 3.534 6 O -0.489 6.489 7 O -0.524 6.524 8 N -0.745 5.745 9 C 0.710 3.290 10 O -0.592 6.592 11 N -0.625 5.625 12 C 0.119 3.881 13 C -0.137 4.137 14 C -0.102 4.102 15 C 0.006 3.994 16 H 0.035 0.965 17 C -0.513 4.513 18 H 0.075 0.925 19 C 0.076 3.924 20 N -0.897 5.897 21 Si 0.867 3.133 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.252 1.252 25 C 0.130 3.870 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.410 0.590 32 H 0.389 0.611 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.264 0.736 40 H 0.057 0.943 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.022 -11.866 20.165 24.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.064 3.936 3 H 0.113 0.887 4 C -0.159 4.159 5 C 0.306 3.694 6 O -0.375 6.375 7 O -0.337 6.337 8 N -0.403 5.403 9 C 0.412 3.588 10 O -0.470 6.470 11 N -0.362 5.362 12 C -0.005 4.005 13 C -0.175 4.175 14 C -0.140 4.140 15 C -0.014 4.014 16 H 0.053 0.947 17 C -0.551 4.551 18 H 0.093 0.907 19 C -0.126 4.126 20 N -0.535 5.535 21 Si 0.694 3.306 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.175 1.175 25 C 0.009 3.991 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.269 0.731 32 H 0.224 0.776 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.478 -10.688 19.739 23.660 hybrid contribution 1.041 0.150 0.828 1.339 sum -6.437 -10.538 20.567 23.990 Atomic orbital electron populations 1.22192 0.94465 1.02189 1.03180 1.20527 0.93781 0.97724 0.81530 0.88654 1.21766 0.87951 1.04831 1.01369 1.23478 0.91754 0.75549 0.78575 1.90879 1.70099 1.38506 1.37985 1.84506 1.27204 1.73107 1.48856 1.45229 1.72942 1.13131 1.09004 1.15819 0.78467 0.84482 0.80081 1.90873 1.55970 1.16569 1.83585 1.47707 1.64249 1.10365 1.13864 1.21488 0.96749 0.82439 0.99806 1.22003 0.95458 1.00112 0.99965 1.21534 1.01199 0.97442 0.93803 1.19566 0.91586 0.92854 0.97411 0.94724 1.20904 1.43648 0.99132 0.91395 0.90724 1.25048 0.94211 0.97524 0.95835 1.69910 1.43795 1.15436 1.24312 0.86985 0.79066 0.79616 0.84927 1.20684 1.21419 1.17532 1.22429 0.99116 0.96431 0.81150 0.92446 0.91692 0.90934 0.86219 0.87285 0.73117 0.77557 0.92210 0.91805 0.92154 0.92021 0.92290 0.92814 0.92637 0.92500 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 2 C 0.17 1.98 2.10 -67.93 -0.14 1.83 16 3 H 0.10 1.43 7.47 -51.93 -0.39 1.04 16 4 C -0.12 -0.91 5.35 -27.88 -0.15 -1.06 16 5 C 0.47 4.85 8.19 36.01 0.29 5.15 16 6 O -0.49 -7.63 16.11 -18.75 -0.30 -7.94 16 7 O -0.52 -4.06 13.42 -39.25 -0.53 -4.58 16 8 N -0.74 -10.46 4.13 -58.67 -0.24 -10.70 16 9 C 0.71 13.86 8.26 -86.92 -0.72 13.14 16 10 O -0.59 -14.03 15.44 5.29 0.08 -13.95 16 11 N -0.63 -12.03 2.97 -178.23 -0.53 -12.56 16 12 C 0.12 1.74 6.43 -3.71 -0.02 1.72 16 13 C -0.14 -2.15 6.08 -26.62 -0.16 -2.31 16 14 C -0.10 -2.00 5.15 -26.69 -0.14 -2.14 16 15 C 0.01 0.14 1.80 -91.43 -0.16 -0.03 16 16 H 0.03 0.89 5.59 -51.93 -0.29 0.60 16 17 C -0.51 -14.46 8.86 -34.44 -0.31 -14.77 16 18 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 19 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 20 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 21 Si 0.87 23.19 26.64 -169.99 -4.53 18.66 16 22 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 24 H -0.25 -6.91 6.01 56.52 0.34 -6.57 16 25 C 0.13 2.97 5.53 -3.49 -0.02 2.95 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 29 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.41 1.88 9.10 45.56 0.41 2.29 16 32 H 0.39 4.41 6.06 -40.82 -0.25 4.17 16 33 H 0.06 0.69 5.57 -51.93 -0.29 0.40 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.08 2.14 5.97 -51.93 -0.31 1.83 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -37.67 331.23 -6.93 -44.60 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.38 Total: 3.16 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.27 Total: 5.45 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.00 Total: -50.39 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.75 Total: -26.47 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.53 Total: 18.66 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -37.67 -6.93 -44.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588997176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.110 kcal (2) G-P(sol) polarization free energy of solvation -37.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds