Wall clock time and date at job start Tue Mar 31 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47060 * 2 1 4 4 C 1.53001 * 109.47197 * 120.00408 * 2 1 3 5 5 C 1.50702 * 109.47052 * 185.00122 * 4 2 1 6 6 O 1.20829 * 120.00021 * 359.97438 * 5 4 2 7 7 O 1.34228 * 119.99782 * 179.97438 * 5 4 2 8 8 N 1.46503 * 109.47140 * 240.00134 * 2 1 3 9 9 C 1.34780 * 119.99947 * 84.99763 * 8 2 1 10 10 O 1.21582 * 120.00110 * 354.90481 * 9 8 2 11 11 N 1.34777 * 119.99628 * 174.89866 * 9 8 2 12 12 C 1.46923 * 120.63427 * 5.05234 * 11 9 8 13 13 C 1.53189 * 108.77700 * 233.58276 * 12 11 9 14 14 C 1.53035 * 109.31346 * 305.36876 * 13 12 11 15 15 C 1.53036 * 109.54008 * 61.36417 * 14 13 12 16 16 H 1.08997 * 109.50260 * 58.58668 * 15 14 13 17 17 C 1.50705 * 109.49586 * 178.68520 * 15 14 13 18 18 H 1.07993 * 120.00163 * 35.06467 * 17 15 14 19 19 C 1.37881 * 119.99726 * 215.06290 * 17 15 14 20 20 N 1.31518 * 119.99935 * 174.97714 * 19 17 15 21 21 Si 1.86792 * 119.99990 * 354.98380 * 19 17 15 22 22 H 1.48498 * 109.47354 * 94.94569 * 21 19 17 23 23 H 1.48501 * 109.47303 * 214.94379 * 21 19 17 24 24 H 1.48505 * 109.47435 * 334.94437 * 21 19 17 25 25 C 1.46925 * 120.62774 * 184.77323 * 11 9 8 26 26 H 1.09001 * 109.47060 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47005 * 300.00164 * 1 2 3 28 28 H 1.08999 * 109.46842 * 60.00144 * 1 2 3 29 29 H 1.08997 * 109.46598 * 304.99924 * 4 2 1 30 30 H 1.08995 * 109.47220 * 64.99800 * 4 2 1 31 31 H 0.96702 * 116.99786 * 179.97438 * 7 5 4 32 32 H 0.96998 * 120.00128 * 265.00147 * 8 2 1 33 33 H 1.09004 * 109.58634 * 353.37662 * 12 11 9 34 34 H 1.09004 * 109.58729 * 113.65354 * 12 11 9 35 35 H 1.09007 * 109.49454 * 65.31943 * 13 12 11 36 36 H 1.09005 * 109.49916 * 185.41181 * 13 12 11 37 37 H 1.09003 * 109.45599 * 181.38751 * 14 13 12 38 38 H 1.09002 * 109.45918 * 301.35294 * 14 13 12 39 39 H 0.97000 * 119.99810 * 180.02562 * 20 19 17 40 40 H 1.09003 * 109.58746 * 246.20511 * 25 11 9 41 41 H 1.09003 * 109.58774 * 6.62678 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 8 4.1428 -0.0233 0.4473 7 8 4.2122 -1.1775 2.3306 8 7 2.0183 -0.6906 -1.1962 9 6 2.1470 -0.0182 -2.3572 10 8 1.7714 1.1354 -2.4365 11 7 2.6922 -0.6247 -3.4302 12 6 3.0495 -2.0491 -3.3840 13 6 4.5164 -2.2032 -3.7977 14 6 4.7290 -1.5459 -5.1632 15 6 4.4084 -0.0525 -5.0678 16 1 5.0485 0.4098 -4.3165 17 6 4.6490 0.5999 -6.4049 18 1 4.4398 0.0584 -7.3155 19 6 5.1363 1.8884 -6.4655 20 7 5.4396 2.4227 -7.6283 21 14 5.3657 2.8749 -4.8960 22 1 6.7691 2.7429 -4.4290 23 1 5.0649 4.3047 -5.1616 24 1 4.4454 2.3616 -3.8496 25 6 2.9350 0.1246 -4.6705 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -0.2618 2.1369 30 1 1.7517 -1.7715 1.2055 31 1 5.1745 -1.0831 2.3280 32 1 2.2490 -1.6317 -1.1527 33 1 2.9138 -2.4271 -2.3707 34 1 2.4134 -2.6078 -4.0706 35 1 5.1555 -1.7207 -3.0581 36 1 4.7674 -3.2621 -3.8605 37 1 5.7665 -1.6757 -5.4711 38 1 4.0714 -2.0121 -5.8970 39 1 5.7827 3.3289 -7.6709 40 1 2.2915 -0.2600 -5.4618 41 1 2.7239 1.1813 -4.5063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588997176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:22 Heat of formation + Delta-G solvation = -154.933101 kcal Electronic energy + Delta-G solvation = -23759.320729 eV Core-core repulsion = 20251.790543 eV Total energy + Delta-G solvation = -3507.530186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66750 -40.98492 -38.76433 -37.31275 -36.57965 -35.31051 -33.77764 -32.43954 -31.77958 -29.33462 -27.08659 -26.21911 -23.75388 -23.40014 -21.96810 -21.44427 -20.47574 -19.33802 -18.96855 -18.69398 -17.64969 -17.51577 -16.70399 -16.65115 -16.15570 -15.58433 -15.50160 -15.24391 -14.88734 -14.63040 -14.35604 -14.24672 -13.82024 -13.65212 -13.38893 -13.23311 -13.12328 -12.93708 -12.69873 -12.62051 -12.48361 -12.07535 -12.03187 -11.76756 -11.63634 -11.57568 -11.29698 -11.13488 -10.93487 -10.80310 -10.18947 -9.35711 -8.38219 -6.38254 1.19215 1.26853 1.28000 1.44723 1.70783 2.14836 2.25461 2.25893 2.95308 3.03701 3.55630 3.97183 4.08420 4.14105 4.14365 4.23073 4.45606 4.49329 4.59297 4.61504 4.64732 4.69206 4.75344 4.86129 4.95834 5.00480 5.03194 5.11236 5.21849 5.36155 5.45663 5.57231 5.60541 5.64883 5.68316 5.71736 6.07096 6.27510 6.69902 7.03143 7.07823 7.28023 7.64220 8.78311 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.005254 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.279471 B = 5327.574195 C = 5443.193357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.051 0.949 4 C -0.109 4.109 5 C 0.471 3.529 6 O -0.553 6.553 7 O -0.512 6.512 8 N -0.724 5.724 9 C 0.700 3.300 10 O -0.645 6.645 11 N -0.631 5.631 12 C 0.114 3.886 13 C -0.127 4.127 14 C -0.099 4.099 15 C 0.005 3.995 16 H 0.014 0.986 17 C -0.507 4.507 18 H 0.049 0.951 19 C 0.029 3.971 20 N -0.939 5.939 21 Si 0.924 3.076 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.269 1.269 25 C 0.142 3.858 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.032 0.968 29 H 0.156 0.844 30 H 0.149 0.851 31 H 0.424 0.576 32 H 0.405 0.595 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.107 0.893 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.266 0.734 40 H 0.061 0.939 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 -15.114 23.448 28.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.069 0.931 4 C -0.146 4.146 5 C 0.315 3.685 6 O -0.443 6.443 7 O -0.326 6.326 8 N -0.382 5.382 9 C 0.402 3.598 10 O -0.527 6.527 11 N -0.368 5.368 12 C -0.008 4.008 13 C -0.166 4.166 14 C -0.137 4.137 15 C -0.015 4.015 16 H 0.032 0.968 17 C -0.545 4.545 18 H 0.067 0.933 19 C -0.170 4.170 20 N -0.579 5.579 21 Si 0.751 3.249 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.194 1.194 25 C 0.019 3.981 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.051 0.949 29 H 0.174 0.826 30 H 0.167 0.833 31 H 0.285 0.715 32 H 0.244 0.756 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.335 -14.020 23.099 28.277 hybrid contribution 1.297 1.084 -0.139 1.696 sum -7.038 -12.935 22.960 27.276 Atomic orbital electron populations 1.22109 0.92593 1.03802 1.02603 1.20715 0.95205 0.96069 0.82261 0.93059 1.21820 0.85853 1.06876 1.00100 1.24027 0.92854 0.73942 0.77724 1.90882 1.71509 1.41409 1.40468 1.84479 1.28522 1.72081 1.47506 1.45078 1.71622 1.13677 1.07844 1.16110 0.78302 0.84082 0.81314 1.90833 1.58121 1.19157 1.84583 1.47607 1.64428 1.12098 1.12619 1.21857 0.96343 0.79684 1.02927 1.21939 0.95974 1.02128 0.96513 1.21435 1.00925 0.94344 0.97007 1.19526 0.92044 0.95690 0.94240 0.96785 1.21229 1.41933 0.98755 0.92614 0.93276 1.25648 0.94843 0.98680 0.97797 1.70001 1.45946 1.16061 1.25845 0.86086 0.78835 0.78357 0.81612 1.19594 1.21220 1.19414 1.21837 0.98128 0.94880 0.83256 0.89613 0.88939 0.94903 0.82649 0.83298 0.71528 0.75624 0.88265 0.89484 0.93488 0.87499 0.93008 0.91985 0.92442 0.92080 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.48 71.98 0.68 -1.86 16 2 C 0.16 3.47 2.10 44.99 0.09 3.56 16 3 H 0.05 1.57 7.47 -2.39 -0.02 1.56 16 4 C -0.11 -1.17 5.35 29.85 0.16 -1.01 16 5 C 0.47 8.50 8.19 71.24 0.58 9.08 16 6 O -0.55 -16.83 16.11 21.95 0.35 -16.47 16 7 O -0.51 -6.15 13.42 -51.40 -0.69 -6.84 16 8 N -0.72 -18.94 4.13 -457.80 -1.89 -20.83 16 9 C 0.70 27.38 8.26 179.05 1.48 28.86 16 10 O -0.64 -31.98 15.44 -3.97 -0.06 -32.04 16 11 N -0.63 -23.85 2.97 -836.06 -2.48 -26.33 16 12 C 0.11 2.92 6.43 86.36 0.56 3.48 16 13 C -0.13 -3.57 6.08 30.67 0.19 -3.38 16 14 C -0.10 -3.78 5.15 30.62 0.16 -3.62 16 15 C 0.00 0.24 1.80 -11.32 -0.02 0.22 16 16 H 0.01 0.74 5.59 -2.39 -0.01 0.72 16 17 C -0.51 -29.57 8.86 25.60 0.23 -29.34 16 18 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 19 C 0.03 1.76 5.47 84.65 0.46 2.22 16 20 N -0.94 -60.30 13.96 21.45 0.30 -60.00 16 21 Si 0.92 50.29 26.64 68.60 1.83 52.11 16 22 H -0.27 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 24 H -0.27 -15.36 6.01 99.48 0.60 -14.77 16 25 C 0.14 6.66 5.53 86.51 0.48 7.14 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.03 0.82 8.09 -2.39 -0.02 0.80 16 29 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.15 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.42 2.74 9.10 -74.06 -0.67 2.06 16 32 H 0.40 7.60 6.06 -92.71 -0.56 7.04 16 33 H 0.10 1.78 5.57 -2.38 -0.01 1.76 16 34 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.05 1.46 8.14 -2.38 -0.02 1.45 16 36 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 40 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.04 2.26 5.97 -2.39 -0.01 2.24 16 Total: -1.00 -89.84 331.23 2.11 -87.73 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -0.29 Total: 7.34 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 5.05 Total: 15.34 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -4.07 Total: -107.17 kcal Atomic # 8 Polarization: -54.95 SS G_CDS: -0.40 Total: -55.35 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 1.83 Total: 52.11 kcal Total: -89.84 2.11 -87.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588997176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.203 kcal (2) G-P(sol) polarization free energy of solvation -89.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds