Wall clock time and date at job start Tue Mar 31 2020 06:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47830 * 2 1 4 4 C 1.53000 * 109.47150 * 119.99985 * 2 1 3 5 5 C 1.50703 * 109.47437 * 184.99664 * 4 2 1 6 6 O 1.20820 * 119.99655 * 0.02562 * 5 4 2 7 7 O 1.34232 * 119.99877 * 180.02562 * 5 4 2 8 8 N 1.46502 * 109.47239 * 239.99753 * 2 1 3 9 9 C 1.34775 * 119.99755 * 85.00207 * 8 2 1 10 10 O 1.21587 * 120.00118 * 355.02213 * 9 8 2 11 11 N 1.34774 * 120.00120 * 175.02510 * 9 8 2 12 12 C 1.46935 * 120.62973 * 5.22341 * 11 9 8 13 13 C 1.53190 * 108.77158 * 126.37264 * 12 11 9 14 14 C 1.53031 * 109.31780 * 54.63564 * 13 12 11 15 15 C 1.53037 * 109.53974 * 298.63545 * 14 13 12 16 16 H 1.09000 * 109.49977 * 301.41035 * 15 14 13 17 17 C 1.50703 * 109.50090 * 181.34571 * 15 14 13 18 18 H 1.07999 * 119.99505 * 0.02562 * 17 15 14 19 19 C 1.37876 * 119.99909 * 180.02562 * 17 15 14 20 20 N 1.31507 * 120.00457 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 119.99701 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47515 * 59.99675 * 21 19 17 23 23 H 1.48501 * 109.47199 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47206 * 299.99689 * 21 19 17 25 25 C 1.46920 * 120.63415 * 184.94897 * 11 9 8 26 26 H 1.09000 * 109.46620 * 59.99733 * 1 2 3 27 27 H 1.08998 * 109.47108 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46919 * 300.00286 * 1 2 3 29 29 H 1.09005 * 109.46830 * 64.99826 * 4 2 1 30 30 H 1.08994 * 109.47313 * 305.00114 * 4 2 1 31 31 H 0.96698 * 116.99339 * 180.02562 * 7 5 4 32 32 H 0.97000 * 120.00205 * 265.00366 * 8 2 1 33 33 H 1.08996 * 109.58420 * 246.15835 * 12 11 9 34 34 H 1.08997 * 109.58225 * 6.43992 * 12 11 9 35 35 H 1.09009 * 109.49390 * 174.59027 * 13 12 11 36 36 H 1.08999 * 109.49682 * 294.68109 * 13 12 11 37 37 H 1.09006 * 109.46170 * 58.65183 * 14 13 12 38 38 H 1.09005 * 109.46403 * 178.61082 * 14 13 12 39 39 H 0.96995 * 120.00187 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.58743 * 353.41584 * 25 11 9 41 41 H 1.08999 * 109.59275 * 113.84180 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3127 6 8 4.1427 -0.0228 0.4478 7 8 4.2122 -1.1784 2.3302 8 7 2.0184 -0.6907 -1.1961 9 6 2.1471 -0.0183 -2.3571 10 8 1.7734 1.1360 -2.4358 11 7 2.6900 -0.6255 -3.4309 12 6 3.0411 -2.0516 -3.3866 13 6 2.3719 -2.7610 -4.5680 14 6 2.7641 -2.0573 -5.8691 15 6 2.2736 -0.6081 -5.8352 16 1 1.1918 -0.5931 -5.7028 17 6 2.6313 0.0745 -7.1303 18 1 3.1557 -0.4707 -7.9011 19 6 2.2890 1.3950 -7.3310 20 7 1.6499 2.0586 -6.3927 21 14 2.7318 2.2408 -8.9367 22 1 2.0855 1.5267 -10.0670 23 1 2.2556 3.6470 -8.9031 24 1 4.2058 2.2209 -9.1166 25 6 2.9365 0.1244 -4.6700 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.7516 -1.7715 1.2055 30 1 1.6054 -0.2618 2.1369 31 1 5.1745 -1.0833 2.3279 32 1 2.2490 -1.6318 -1.1526 33 1 4.1229 -2.1639 -3.4580 34 1 2.6897 -2.4854 -2.4504 35 1 2.7010 -3.7996 -4.6025 36 1 1.2891 -2.7258 -4.4475 37 1 3.8488 -2.0711 -5.9767 38 1 2.3091 -2.5751 -6.7135 39 1 1.4088 2.9874 -6.5341 40 1 2.5139 1.1253 -4.5816 41 1 4.0096 0.1931 -4.8483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588997177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:26 Heat of formation + Delta-G solvation = -125.583174 kcal Electronic energy + Delta-G solvation = -23571.504410 eV Core-core repulsion = 20065.246932 eV Total energy + Delta-G solvation = -3506.257478 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.53597 -39.52346 -37.16930 -36.26960 -35.28032 -33.37610 -31.88851 -30.88028 -29.56688 -28.44754 -25.00636 -24.48660 -22.74489 -21.75833 -20.81671 -19.96138 -18.78403 -18.16442 -17.42951 -16.68319 -16.43639 -16.09567 -15.52100 -14.63016 -14.53164 -14.10520 -13.90369 -13.63760 -13.44304 -12.84160 -12.74582 -12.62473 -12.52754 -12.44479 -11.95898 -11.93827 -11.76111 -11.62456 -11.03858 -10.90628 -10.83311 -10.63888 -10.46328 -10.34055 -10.15965 -9.80048 -9.30906 -9.01629 -8.87564 -8.67577 -8.34511 -7.52961 -5.91005 -4.00484 2.09472 2.84052 3.27888 3.37880 3.42800 3.44185 3.99243 4.41619 4.46420 4.52903 4.86132 5.00804 5.24703 5.33371 5.38345 5.41685 5.48940 5.57196 5.67742 5.72241 6.01675 6.06698 6.22295 6.33559 6.35904 6.37640 6.65312 6.75168 6.87627 6.92553 7.06223 7.13477 7.46187 7.60541 7.75826 7.82414 8.01765 8.15322 8.48895 8.71345 9.02971 9.40232 9.64735 11.13794 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.004362 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.510622 B = 6417.179166 C = 6765.612056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.172 3.828 3 H 0.095 0.905 4 C -0.121 4.121 5 C 0.467 3.533 6 O -0.491 6.491 7 O -0.524 6.524 8 N -0.748 5.748 9 C 0.708 3.292 10 O -0.581 6.581 11 N -0.623 5.623 12 C 0.118 3.882 13 C -0.133 4.133 14 C -0.109 4.109 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.878 5.878 21 Si 0.891 3.109 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.129 3.871 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.409 0.591 32 H 0.386 0.614 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.264 0.736 40 H 0.123 0.877 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.159 -10.070 17.280 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.066 3.934 3 H 0.113 0.887 4 C -0.159 4.159 5 C 0.308 3.692 6 O -0.376 6.376 7 O -0.337 6.337 8 N -0.407 5.407 9 C 0.409 3.591 10 O -0.458 6.458 11 N -0.359 5.359 12 C -0.006 4.006 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.046 0.954 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C 0.009 3.991 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.267 0.733 32 H 0.221 0.779 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.141 0.859 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.568 -8.853 16.992 19.168 hybrid contribution 1.061 -0.069 -0.777 1.317 sum 1.629 -8.922 16.215 18.579 Atomic orbital electron populations 1.22204 0.94580 1.02150 1.03216 1.20483 0.93753 0.97630 0.81528 0.88699 1.21785 0.87776 1.04857 1.01517 1.23509 0.91786 0.75422 0.78462 1.90851 1.70127 1.38625 1.38033 1.84522 1.27089 1.73108 1.48988 1.45261 1.73336 1.12936 1.09118 1.15825 0.78563 0.84685 0.79979 1.90911 1.55146 1.16470 1.83317 1.47722 1.64683 1.09513 1.13993 1.21439 0.99129 0.82475 0.97588 1.21945 1.00521 0.98018 0.96636 1.21609 0.99986 0.98706 0.94409 1.18904 0.96314 0.89243 0.93521 0.95391 1.21034 1.38314 0.96325 1.00442 0.92500 1.25051 0.94837 0.97564 0.96532 1.69890 1.38742 1.10312 1.32565 0.86674 0.78772 0.78580 0.84045 1.20346 1.21285 1.20282 1.22061 0.98302 0.99194 0.79565 0.90725 0.92547 0.91851 0.87350 0.86305 0.73267 0.77865 0.92404 0.92451 0.92458 0.92216 0.93263 0.93129 0.92637 0.85872 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.48 37.16 0.35 -1.50 16 2 C 0.17 2.21 2.10 -67.93 -0.14 2.06 16 3 H 0.09 1.51 7.47 -51.93 -0.39 1.13 16 4 C -0.12 -1.01 5.35 -27.88 -0.15 -1.16 16 5 C 0.47 4.98 8.19 36.01 0.29 5.28 16 6 O -0.49 -7.62 16.11 -18.74 -0.30 -7.92 16 7 O -0.52 -4.10 13.42 -39.26 -0.53 -4.63 16 8 N -0.75 -11.60 4.13 -58.68 -0.24 -11.84 16 9 C 0.71 15.20 8.26 -86.92 -0.72 14.48 16 10 O -0.58 -15.16 15.43 5.29 0.08 -15.08 16 11 N -0.62 -13.29 2.98 -178.77 -0.53 -13.83 16 12 C 0.12 1.94 6.39 -3.71 -0.02 1.92 16 13 C -0.13 -2.21 6.08 -26.62 -0.16 -2.37 16 14 C -0.11 -2.24 5.11 -26.70 -0.14 -2.38 16 15 C 0.04 1.01 2.24 -91.87 -0.21 0.80 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.52 -14.54 8.57 -34.44 -0.29 -14.83 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 20 N -0.88 -26.35 11.39 55.43 0.63 -25.72 16 21 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.13 3.31 5.39 -3.93 -0.02 3.29 16 26 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.41 1.80 9.10 45.56 0.41 2.21 16 32 H 0.39 4.95 6.09 -40.82 -0.25 4.70 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 35 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.12 3.67 5.10 -51.93 -0.27 3.41 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -36.22 333.90 -7.57 -43.80 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.39 Total: 6.18 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -1.30 Total: 7.29 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.14 Total: -51.38 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.75 Total: -27.63 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.22 -7.57 -43.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588997177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.788 kcal (2) G-P(sol) polarization free energy of solvation -36.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds