Wall clock time and date at job start Tue Mar 31 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47830 * 2 1 4 4 C 1.53000 * 109.47150 * 119.99985 * 2 1 3 5 5 C 1.50703 * 109.47437 * 184.99664 * 4 2 1 6 6 O 1.20820 * 119.99655 * 0.02562 * 5 4 2 7 7 O 1.34232 * 119.99877 * 180.02562 * 5 4 2 8 8 N 1.46502 * 109.47239 * 239.99753 * 2 1 3 9 9 C 1.34775 * 119.99755 * 85.00207 * 8 2 1 10 10 O 1.21587 * 120.00118 * 355.02213 * 9 8 2 11 11 N 1.34774 * 120.00120 * 175.02510 * 9 8 2 12 12 C 1.46935 * 120.62973 * 5.22341 * 11 9 8 13 13 C 1.53190 * 108.77158 * 126.37264 * 12 11 9 14 14 C 1.53031 * 109.31780 * 54.63564 * 13 12 11 15 15 C 1.53037 * 109.53974 * 298.63545 * 14 13 12 16 16 H 1.09000 * 109.49977 * 301.41035 * 15 14 13 17 17 C 1.50703 * 109.50090 * 181.34571 * 15 14 13 18 18 H 1.07999 * 119.99505 * 0.02562 * 17 15 14 19 19 C 1.37876 * 119.99909 * 180.02562 * 17 15 14 20 20 N 1.31507 * 120.00457 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 119.99701 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47515 * 59.99675 * 21 19 17 23 23 H 1.48501 * 109.47199 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47206 * 299.99689 * 21 19 17 25 25 C 1.46920 * 120.63415 * 184.94897 * 11 9 8 26 26 H 1.09000 * 109.46620 * 59.99733 * 1 2 3 27 27 H 1.08998 * 109.47108 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46919 * 300.00286 * 1 2 3 29 29 H 1.09005 * 109.46830 * 64.99826 * 4 2 1 30 30 H 1.08994 * 109.47313 * 305.00114 * 4 2 1 31 31 H 0.96698 * 116.99339 * 180.02562 * 7 5 4 32 32 H 0.97000 * 120.00205 * 265.00366 * 8 2 1 33 33 H 1.08996 * 109.58420 * 246.15835 * 12 11 9 34 34 H 1.08997 * 109.58225 * 6.43992 * 12 11 9 35 35 H 1.09009 * 109.49390 * 174.59027 * 13 12 11 36 36 H 1.08999 * 109.49682 * 294.68109 * 13 12 11 37 37 H 1.09006 * 109.46170 * 58.65183 * 14 13 12 38 38 H 1.09005 * 109.46403 * 178.61082 * 14 13 12 39 39 H 0.96995 * 120.00187 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.58743 * 353.41584 * 25 11 9 41 41 H 1.08999 * 109.59275 * 113.84180 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3127 6 8 4.1427 -0.0228 0.4478 7 8 4.2122 -1.1784 2.3302 8 7 2.0184 -0.6907 -1.1961 9 6 2.1471 -0.0183 -2.3571 10 8 1.7734 1.1360 -2.4358 11 7 2.6900 -0.6255 -3.4309 12 6 3.0411 -2.0516 -3.3866 13 6 2.3719 -2.7610 -4.5680 14 6 2.7641 -2.0573 -5.8691 15 6 2.2736 -0.6081 -5.8352 16 1 1.1918 -0.5931 -5.7028 17 6 2.6313 0.0745 -7.1303 18 1 3.1557 -0.4707 -7.9011 19 6 2.2890 1.3950 -7.3310 20 7 1.6499 2.0586 -6.3927 21 14 2.7318 2.2408 -8.9367 22 1 2.0855 1.5267 -10.0670 23 1 2.2556 3.6470 -8.9031 24 1 4.2058 2.2209 -9.1166 25 6 2.9365 0.1244 -4.6700 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.7516 -1.7715 1.2055 30 1 1.6054 -0.2618 2.1369 31 1 5.1745 -1.0833 2.3279 32 1 2.2490 -1.6318 -1.1526 33 1 4.1229 -2.1639 -3.4580 34 1 2.6897 -2.4854 -2.4504 35 1 2.7010 -3.7996 -4.6025 36 1 1.2891 -2.7258 -4.4475 37 1 3.8488 -2.0711 -5.9767 38 1 2.3091 -2.5751 -6.7135 39 1 1.4088 2.9874 -6.5341 40 1 2.5139 1.1253 -4.5816 41 1 4.0096 0.1931 -4.8483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588997177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:25 Heat of formation + Delta-G solvation = -152.951826 kcal Electronic energy + Delta-G solvation = -23572.691203 eV Core-core repulsion = 20065.246932 eV Total energy + Delta-G solvation = -3507.444272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59035 -40.91192 -38.67114 -37.25981 -36.52139 -35.32435 -33.63049 -32.24052 -31.33159 -29.31574 -27.03240 -26.11533 -23.77042 -23.41681 -21.97485 -21.40993 -20.41471 -19.06581 -18.91896 -18.20530 -17.57274 -17.47189 -16.72184 -16.50947 -16.16500 -15.58689 -15.25788 -15.16976 -14.68878 -14.48877 -14.28161 -14.02955 -13.72728 -13.54043 -13.34062 -13.19372 -12.87323 -12.84496 -12.65614 -12.45542 -12.29110 -12.24126 -11.99717 -11.83120 -11.62506 -11.54475 -11.17324 -10.94040 -10.81376 -10.50532 -10.11435 -9.22725 -8.08634 -6.27043 1.30481 1.40303 1.42732 1.50984 1.84185 2.16871 2.34486 2.42670 3.07323 3.20837 3.58340 4.01684 4.12643 4.15140 4.25892 4.28320 4.52584 4.58783 4.63404 4.67966 4.73281 4.81886 4.83232 4.87777 5.05086 5.10209 5.27048 5.28594 5.33929 5.37506 5.56581 5.67261 5.67914 5.70825 5.90078 5.99989 6.19477 6.37436 6.86441 7.06575 7.19641 7.43039 7.77121 8.94259 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.004362 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.510622 B = 6417.179166 C = 6765.612056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 H 0.053 0.947 4 C -0.109 4.109 5 C 0.473 3.527 6 O -0.551 6.551 7 O -0.512 6.512 8 N -0.725 5.725 9 C 0.698 3.302 10 O -0.641 6.641 11 N -0.630 5.630 12 C 0.112 3.888 13 C -0.124 4.124 14 C -0.105 4.105 15 C 0.039 3.961 16 H -0.015 1.015 17 C -0.539 4.539 18 H 0.063 0.937 19 C 0.008 3.992 20 N -0.915 5.915 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.289 1.289 24 H -0.267 1.267 25 C 0.144 3.856 26 H 0.025 0.975 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.147 0.853 30 H 0.156 0.844 31 H 0.424 0.576 32 H 0.403 0.597 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.259 0.741 40 H 0.074 0.926 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.603 -13.261 18.998 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.059 3.941 3 H 0.071 0.929 4 C -0.146 4.146 5 C 0.317 3.683 6 O -0.441 6.441 7 O -0.325 6.325 8 N -0.384 5.384 9 C 0.400 3.600 10 O -0.522 6.522 11 N -0.366 5.366 12 C -0.010 4.010 13 C -0.162 4.162 14 C -0.142 4.142 15 C 0.020 3.980 16 H 0.003 0.997 17 C -0.577 4.577 18 H 0.081 0.919 19 C -0.191 4.191 20 N -0.554 5.554 21 Si 0.784 3.216 22 H -0.191 1.191 23 H -0.215 1.215 24 H -0.192 1.192 25 C 0.020 3.980 26 H 0.044 0.956 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.165 0.835 30 H 0.174 0.826 31 H 0.285 0.715 32 H 0.241 0.759 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.030 -12.145 18.775 22.384 hybrid contribution 0.942 0.894 -1.209 1.775 sum 1.973 -11.251 17.565 20.953 Atomic orbital electron populations 1.22125 0.93231 1.03594 1.02385 1.20673 0.94808 0.96213 0.82379 0.92871 1.21793 0.86157 1.06730 0.99917 1.23925 0.92684 0.73954 0.77740 1.90858 1.71435 1.41393 1.40431 1.84484 1.28537 1.72018 1.47480 1.45063 1.71952 1.13447 1.07897 1.16145 0.78280 0.84267 0.81339 1.90865 1.57527 1.19359 1.84463 1.47642 1.64781 1.11530 1.12686 1.21800 1.00183 0.79315 0.99709 1.21898 1.00145 1.00034 0.94091 1.21500 1.00123 0.95443 0.97161 1.18829 0.93701 0.92785 0.92720 0.99651 1.21506 1.37848 0.96767 1.01596 0.91887 1.25937 0.94748 0.98473 0.99948 1.70111 1.40257 1.10231 1.34751 0.85598 0.78901 0.77173 0.79918 1.19075 1.21493 1.19232 1.21448 0.96890 0.97735 0.81880 0.95579 0.89842 0.88690 0.83491 0.82593 0.71466 0.75882 0.91072 0.88312 0.87623 0.92988 0.92658 0.92797 0.93214 0.90741 0.95500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 9.48 71.98 0.68 -2.63 16 2 C 0.16 4.06 2.10 44.99 0.09 4.15 16 3 H 0.05 1.78 7.47 -2.39 -0.02 1.76 16 4 C -0.11 -1.39 5.35 29.85 0.16 -1.23 16 5 C 0.47 8.91 8.19 71.24 0.58 9.50 16 6 O -0.55 -16.91 16.11 21.98 0.35 -16.55 16 7 O -0.51 -6.26 13.42 -51.44 -0.69 -6.96 16 8 N -0.72 -21.93 4.13 -457.82 -1.89 -23.82 16 9 C 0.70 31.15 8.26 179.06 1.48 32.63 16 10 O -0.64 -36.05 15.43 -3.99 -0.06 -36.11 16 11 N -0.63 -27.52 2.98 -837.75 -2.50 -30.01 16 12 C 0.11 3.42 6.39 86.36 0.55 3.97 16 13 C -0.12 -3.76 6.08 30.67 0.19 -3.58 16 14 C -0.10 -4.20 5.11 30.62 0.16 -4.04 16 15 C 0.04 2.07 2.24 -11.60 -0.03 2.05 16 16 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 17 C -0.54 -30.88 8.57 25.60 0.22 -30.66 16 18 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 19 C 0.01 0.49 5.30 84.66 0.45 0.94 16 20 N -0.92 -58.22 11.39 21.45 0.24 -57.98 16 21 Si 0.96 45.78 29.54 68.60 2.03 47.81 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 C 0.14 7.74 5.39 86.22 0.46 8.21 16 26 H 0.02 0.81 8.10 -2.39 -0.02 0.79 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.15 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.42 2.58 9.10 -74.06 -0.67 1.90 16 32 H 0.40 9.15 6.09 -92.71 -0.56 8.58 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.10 2.18 5.64 -2.39 -0.01 2.16 16 35 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 40 H 0.07 4.79 5.10 -2.39 -0.01 4.78 16 41 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -88.93 333.90 2.30 -86.63 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -0.19 Total: 17.70 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 5.00 Total: 19.29 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -4.14 Total: -111.82 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -0.40 Total: -59.62 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -88.93 2.30 -86.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588997177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.318 kcal (2) G-P(sol) polarization free energy of solvation -88.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds