Wall clock time and date at job start Tue Mar 31 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46577 * 2 1 4 4 C 1.52998 * 109.46979 * 240.00030 * 2 1 3 5 5 C 1.50703 * 109.47034 * 174.99637 * 4 2 1 6 6 O 1.20832 * 119.99853 * 0.02562 * 5 4 2 7 7 O 1.34229 * 119.99922 * 179.97438 * 5 4 2 8 8 N 1.46497 * 109.47129 * 119.99719 * 2 1 3 9 9 C 1.34770 * 120.00517 * 275.00043 * 8 2 1 10 10 O 1.21592 * 119.99860 * 354.92783 * 9 8 2 11 11 N 1.34779 * 120.00294 * 174.92114 * 9 8 2 12 12 C 1.46916 * 120.63063 * 5.03732 * 11 9 8 13 13 C 1.53190 * 108.77631 * 233.58374 * 12 11 9 14 14 C 1.53040 * 109.31483 * 305.36644 * 13 12 11 15 15 C 1.53039 * 109.53831 * 61.36205 * 14 13 12 16 16 H 1.08995 * 109.49863 * 58.58756 * 15 14 13 17 17 C 1.50694 * 109.49566 * 178.68714 * 15 14 13 18 18 H 1.07999 * 120.00433 * 0.02562 * 17 15 14 19 19 C 1.37883 * 120.00059 * 180.02562 * 17 15 14 20 20 N 1.31523 * 119.99590 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 120.00405 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47683 * 89.99552 * 21 19 17 23 23 H 1.48502 * 109.47253 * 209.99962 * 21 19 17 24 24 H 1.48503 * 109.47200 * 329.99619 * 21 19 17 25 25 C 1.46929 * 120.62772 * 184.75378 * 11 9 8 26 26 H 1.09003 * 109.47027 * 299.99472 * 1 2 3 27 27 H 1.08997 * 109.47317 * 60.00083 * 1 2 3 28 28 H 1.09009 * 109.46995 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47231 * 294.99423 * 4 2 1 30 30 H 1.08995 * 109.47119 * 55.00165 * 4 2 1 31 31 H 0.96702 * 116.99211 * 180.02562 * 7 5 4 32 32 H 0.97006 * 119.99727 * 95.00515 * 8 2 1 33 33 H 1.09002 * 109.58908 * 353.36976 * 12 11 9 34 34 H 1.08999 * 109.59260 * 113.65228 * 12 11 9 35 35 H 1.09009 * 109.49794 * 65.31525 * 13 12 11 36 36 H 1.09005 * 109.49913 * 185.41172 * 13 12 11 37 37 H 1.09001 * 109.46562 * 181.38811 * 14 13 12 38 38 H 1.09006 * 109.45879 * 301.35853 * 14 13 12 39 39 H 0.97000 * 119.99523 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.58788 * 246.20054 * 25 11 9 41 41 H 1.08992 * 109.59025 * 6.63057 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3128 6 8 4.1428 -0.0232 -0.4473 7 8 4.2122 -1.1781 -2.3302 8 7 2.0183 -0.6905 1.1962 9 6 2.1471 -0.0183 2.3571 10 8 1.9467 1.1806 2.3909 11 7 2.4978 -0.6748 3.4808 12 6 2.8500 -2.1004 3.4358 13 6 1.9888 -2.8534 4.4546 14 6 2.1544 -2.2082 5.8325 15 6 1.6780 -0.7549 5.7777 16 1 0.6346 -0.7256 5.4640 17 6 1.8113 -0.1302 7.1426 18 1 2.1976 -0.7111 7.9670 19 6 1.4402 1.1832 7.3389 20 7 0.9702 1.8908 6.3347 21 14 1.6060 1.9579 9.0305 22 1 2.9491 2.5777 9.1617 23 1 0.5614 2.9992 9.2027 24 1 1.4394 0.9126 10.0721 25 6 2.5412 0.0233 4.7729 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1369 31 1 5.1746 -1.0836 -2.3276 32 1 2.2491 -1.6317 1.1526 33 1 2.6603 -2.4923 2.4365 34 1 3.9043 -2.2244 3.6828 35 1 0.9423 -2.8044 4.1534 36 1 2.3063 -3.8952 4.5002 37 1 1.5618 -2.7573 6.5642 38 1 3.2049 -2.2351 6.1222 39 1 0.7095 2.8148 6.4728 40 1 3.5702 0.0688 5.1293 41 1 2.1478 1.0330 4.6562 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588997178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:29 Heat of formation + Delta-G solvation = -125.763654 kcal Electronic energy + Delta-G solvation = -23566.150367 eV Core-core repulsion = 20059.885063 eV Total energy + Delta-G solvation = -3506.265304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.53216 -39.52129 -37.15009 -36.26457 -35.28846 -33.36737 -31.88189 -30.89169 -29.55124 -28.44766 -25.01594 -24.49238 -22.72964 -21.76990 -20.81167 -19.95749 -18.77822 -18.16261 -17.45240 -16.67449 -16.43780 -16.09123 -15.52280 -14.61796 -14.58326 -14.06852 -13.93746 -13.65048 -13.44280 -12.87889 -12.67108 -12.62331 -12.54604 -12.43082 -11.98365 -11.92893 -11.75936 -11.62230 -11.04592 -10.92844 -10.82306 -10.63395 -10.46499 -10.33246 -10.17601 -9.81373 -9.31519 -9.03696 -8.88542 -8.65682 -8.36624 -7.53927 -5.92966 -4.01714 2.09695 2.84325 3.28085 3.36361 3.42448 3.44635 3.99859 4.41177 4.45983 4.51878 4.87236 5.01032 5.25180 5.33411 5.37035 5.42204 5.49960 5.56630 5.66748 5.72685 6.02342 6.07454 6.21644 6.32885 6.35608 6.36789 6.64053 6.73120 6.87069 6.93239 7.04692 7.14821 7.42491 7.59380 7.76058 7.81510 8.00014 8.13096 8.47356 8.70824 9.01796 9.39989 9.63541 11.12235 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.004331 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.333732 B = 6463.620648 C = 6855.628087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.097 0.903 4 C -0.121 4.121 5 C 0.467 3.533 6 O -0.491 6.491 7 O -0.524 6.524 8 N -0.747 5.747 9 C 0.708 3.292 10 O -0.583 6.583 11 N -0.623 5.623 12 C 0.118 3.882 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.040 3.960 16 H 0.028 0.972 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.879 5.879 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.130 3.870 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.408 0.592 32 H 0.386 0.614 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.263 0.737 40 H 0.037 0.963 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.303 -9.837 -16.999 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.064 3.936 3 H 0.115 0.885 4 C -0.159 4.159 5 C 0.308 3.692 6 O -0.376 6.376 7 O -0.337 6.337 8 N -0.406 5.406 9 C 0.410 3.590 10 O -0.460 6.460 11 N -0.360 5.360 12 C -0.007 4.007 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.516 5.516 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.200 1.200 25 C 0.010 3.990 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.267 0.733 32 H 0.222 0.778 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.811 -8.602 -16.734 18.903 hybrid contribution 0.913 -0.088 0.816 1.228 sum 2.724 -8.689 -15.918 18.339 Atomic orbital electron populations 1.22209 0.94565 1.02213 1.03161 1.20495 0.93668 0.97888 0.81539 0.88483 1.21778 0.87754 1.04844 1.01525 1.23519 0.91800 0.75407 0.78463 1.90855 1.70124 1.38630 1.38023 1.84524 1.27063 1.73121 1.48998 1.45244 1.73290 1.12930 1.09144 1.15816 0.78006 0.85126 0.80041 1.90901 1.57935 1.12590 1.84583 1.47739 1.70619 1.09385 1.08239 1.21445 0.98695 0.82450 0.98075 1.21948 0.99805 0.97899 0.97443 1.21612 1.00422 0.98972 0.93723 1.19061 0.95409 0.89056 0.94380 0.95341 1.21079 1.43741 0.96776 0.94437 0.92442 1.25055 0.94845 0.97394 0.96707 1.69907 1.42274 1.09191 1.30237 0.86606 0.77798 0.79063 0.84594 1.20661 1.21246 1.19986 1.22240 0.98705 1.00136 0.77961 0.90884 0.91777 0.92475 0.87355 0.86313 0.73289 0.77835 0.92443 0.92355 0.92196 0.92475 0.93124 0.93252 0.92701 0.94443 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.48 37.16 0.35 -1.52 16 2 C 0.17 2.20 2.18 -67.93 -0.15 2.05 16 3 H 0.10 1.57 7.32 -51.93 -0.38 1.19 16 4 C -0.12 -1.02 5.35 -27.88 -0.15 -1.16 16 5 C 0.47 5.01 8.19 36.01 0.29 5.30 16 6 O -0.49 -7.65 16.11 -18.75 -0.30 -7.95 16 7 O -0.52 -4.11 13.42 -39.26 -0.53 -4.64 16 8 N -0.75 -11.66 4.13 -58.68 -0.24 -11.90 16 9 C 0.71 15.24 8.26 -86.92 -0.72 14.52 16 10 O -0.58 -15.25 15.41 5.28 0.08 -15.17 16 11 N -0.62 -13.26 2.97 -178.24 -0.53 -13.78 16 12 C 0.12 1.92 6.43 -3.72 -0.02 1.90 16 13 C -0.13 -2.17 6.08 -26.61 -0.16 -2.34 16 14 C -0.11 -2.23 5.10 -26.69 -0.14 -2.36 16 15 C 0.04 1.02 2.26 -91.43 -0.21 0.81 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.52 -14.43 8.56 -34.44 -0.29 -14.73 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.78 5.30 -17.81 -0.09 1.68 16 20 N -0.88 -26.22 11.41 55.43 0.63 -25.58 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.13 3.31 5.42 -3.48 -0.02 3.29 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.41 1.79 9.10 45.56 0.41 2.21 16 32 H 0.39 4.99 6.06 -40.82 -0.25 4.74 16 33 H 0.06 0.75 5.57 -51.93 -0.29 0.46 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.12 3.61 5.18 -51.93 -0.27 3.34 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -36.15 333.92 -7.56 -43.71 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.39 Total: 6.20 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -1.30 Total: 7.45 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.14 Total: -51.27 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.75 Total: -27.76 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.15 -7.56 -43.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588997178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.052 kcal (2) G-P(sol) polarization free energy of solvation -36.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds