Wall clock time and date at job start Tue Mar 31 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46577 * 2 1 4 4 C 1.52998 * 109.46979 * 240.00030 * 2 1 3 5 5 C 1.50703 * 109.47034 * 174.99637 * 4 2 1 6 6 O 1.20832 * 119.99853 * 0.02562 * 5 4 2 7 7 O 1.34229 * 119.99922 * 179.97438 * 5 4 2 8 8 N 1.46497 * 109.47129 * 119.99719 * 2 1 3 9 9 C 1.34770 * 120.00517 * 275.00043 * 8 2 1 10 10 O 1.21592 * 119.99860 * 354.92783 * 9 8 2 11 11 N 1.34779 * 120.00294 * 174.92114 * 9 8 2 12 12 C 1.46916 * 120.63063 * 5.03732 * 11 9 8 13 13 C 1.53190 * 108.77631 * 233.58374 * 12 11 9 14 14 C 1.53040 * 109.31483 * 305.36644 * 13 12 11 15 15 C 1.53039 * 109.53831 * 61.36205 * 14 13 12 16 16 H 1.08995 * 109.49863 * 58.58756 * 15 14 13 17 17 C 1.50694 * 109.49566 * 178.68714 * 15 14 13 18 18 H 1.07999 * 120.00433 * 0.02562 * 17 15 14 19 19 C 1.37883 * 120.00059 * 180.02562 * 17 15 14 20 20 N 1.31523 * 119.99590 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 120.00405 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47683 * 89.99552 * 21 19 17 23 23 H 1.48502 * 109.47253 * 209.99962 * 21 19 17 24 24 H 1.48503 * 109.47200 * 329.99619 * 21 19 17 25 25 C 1.46929 * 120.62772 * 184.75378 * 11 9 8 26 26 H 1.09003 * 109.47027 * 299.99472 * 1 2 3 27 27 H 1.08997 * 109.47317 * 60.00083 * 1 2 3 28 28 H 1.09009 * 109.46995 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47231 * 294.99423 * 4 2 1 30 30 H 1.08995 * 109.47119 * 55.00165 * 4 2 1 31 31 H 0.96702 * 116.99211 * 180.02562 * 7 5 4 32 32 H 0.97006 * 119.99727 * 95.00515 * 8 2 1 33 33 H 1.09002 * 109.58908 * 353.36976 * 12 11 9 34 34 H 1.08999 * 109.59260 * 113.65228 * 12 11 9 35 35 H 1.09009 * 109.49794 * 65.31525 * 13 12 11 36 36 H 1.09005 * 109.49913 * 185.41172 * 13 12 11 37 37 H 1.09001 * 109.46562 * 181.38811 * 14 13 12 38 38 H 1.09006 * 109.45879 * 301.35853 * 14 13 12 39 39 H 0.97000 * 119.99523 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.58788 * 246.20054 * 25 11 9 41 41 H 1.08992 * 109.59025 * 6.63057 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3128 6 8 4.1428 -0.0232 -0.4473 7 8 4.2122 -1.1781 -2.3302 8 7 2.0183 -0.6905 1.1962 9 6 2.1471 -0.0183 2.3571 10 8 1.9467 1.1806 2.3909 11 7 2.4978 -0.6748 3.4808 12 6 2.8500 -2.1004 3.4358 13 6 1.9888 -2.8534 4.4546 14 6 2.1544 -2.2082 5.8325 15 6 1.6780 -0.7549 5.7777 16 1 0.6346 -0.7256 5.4640 17 6 1.8113 -0.1302 7.1426 18 1 2.1976 -0.7111 7.9670 19 6 1.4402 1.1832 7.3389 20 7 0.9702 1.8908 6.3347 21 14 1.6060 1.9579 9.0305 22 1 2.9491 2.5777 9.1617 23 1 0.5614 2.9992 9.2027 24 1 1.4394 0.9126 10.0721 25 6 2.5412 0.0233 4.7729 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1369 31 1 5.1746 -1.0836 -2.3276 32 1 2.2491 -1.6317 1.1526 33 1 2.6603 -2.4923 2.4365 34 1 3.9043 -2.2244 3.6828 35 1 0.9423 -2.8044 4.1534 36 1 2.3063 -3.8952 4.5002 37 1 1.5618 -2.7573 6.5642 38 1 3.2049 -2.2351 6.1222 39 1 0.7095 2.8148 6.4728 40 1 3.5702 0.0688 5.1293 41 1 2.1478 1.0330 4.6562 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588997178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:29 Heat of formation + Delta-G solvation = -153.009714 kcal Electronic energy + Delta-G solvation = -23567.331845 eV Core-core repulsion = 20059.885063 eV Total energy + Delta-G solvation = -3507.446782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.59069 -40.90902 -38.64421 -37.26368 -36.53216 -35.31114 -33.61667 -32.24887 -31.30652 -29.32621 -27.03028 -26.11555 -23.75640 -23.42331 -21.97068 -21.40822 -20.40421 -19.08099 -18.92517 -18.19364 -17.58636 -17.45646 -16.70746 -16.51066 -16.21163 -15.56854 -15.29455 -15.17470 -14.67302 -14.46518 -14.26642 -14.02433 -13.71387 -13.55314 -13.35551 -13.19407 -12.88768 -12.86651 -12.63179 -12.45736 -12.29907 -12.23031 -12.00759 -11.81272 -11.62297 -11.54501 -11.17231 -10.94691 -10.81541 -10.51636 -10.10597 -9.23257 -8.09506 -6.26912 1.30207 1.40479 1.41418 1.52288 1.84148 2.16584 2.34555 2.42556 3.06325 3.20875 3.57904 4.02279 4.13324 4.15989 4.25266 4.28500 4.52085 4.59287 4.63205 4.67875 4.73971 4.80522 4.83189 4.86901 5.05414 5.10741 5.27254 5.29580 5.34736 5.35372 5.56994 5.66968 5.67717 5.70617 5.89307 5.98928 6.19166 6.37178 6.86349 7.06448 7.19176 7.43060 7.76730 8.93959 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.004331 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.333732 B = 6463.620648 C = 6855.628087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.055 0.945 4 C -0.108 4.108 5 C 0.473 3.527 6 O -0.551 6.551 7 O -0.512 6.512 8 N -0.725 5.725 9 C 0.699 3.301 10 O -0.643 6.643 11 N -0.631 5.631 12 C 0.112 3.888 13 C -0.123 4.123 14 C -0.105 4.105 15 C 0.040 3.960 16 H -0.012 1.012 17 C -0.537 4.537 18 H 0.063 0.937 19 C 0.008 3.992 20 N -0.916 5.916 21 Si 0.959 3.041 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.260 1.260 25 C 0.144 3.856 26 H 0.023 0.977 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.147 0.853 30 H 0.156 0.844 31 H 0.424 0.576 32 H 0.403 0.597 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.259 0.741 40 H 0.026 0.974 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 -13.085 -18.646 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.073 0.927 4 C -0.146 4.146 5 C 0.317 3.683 6 O -0.441 6.441 7 O -0.325 6.325 8 N -0.384 5.384 9 C 0.400 3.600 10 O -0.524 6.524 11 N -0.366 5.366 12 C -0.011 4.011 13 C -0.161 4.161 14 C -0.143 4.143 15 C 0.021 3.979 16 H 0.006 0.994 17 C -0.576 4.576 18 H 0.081 0.919 19 C -0.191 4.191 20 N -0.554 5.554 21 Si 0.784 3.216 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.185 1.185 25 C 0.021 3.979 26 H 0.042 0.958 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.165 0.835 30 H 0.174 0.826 31 H 0.285 0.715 32 H 0.241 0.759 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.123 0.877 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.127 -11.951 -18.446 22.082 hybrid contribution 0.848 0.897 1.227 1.740 sum 2.976 -11.054 -17.219 20.677 Atomic orbital electron populations 1.22135 0.93245 1.03640 1.02314 1.20683 0.94682 0.96461 0.82442 0.92685 1.21786 0.86165 1.06712 0.99917 1.23927 0.92686 0.73942 0.77748 1.90862 1.71431 1.41400 1.40424 1.84486 1.28526 1.72021 1.47472 1.45054 1.71871 1.13447 1.07979 1.16138 0.77737 0.84666 0.81440 1.90853 1.60351 1.15538 1.85698 1.47655 1.70751 1.11461 1.06778 1.21809 0.99423 0.79233 1.00607 1.21894 0.99719 0.99981 0.94473 1.21505 1.00376 0.95593 0.96787 1.18978 0.93162 0.92585 0.93187 0.99358 1.21542 1.43103 0.97139 0.95777 0.91913 1.25929 0.94580 0.98119 1.00463 1.70120 1.43622 1.09166 1.32511 0.85547 0.77666 0.78246 0.80155 1.20228 1.21260 1.18456 1.21634 0.97404 0.98495 0.80365 0.95797 0.88585 0.89789 0.83494 0.82602 0.71466 0.75855 0.88352 0.91128 0.92748 0.87679 0.92751 0.92744 0.93228 0.95552 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.48 71.98 0.68 -2.69 16 2 C 0.16 4.06 2.18 44.99 0.10 4.16 16 3 H 0.05 1.87 7.32 -2.39 -0.02 1.85 16 4 C -0.11 -1.41 5.35 29.85 0.16 -1.25 16 5 C 0.47 8.99 8.19 71.24 0.58 9.57 16 6 O -0.55 -17.01 16.11 21.94 0.35 -16.65 16 7 O -0.51 -6.30 13.42 -51.41 -0.69 -6.99 16 8 N -0.72 -22.10 4.13 -457.82 -1.89 -23.99 16 9 C 0.70 31.23 8.26 179.06 1.48 32.71 16 10 O -0.64 -36.28 15.41 -4.01 -0.06 -36.34 16 11 N -0.63 -27.40 2.97 -836.08 -2.48 -29.88 16 12 C 0.11 3.38 6.43 86.36 0.56 3.93 16 13 C -0.12 -3.66 6.08 30.67 0.19 -3.47 16 14 C -0.10 -4.16 5.10 30.62 0.16 -4.00 16 15 C 0.04 2.11 2.26 -11.32 -0.03 2.09 16 16 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 17 C -0.54 -30.56 8.56 25.60 0.22 -30.34 16 18 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 19 C 0.01 0.49 5.30 84.65 0.45 0.94 16 20 N -0.92 -57.84 11.41 21.45 0.24 -57.59 16 21 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 25 C 0.14 7.73 5.42 86.51 0.47 8.20 16 26 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.16 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.42 2.57 9.10 -74.06 -0.67 1.90 16 32 H 0.40 9.23 6.06 -92.70 -0.56 8.67 16 33 H 0.10 2.16 5.57 -2.39 -0.01 2.14 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 4.66 5.18 -2.39 -0.01 4.65 16 Total: -1.00 -88.63 333.92 2.33 -86.30 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -0.18 Total: 17.66 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 5.01 Total: 19.83 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -4.13 Total: -111.46 kcal Atomic # 8 Polarization: -59.58 SS G_CDS: -0.40 Total: -59.98 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -88.63 2.33 -86.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588997178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.708 kcal (2) G-P(sol) polarization free energy of solvation -88.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds